HEADER VIRAL PROTEIN 19-SEP-14 4RDL TITLE CRYSTAL STRUCTURE OF NOROVIRUS BOXER P DOMAIN IN COMPLEX WITH LEWIS Y TITLE 2 TETRASACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PROTRUSION DOMAIN, UNP RESIDUES 227-526; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN CALICIVIRUS NLV/BOXER/2001/US; SOURCE 3 ORGANISM_TAXID: 207658; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS MIXED ALPHA/BETA STRUCTURE, RECEPTOR BINDING, HBGA, VIRUS CAPSID, KEYWDS 2 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.HAO,Y.CHEN,M.XIA,W.LIU,M.TAN,X.JIANG,X.LI REVDAT 4 08-NOV-23 4RDL 1 REMARK REVDAT 3 24-AUG-22 4RDL 1 JRNL HETSYN REVDAT 2 29-JUL-20 4RDL 1 COMPND REMARK SEQADV HETNAM REVDAT 2 2 1 LINK SITE ATOM REVDAT 1 14-JAN-15 4RDL 0 JRNL AUTH N.HAO,Y.CHEN,M.XIA,M.TAN,W.LIU,X.GUAN,X.JIANG,X.LI,Z.RAO JRNL TITL CRYSTAL STRUCTURES OF GI.8 BOXER VIRUS P DIMERS IN COMPLEX JRNL TITL 2 WITH HBGAS, A NOVEL EVOLUTIONARY PATH SELECTED BY THE LEWIS JRNL TITL 3 EPITOPE. JRNL REF PROTEIN CELL V. 6 101 2015 JRNL REFN ESSN 1674-8018 JRNL PMID 25547362 JRNL DOI 10.1007/S13238-014-0126-0 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 129411 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.131 REMARK 3 R VALUE (WORKING SET) : 0.130 REMARK 3 FREE R VALUE : 0.151 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 6496 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.7266 - 4.5013 1.00 4215 228 0.1669 0.1666 REMARK 3 2 4.5013 - 3.5732 1.00 4159 217 0.1332 0.1392 REMARK 3 3 3.5732 - 3.1216 1.00 4130 213 0.1385 0.1473 REMARK 3 4 3.1216 - 2.8362 1.00 4125 211 0.1456 0.1668 REMARK 3 5 2.8362 - 2.6330 1.00 4142 220 0.1482 0.1574 REMARK 3 6 2.6330 - 2.4777 1.00 4087 216 0.1407 0.1605 REMARK 3 7 2.4777 - 2.3536 1.00 4137 213 0.1335 0.1483 REMARK 3 8 2.3536 - 2.2512 1.00 4067 217 0.1226 0.1546 REMARK 3 9 2.2512 - 2.1645 1.00 4134 203 0.1246 0.1293 REMARK 3 10 2.1645 - 2.0898 1.00 4082 216 0.1285 0.1517 REMARK 3 11 2.0898 - 2.0245 1.00 4107 209 0.1233 0.1446 REMARK 3 12 2.0245 - 1.9666 1.00 4103 207 0.1250 0.1678 REMARK 3 13 1.9666 - 1.9148 1.00 4065 230 0.1196 0.1582 REMARK 3 14 1.9148 - 1.8681 1.00 4088 236 0.1168 0.1467 REMARK 3 15 1.8681 - 1.8257 1.00 4095 211 0.1045 0.1168 REMARK 3 16 1.8257 - 1.7868 1.00 4117 201 0.0988 0.1366 REMARK 3 17 1.7868 - 1.7511 1.00 4057 245 0.0995 0.1272 REMARK 3 18 1.7511 - 1.7180 1.00 4032 238 0.0954 0.1247 REMARK 3 19 1.7180 - 1.6873 1.00 4101 236 0.0950 0.1404 REMARK 3 20 1.6873 - 1.6587 1.00 4055 229 0.0992 0.1537 REMARK 3 21 1.6587 - 1.6320 1.00 4033 211 0.1037 0.1392 REMARK 3 22 1.6320 - 1.6069 1.00 4174 183 0.1037 0.1389 REMARK 3 23 1.6069 - 1.5832 1.00 4042 218 0.1086 0.1504 REMARK 3 24 1.5832 - 1.5609 1.00 4070 228 0.1116 0.1621 REMARK 3 25 1.5609 - 1.5398 1.00 4101 207 0.1111 0.1568 REMARK 3 26 1.5398 - 1.5198 1.00 4095 193 0.1157 0.1512 REMARK 3 27 1.5198 - 1.5008 1.00 4080 215 0.1188 0.1718 REMARK 3 28 1.5008 - 1.4828 1.00 4073 213 0.1232 0.1458 REMARK 3 29 1.4828 - 1.4655 1.00 4096 223 0.1307 0.1737 REMARK 3 30 1.4655 - 1.4490 1.00 4053 209 0.1532 0.1929 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 38.40 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.62560 REMARK 3 B22 (A**2) : 1.62560 REMARK 3 B33 (A**2) : -3.25120 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4822 REMARK 3 ANGLE : 1.140 6612 REMARK 3 CHIRALITY : 0.075 746 REMARK 3 PLANARITY : 0.005 870 REMARK 3 DIHEDRAL : 11.841 1702 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RDL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087213. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 129481 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.449 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 0.47300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4RDJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M LICL, 18%(W/V) PEG 3350, 10%(V/V) REMARK 280 MPD, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.67333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.34667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.51000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 54.18333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 10.83667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 219 REMARK 465 PRO A 220 REMARK 465 LEU A 221 REMARK 465 GLY A 222 REMARK 465 SER A 223 REMARK 465 PRO A 224 REMARK 465 GLU A 225 REMARK 465 PHE A 226 REMARK 465 GLN A 227 REMARK 465 ARG A 228 REMARK 465 THR A 229 REMARK 465 GLY B 219 REMARK 465 PRO B 220 REMARK 465 LEU B 221 REMARK 465 GLY B 222 REMARK 465 SER B 223 REMARK 465 PRO B 224 REMARK 465 GLU B 225 REMARK 465 PHE B 226 REMARK 465 GLN B 227 REMARK 465 ARG B 228 REMARK 465 THR B 229 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 1060 O HOH B 1104 1.87 REMARK 500 O HOH B 1024 O HOH B 1051 1.88 REMARK 500 O HOH B 1039 O HOH B 1047 1.89 REMARK 500 O HOH B 1107 O HOH B 1111 1.89 REMARK 500 O HOH A 878 O HOH A 1052 1.96 REMARK 500 O HOH A 737 O HOH A 967 2.00 REMARK 500 O HOH A 1095 O HOH A 1101 2.03 REMARK 500 O HOH B 1064 O HOH B 1070 2.03 REMARK 500 O HOH A 1043 O HOH A 1057 2.05 REMARK 500 O HOH B 1057 O HOH B 1062 2.05 REMARK 500 O HOH B 1046 O HOH B 1111 2.06 REMARK 500 O HOH B 1028 O HOH B 1043 2.06 REMARK 500 O HOH B 1017 O HOH B 1066 2.06 REMARK 500 O HOH B 758 O HOH B 1104 2.13 REMARK 500 O HOH B 1034 O HOH B 1067 2.15 REMARK 500 OE1 GLU B 385 O HOH B 976 2.17 REMARK 500 O HOH A 1082 O HOH B 1101 2.17 REMARK 500 O HOH A 1078 O HOH B 1081 2.17 REMARK 500 O HOH A 966 O HOH A 1056 2.18 REMARK 500 OE1 GLU A 377 O HOH A 862 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 236 58.32 -93.38 REMARK 500 GLN A 265 49.70 -141.79 REMARK 500 THR A 282 -168.51 -130.00 REMARK 500 SER A 358 53.71 -90.79 REMARK 500 ASP A 360 158.65 74.59 REMARK 500 SER A 411 -139.32 54.27 REMARK 500 SER A 443 -15.51 91.05 REMARK 500 ASN A 444 74.77 -156.62 REMARK 500 PRO A 445 43.30 -83.29 REMARK 500 ASN B 236 55.75 -90.67 REMARK 500 GLN B 265 51.40 -143.07 REMARK 500 ASP B 360 159.38 74.64 REMARK 500 LEU B 413 -116.33 46.02 REMARK 500 SER B 443 -6.74 91.47 REMARK 500 ASN B 444 66.22 -162.92 REMARK 500 PRO B 445 43.46 -84.12 REMARK 500 ASN B 500 -159.18 -122.67 REMARK 500 ALA B 501 -71.43 -55.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RDJ RELATED DB: PDB REMARK 900 RELATED ID: 4RDK RELATED DB: PDB DBREF 4RDL A 227 526 UNP Q8BCA3 Q8BCA3_9CALI 227 526 DBREF 4RDL B 227 526 UNP Q8BCA3 Q8BCA3_9CALI 227 526 SEQADV 4RDL GLY A 219 UNP Q8BCA3 EXPRESSION TAG SEQADV 4RDL PRO A 220 UNP Q8BCA3 EXPRESSION TAG SEQADV 4RDL LEU A 221 UNP Q8BCA3 EXPRESSION TAG SEQADV 4RDL GLY A 222 UNP Q8BCA3 EXPRESSION TAG SEQADV 4RDL SER A 223 UNP Q8BCA3 EXPRESSION TAG SEQADV 4RDL PRO A 224 UNP Q8BCA3 EXPRESSION TAG SEQADV 4RDL GLU A 225 UNP Q8BCA3 EXPRESSION TAG SEQADV 4RDL PHE A 226 UNP Q8BCA3 EXPRESSION TAG SEQADV 4RDL GLY B 219 UNP Q8BCA3 EXPRESSION TAG SEQADV 4RDL PRO B 220 UNP Q8BCA3 EXPRESSION TAG SEQADV 4RDL LEU B 221 UNP Q8BCA3 EXPRESSION TAG SEQADV 4RDL GLY B 222 UNP Q8BCA3 EXPRESSION TAG SEQADV 4RDL SER B 223 UNP Q8BCA3 EXPRESSION TAG SEQADV 4RDL PRO B 224 UNP Q8BCA3 EXPRESSION TAG SEQADV 4RDL GLU B 225 UNP Q8BCA3 EXPRESSION TAG SEQADV 4RDL PHE B 226 UNP Q8BCA3 EXPRESSION TAG SEQRES 1 A 308 GLY PRO LEU GLY SER PRO GLU PHE GLN ARG THR LYS PRO SEQRES 2 A 308 PHE SER VAL PRO ASN ILE PRO MET ASN LEU MET SER ASN SEQRES 3 A 308 SER ARG VAL PRO MET LEU ILE ASP GLY MET MET VAL SER SEQRES 4 A 308 ASN ASP GLN ASN GLN VAL PRO GLN PHE GLN ASN GLY ARG SEQRES 5 A 308 VAL THR LEