HEADER TRANSFERASE/TRANSFERASE INHIBITOR 09-SEP-14 4RA5 TITLE HUMAN PROTEIN KINASE C THETA IN COMPLEX WITH LIGAND COMPOUND 11A (6- TITLE 2 [(1,3-DIMETHYL-AZETIDIN-3-YL)-METHYL-AMINO]-4(R)-METHYL-7-PHENYL-2, TITLE 3 10-DIHYDRO-9-OXA-1,2,4A-TRIAZA-PHENANTHREN-3-ONE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN PROTEIN KINASE C THETA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE DOMAIN; COMPND 5 SYNONYM: NPKC-THETA; COMPND 6 EC: 2.7.11.13; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRKCQ, PRKCT; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS PKC THETA KINASE, KINASE DOMAIN, PROTEROS BIOSTRUCTURES GMBH, KEYWDS 2 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.A.ARGIRIADI,D.M.GEORGE REVDAT 2 04-FEB-15 4RA5 1 JRNL REVDAT 1 08-OCT-14 4RA5 0 JRNL AUTH D.M.GEORGE,E.C.BREINLINGER,M.A.ARGIRIADI,Y.ZHANG,J.WANG, JRNL AUTH 2 P.BANSAL-PAKALA,D.B.DUIGNAN,P.HONORE,Q.LANG,S.MITTELSTADT, JRNL AUTH 3 L.RUNDELL,A.SCHWARTZ,J.SUN,J.J.EDMUNDS JRNL TITL OPTIMIZED PROTEIN KINASE C THETA (PKC THETA ) INHIBITORS JRNL TITL 2 REVEAL ONLY MODEST ANTI-INFLAMMATORY EFFICACY IN A RODENT JRNL TITL 3 MODEL OF ARTHRITIS. JRNL REF J.MED.CHEM. V. 58 333 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 25254961 JRNL DOI 10.1021/JM5013006 REMARK 2 REMARK 2 RESOLUTION. 2.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 25436 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.500 REMARK 3 FREE R VALUE TEST SET COUNT : 912 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.61 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.68 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1853 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.3490 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.4690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5375 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 24 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.66000 REMARK 3 B22 (A**2) : -4.38000 REMARK 3 B33 (A**2) : -4.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.664 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.334 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.281 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.300 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5395 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 4728 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7321 ; 1.123 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10907 ; 0.914 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 652 ; 6.004 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 262 ;33.011 ;24.198 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 858 ;13.406 ;15.070 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;15.432 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 761 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6063 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1178 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 986 ; 0.158 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4457 ; 0.129 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2610 ; 0.161 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2726 ; 0.073 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 109 ; 0.119 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.040 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 4 ; 0.041 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 25 ; 0.094 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.082 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3248 ; 0.822 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1314 ; 0.157 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5186 ; 1.476 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2226 ; 2.228 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2131 ; 3.375 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 374 A 460 REMARK 3 ORIGIN FOR THE GROUP (A): -19.106 -4.777 -26.829 REMARK 3 T TENSOR REMARK 3 T11: -0.0771 T22: -0.0615 REMARK 3 T33: -0.0250 T12: 0.0871 REMARK 3 T13: -0.0398 T23: -0.0895 REMARK 3 L TENSOR REMARK 3 L11: 2.4044 L22: 2.2882 REMARK 3 L33: 4.7463 L12: 0.5170 REMARK 3 L13: 0.7783 L23: -0.8115 REMARK 3 S TENSOR REMARK 3 S11: 0.0379 S12: 0.0463 S13: -0.2119 REMARK 3 S21: 0.0189 S22: 0.1089 S23: -0.5792 REMARK 3 S31: 0.1407 S32: 0.6565 S33: -0.1469 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 461 A 707 REMARK 3 ORIGIN FOR THE GROUP (A): -37.795 -0.638 -31.250 REMARK 3 T TENSOR REMARK 3 T11: -0.1353 T22: -0.2535 REMARK 3 T33: -0.2140 T12: 0.0298 REMARK 3 T13: -0.0080 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 1.7371 L22: 2.2337 REMARK 3 L33: 2.6524 L12: -0.2393 REMARK 3 L13: -0.1475 L23: 0.4699 REMARK 3 S TENSOR REMARK 3 S11: 0.0433 S12: 0.0624 S13: -0.0018 REMARK 3 S21: -0.0106 S22: -0.0172 S23: -0.1186 REMARK 3 S31: 0.0433 S32: 0.0667 S33: -0.0261 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 375 B 460 REMARK 3 ORIGIN FOR THE GROUP (A): -29.072 -8.260 8.322 REMARK 3 T TENSOR REMARK 3 T11: 0.4663 T22: 0.3362 REMARK 3 T33: 0.1320 T12: -0.3092 REMARK 3 T13: -0.1321 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 4.6072 L22: 4.6222 REMARK 3 L33: 4.0346 L12: -0.3033 REMARK 3 L13: -1.8143 L23: 0.0822 REMARK 3 S TENSOR REMARK 3 S11: 0.2970 S12: -0.7385 S13: -0.4829 REMARK 3 S21: 0.4763 S22: -0.2808 S23: 0.4574 REMARK 3 S31: 1.0198 S32: -0.1338 S33: -0.0161 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 461 B 701 REMARK 3 ORIGIN FOR THE GROUP (A): -29.263 14.938 7.512 REMARK 3 T TENSOR REMARK 3 T11: -0.1237 T22: 0.1887 REMARK 3 T33: 0.0929 T12: -0.1652 REMARK 3 T13: 0.0128 T23: -0.1078 REMARK 3 L TENSOR REMARK 3 L11: 0.9696 L22: 4.4229 REMARK 3 L33: 4.1149 L12: 0.8538 REMARK 3 L13: 1.0040 L23: 1.6694 REMARK 3 S TENSOR REMARK 3 S11: 0.2489 S12: -0.1652 S13: 0.0960 REMARK 3 S21: 0.4308 S22: -0.4616 S23: 0.7579 REMARK 3 S31: 0.4589 S32: -0.6504 S33: 0.2126 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RA5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-14. REMARK 100 THE RCSB ID CODE IS RCSB087091. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00001 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26584 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.610 REMARK 200 RESOLUTION RANGE LOW (A) : 73.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.44400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, MGCL2, SODIUM ACETATE AND REMARK 280 SODIUM MALONATE, PH 4.25, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.41100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.77350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.51300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.77350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.41100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.51300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 374 REMARK 465 CYS B 661 REMARK 465 SER B 662 REMARK 465 ASN B 663 REMARK 465 PHE B 664 REMARK 465 ASP B 665 REMARK 465 LYS B 666 REMARK 465 GLU B 667 REMARK 465 PHE B 668 REMARK 465 LEU B 669 REMARK 465 ASN B 670 REMARK 465 GLU B 671 REMARK 465 LYS B 672 REMARK 465 PHE B 677 REMARK 465 ALA B 678 REMARK 465 ASP B 679 REMARK 465 GLU B 702 REMARK 465 ARG B 703 REMARK 465 LEU B 704 REMARK 465 ILE B 705 REMARK 465 SER B 706 REMARK 465 HIS B 707 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 374 CG CD CE NZ REMARK 480 LYS A 376 CG CD CE NZ REMARK 480 ILE A 377 CD1 REMARK 480 LYS A 384 NZ REMARK 480 LYS A 388 CE NZ REMARK 480 LYS A 400 CD CE NZ REMARK 480 LYS A 401 CG CD CE NZ REMARK 480 LYS A 429 NZ REMARK 480 GLU A 437 CD OE1 OE2 REMARK 480 LYS A 451 CG CD CE NZ REMARK 480 LYS A 498 NZ REMARK 480 LYS A 514 CD CE NZ REMARK 480 LYS A 555 NZ REMARK 480 ARG A 600 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 604 CE NZ REMARK 480 GLU A 617 CD OE1 OE2 REMARK 480 ARG A 625 CZ NH1 NH2 REMARK 480 ARG A 652 CZ NH1 NH2 REMARK 480 LYS A 654 CD CE NZ REMARK 480 LYS A 656 CG CD CE NZ REMARK 480 ASP A 665 CG OD1 OD2 REMARK 480 GLU A 667 CD OE1 OE2 REMARK 480 LYS A 672 CD CE NZ REMARK 480 ARG A 680 CG CD NE CZ NH1 NH2 REMARK 480 GLN A 688 CG CD OE1 NE2 REMARK 480 ARG A 703 CZ NH1 NH2 REMARK 480 LEU A 704 CG CD1 CD2 REMARK 480 ILE A 705 CG1 CG2 CD1 REMARK 480 LEU B 375 CG CD1 CD2 REMARK 480 LYS B 376 CG CD CE NZ REMARK 480 ILE B 377 CD1 REMARK 480 LYS B 384 CD CE NZ REMARK 480 LYS B 388 CD CE NZ REMARK 480 SER B 390 OG REMARK 480 LYS B 400 CG CD CE NZ REMARK 480 LYS B 401 CG CD CE NZ REMARK 480 ASN B 403 CG OD1 ND2 REMARK 480 ILE B 408 CD1 REMARK 480 LYS B 412 CG CD CE NZ REMARK 480 LYS B 413 CG CD CE NZ REMARK 480 ASP B 414 CG OD1 OD2 REMARK 480 VAL B 416 CG1 CG2 REMARK 480 LEU B 417 CG CD1 CD2 REMARK 480 MET B 418 CG SD CE REMARK 480 ASP B 419 CG OD1 OD2 REMARK 480 ASP B 420 CG OD1 OD2 REMARK 480 VAL B 422 CG1 CG2 REMARK 480 LYS B 429 CG CD CE NZ REMARK 480 SER B 433 OG REMARK 480 GLU B 437 CG CD OE1 OE2 REMARK 480 LYS B 451 CG CD CE NZ REMARK 480 GLU B 452 CD OE1 OE2 REMARK 480 LEU B 454 CD1 CD2 REMARK 480 ILE B 488 CD1 REMARK 480 LYS B 498 CG CD CE NZ REMARK 480 ILE B 500 CD1 REMARK 480 LYS B 527 CD CE NZ REMARK 480 LEU B 531 CG CD1 CD2 REMARK 480 LYS B 535 CE NZ REMARK 480 LYS B 555 CG CD CE NZ REMARK 480 LYS B 604 CD CE NZ REMARK 480 GLU B 617 CG CD OE1 OE2 REMARK 480 GLU B 619 CG CD OE1 OE2 REMARK 480 LYS B 620 CE NZ REMARK 480 ARG B 625 CD NE CZ NH1 NH2 REMARK 480 GLN B 630 CD OE1 NE2 REMARK 480 LYS B 654 CG CD CE NZ REMARK 480 SER B 657 OG REMARK 480 ARG B 674 CG CD NE CZ NH1 NH2 REMARK 480 LEU B 675 CD1 CD2 REMARK 480 ARG B 680 CD NE CZ NH1 NH2 REMARK 480 LEU B 682 CG CD1 CD2 REMARK 480 ILE B 683 CG1 CG2 CD1 REMARK 480 ASN B 684 CG OD1 ND2 REMARK 480 SER B 685 OG REMARK 480 MET B 686 CG SD CE REMARK 480 ASP B 687 CG OD1 OD2 REMARK 480 GLN B 688 CG CD OE1 NE2 REMARK 480 ASN B 689 CG OD1 ND2 REMARK 480 MET B 690 CG SD CE REMARK 480 PHE B 691 CG CD1 CD2 CE1 CE2 CZ REMARK 480 ARG B 692 CG CD NE CZ NH1 NH2 REMARK 480 ASN B 693 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 474 -39.59 71.18 REMARK 500 ARG A 503 -7.02 72.03 REMARK 500 ASP A 522 80.63 60.37 REMARK 500 ASP A 533 54.87 -92.39 REMARK 500 ASN A 557 -153.26 -123.65 REMARK 500 ASP A 679 92.51 -64.69 REMARK 500 PHE A 691 42.03 -106.56 REMARK 500 LYS B 400 -79.67 -53.43 REMARK 500 ASP B 421 58.13 -105.43 REMARK 500 HIS B 474 -64.53 63.18 REMARK 500 ARG B 503 -2.05 71.71 REMARK 500 ASP B 522 74.37 61.76 REMARK 500 ASN B 557 -161.35 -128.20 REMARK 500 SER B 657 72.71 57.54 REMARK 500 PHE B 691 48.30 -94.45 REMARK 500 PRO B 699 -28.08 -36.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 802 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 916 O REMARK 620 2 HOH A 915 O 78.1 REMARK 620 3 ASP A 594 OD2 60.8 82.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3L0 A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3L0 B 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Q9S RELATED DB: PDB REMARK 900 RELATED ID: 4Q9Z RELATED DB: PDB REMARK 900 RELATED ID: 4RA4 RELATED DB: PDB DBREF 4RA5 A 374 706 UNP Q04759 KPCT_HUMAN 374 706 DBREF 4RA5 B 374 706 UNP Q04759 KPCT_HUMAN 374 706 SEQADV 4RA5 GLU A 381 UNP Q04759 ILE 381 ENGINEERED MUTATION SEQADV 4RA5 GLU A 538 UNP Q04759 THR 538 ENGINEERED MUTATION SEQADV 4RA5 HIS A 707 UNP Q04759 EXPRESSION TAG SEQADV 4RA5 GLU B 381 UNP Q04759 ILE 381 ENGINEERED MUTATION SEQADV 4RA5 GLU B 538 UNP Q04759 THR 538 ENGINEERED MUTATION SEQADV 4RA5 HIS B 707 UNP Q04759 EXPRESSION TAG SEQRES 1 A 334 LYS LEU LYS ILE GLU ASP PHE GLU LEU HIS LYS MET LEU SEQRES 2 A 334 GLY LYS GLY SER PHE GLY LYS VAL PHE LEU ALA GLU PHE SEQRES 3 A 334 LYS LYS THR ASN GLN PHE PHE ALA ILE LYS ALA LEU LYS SEQRES 4 A 334 LYS ASP VAL VAL LEU MET ASP ASP ASP VAL GLU CYS THR SEQRES 5 A 334 MET VAL GLU LYS ARG VAL LEU SER LEU ALA TRP GLU HIS SEQRES 6 A 334 PRO PHE LEU THR HIS MET PHE CYS THR PHE GLN THR LYS SEQRES 7 A 334 GLU ASN LEU PHE PHE VAL MET GLU TYR LEU ASN GLY GLY SEQRES 8 A 334 ASP LEU MET TYR HIS ILE GLN SER CYS HIS LYS PHE ASP SEQRES 9 A 334 LEU SER ARG ALA THR PHE TYR ALA ALA GLU ILE ILE LEU SEQRES 10 A 334 GLY LEU GLN PHE LEU HIS SER LYS GLY ILE VAL TYR ARG SEQRES 11 A 334 ASP LEU LYS LEU ASP ASN ILE LEU LEU ASP LYS ASP GLY SEQRES 12 A 334 HIS ILE LYS ILE ALA ASP PHE GLY MET CYS LYS GLU ASN SEQRES 13 A 334 MET LEU GLY ASP ALA LYS THR ASN GLU PHE CYS GLY THR SEQRES 14 A 334 PRO ASP TYR ILE ALA PRO GLU ILE LEU LEU GLY GLN LYS SEQRES 15 A 334 TYR ASN HIS SER VAL ASP TRP TRP SER PHE GLY VAL LEU SEQRES 16 A 334 LEU TYR GLU MET LEU ILE GLY GLN SER PRO PHE HIS GLY SEQRES 17 A 334 GLN ASP GLU GLU GLU LEU PHE HIS SER ILE ARG MET ASP SEQRES 18 A 334 ASN PRO PHE TYR PRO ARG TRP LEU GLU LYS GLU ALA LYS SEQRES 19 A 334 ASP LEU LEU VAL LYS LEU PHE VAL ARG GLU PRO GLU LYS SEQRES 20 A 334 ARG LEU GLY VAL ARG GLY ASP ILE ARG GLN HIS PRO LEU SEQRES 21 A 334 PHE ARG GLU ILE ASN TRP GLU GLU LEU GLU ARG LYS GLU SEQRES 22 A 334 ILE ASP PRO PRO PHE ARG PRO LYS VAL LYS SER PRO PHE SEQRES 23 A 334 ASP CYS SER ASN PHE ASP LYS GLU PHE LEU ASN GLU LYS SEQRES 24 A 334 PRO ARG LEU SEP PHE ALA ASP ARG ALA LEU ILE ASN SER SEQRES 25 A 334 MET ASP GLN ASN MET PHE ARG ASN PHE SEP PHE MET ASN SEQRES 26 A 334 PRO GLY MET GLU ARG LEU ILE SER HIS SEQRES 1 B 334 LYS LEU LYS ILE GLU ASP PHE GLU LEU HIS LYS MET LEU SEQRES 2 B 334 GLY LYS GLY SER PHE GLY LYS VAL PHE LEU ALA GLU PHE SEQRES 3 B 334 LYS LYS THR ASN GLN PHE PHE ALA ILE LYS ALA LEU LYS SEQRES 4 B 334 LYS ASP VAL VAL LEU MET ASP ASP ASP VAL GLU CYS THR SEQRES 5 B 334 MET VAL GLU LYS ARG VAL LEU SER LEU ALA TRP GLU HIS SEQRES 6 B 334 PRO PHE LEU THR HIS MET PHE CYS THR PHE GLN THR LYS SEQRES 7 B 334 GLU ASN LEU PHE PHE VAL MET GLU TYR LEU ASN GLY GLY SEQRES 8 B 334 ASP LEU MET TYR HIS ILE GLN SER CYS HIS LYS PHE ASP SEQRES 9 B 334 LEU SER ARG ALA THR PHE TYR ALA ALA GLU ILE ILE LEU SEQRES 10 B 334 GLY LEU GLN PHE LEU HIS SER LYS GLY ILE VAL TYR ARG SEQRES 11 B 334 ASP LEU LYS LEU ASP ASN ILE LEU LEU ASP LYS ASP GLY SEQRES 12 B 334 HIS ILE LYS ILE ALA ASP PHE GLY MET CYS LYS GLU ASN SEQRES 13 B 334 MET LEU GLY ASP ALA LYS THR ASN GLU PHE CYS GLY THR SEQRES 14 B 334 PRO ASP TYR ILE ALA PRO GLU ILE LEU LEU GLY GLN LYS SEQRES 15 B 334 TYR ASN HIS SER VAL ASP TRP TRP SER PHE GLY VAL LEU SEQRES 16 B 334 LEU TYR GLU MET LEU ILE GLY GLN SER PRO PHE HIS GLY SEQRES 17 B 334 GLN ASP GLU GLU GLU LEU PHE HIS SER ILE ARG MET ASP SEQRES 18 B 334 ASN PRO PHE TYR PRO ARG TRP LEU GLU LYS GLU ALA LYS SEQRES 19 B 334 ASP LEU LEU VAL LYS LEU PHE VAL ARG GLU PRO GLU LYS SEQRES 20 B 334 ARG LEU GLY VAL ARG GLY ASP ILE ARG GLN HIS PRO LEU SEQRES 21 B 334 PHE ARG GLU ILE ASN TRP GLU GLU LEU GLU ARG LYS GLU SEQRES 22 B 334 ILE ASP PRO PRO PHE ARG PRO LYS VAL LYS SER PRO PHE SEQRES 23 B 334 ASP CYS SER ASN PHE ASP LYS GLU PHE LEU ASN GLU LYS SEQRES 24 B 334 PRO ARG LEU SEP PHE ALA ASP ARG ALA LEU ILE ASN SER SEQRES 25 B 334 MET ASP GLN ASN MET PHE ARG ASN PHE SEP PHE MET ASN SEQRES 26 B 334 PRO GLY MET GLU ARG LEU ILE SER HIS MODRES 4RA5 SEP A 676 SER PHOSPHOSERINE MODRES 4RA5 SEP A 695 SER PHOSPHOSERINE MODRES 4RA5 SEP B 676 SER PHOSPHOSERINE MODRES 4RA5 SEP B 695 SER PHOSPHOSERINE HET SEP A 676 10 HET SEP A 695 10 HET SEP B 676 10 HET SEP B 695 10 HET 3L0 A 801 30 HET NA A 802 1 HET EDO A 803 4 HET EDO A 804 4 HET 3L0 B 801 30 HETNAM SEP PHOSPHOSERINE HETNAM 3L0 (1R)-9-[(1,3-DIMETHYLAZETIDIN-3-YL)(METHYL)AMINO]-1- HETNAM 2 3L0 METHYL-8-PHENYL-3,5-DIHYDRO[1,2,4]TRIAZINO[3,4-C][1, HETNAM 3 3L0 4]BENZOXAZIN-2(1H)-ONE HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN SEP PHOSPHONOSERINE HETSYN 3L0 (6-[(1,3-DIMETHYL-AZETIDIN-3-YL)-METHYL-AMINO]-4(R)- HETSYN 2 3L0 METHYL-7-PHENYL-2,10-DIHYDRO-9-OXA-1,2,4A-TRIAZA- HETSYN 3 3L0 PHENANTHREN-3-ONE) HETSYN EDO ETHYLENE GLYCOL FORMUL 1 SEP 4(C3 H8 N O6 P) FORMUL 3 3L0 2(C23 H27 N5 O2) FORMUL 4 NA NA 1+ FORMUL 5 EDO 2(C2 H6 O2) FORMUL 8 HOH *24(H2 O) HELIX 1 1 LYS A 376 GLU A 378 5 3 HELIX 2 2 LYS A 413 ASP A 419 1 7 HELIX 3 3 ASP A 421 ALA A 435 1 15 HELIX 4 4 TRP A 436 HIS A 438 5 3 HELIX 5 5 LEU A 466 HIS A 474 1 9 HELIX 6 6 ASP A 477 LYS A 498 1 22 HELIX 7 7 LYS A 506 ASP A 508 5 3 HELIX 8 8 THR A 542 ILE A 546 5 5 HELIX 9 9 ALA A 547 LEU A 552 1 6 HELIX 10 10 HIS A 558 GLY A 575 1 18 HELIX 11 11 ASP A 583 ASP A 594 1 12 HELIX 12 12 GLU A 603 PHE A 614 1 12 HELIX 13 13 GLU A 617 ARG A 621 5 5 HELIX 14 14 ASP A 627 ARG A 635 5 9 HELIX 15 15 ASN A 638 ARG A 644 1 7 HELIX 16 16 ASP A 665 GLU A 671 1 7 HELIX 17 17 ASP A 679 MET A 686 1 8 HELIX 18 18 ASN A 698 HIS A 707 1 10 HELIX 19 19 LYS B 376 GLU B 378 5 3 HELIX 20 20 LYS B 413 ASP B 420 1 8 HELIX 21 21 ASP B 421 TRP B 436 1 16 HELIX 22 22 ASP B 465 HIS B 474 1 10 HELIX 23 23 ASP B 477 LYS B 498 1 22 HELIX 24 24 LYS B 506 ASP B 508 5 3 HELIX 25 25 THR B 542 ILE B 546 5 5 HELIX 26 26 ALA B 547 LEU B 552 1 6 HELIX 27 27 HIS B 558 GLY B 575 1 18 HELIX 28 28 ASP B 583 ASP B 594 1 12 HELIX 29 29 GLU B 603 PHE B 614 1 12 HELIX 30 30 GLU B 617 ARG B 621 5 5 HELIX 31 31 ASP B 627 ARG B 635 5 9 HELIX 32 32 ASN B 638 ARG B 644 1 7 HELIX 33 33 ALA B 681 SER B 685 1 5 HELIX 34 34 ASP B 687 ARG B 692 5 6 SHEET 1 A 6 PHE A 380 LYS A 388 0 SHEET 2 A 6 LYS A 393 PHE A 399 -1 O GLU A 398 N GLU A 381 SHEET 3 A 6 PHE A 405 LYS A 412 -1 O PHE A 406 N ALA A 397 SHEET 4 A 6 ASN A 453 MET A 458 -1 O MET A 458 N ALA A 407 SHEET 5 A 6 MET A 444 GLN A 449 -1 N PHE A 448 O PHE A 455 SHEET 6 A 6 PHE A 696 MET A 697 -1 O PHE A 696 N THR A 447 SHEET 1 B 3 GLY A 464 ASP A 465 0 SHEET 2 B 3 ILE A 510 LEU A 512 -1 O LEU A 512 N GLY A 464 SHEET 3 B 3 ILE A 518 ILE A 520 -1 O LYS A 519 N LEU A 511 SHEET 1 C 6 PHE B 380 LYS B 388 0 SHEET 2 C 6 GLY B 392 PHE B 399 -1 O LEU B 396 N LYS B 384 SHEET 3 C 6 PHE B 405 LYS B 412 -1 O PHE B 406 N ALA B 397 SHEET 4 C 6 ASN B 453 MET B 458 -1 O MET B 458 N ALA B 407 SHEET 5 C 6 MET B 444 GLN B 449 -1 N PHE B 445 O VAL B 457 SHEET 6 C 6 PHE B 696 MET B 697 -1 O PHE B 696 N THR B 447 SHEET 1 D 2 ILE B 510 LEU B 512 0 SHEET 2 D 2 ILE B 518 ILE B 520 -1 O LYS B 519 N LEU B 511 LINK C LEU A 675 N SEP A 676 1555 1555 1.33 LINK C SEP A 676 N PHE A 677 1555 1555 1.33 LINK C PHE A 694 N SEP A 695 1555 1555 1.33 LINK C SEP A 695 N PHE A 696 1555 1555 1.33 LINK C LEU B 675 N SEP B 676 1555 1555 1.33 LINK C PHE B 694 N SEP B 695 1555 1555 1.34 LINK C SEP B 695 N PHE B 696 1555 1555 1.33 LINK NA NA A 802 O HOH A 916 1555 1555 2.36 LINK NA NA A 802 O HOH A 915 1555 1555 2.38 LINK OD2 ASP A 594 NA NA A 802 1555 1555 2.89 SITE 1 AC1 12 LEU A 386 GLY A 387 LYS A 388 VAL A 394 SITE 2 AC1 12 ALA A 407 MET A 458 GLU A 459 LEU A 461 SITE 3 AC1 12 ASP A 508 LEU A 511 ASP A 522 PHE A 664 SITE 1 AC2 3 ASP A 594 HOH A 915 HOH A 916 SITE 1 AC3 4 ASP A 504 LYS A 506 ASP A 508 ASP A 522 SITE 1 AC4 2 GLY A 389 SER A 390 SITE 1 AC5 9 LEU B 386 LYS B 388 THR B 442 MET B 458 SITE 2 AC5 9 GLU B 459 LEU B 461 ASP B 465 ASP B 508 SITE 3 AC5 9 ASP B 522 CRYST1 74.822 77.026 147.547 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013365 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012983 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006778 0.00000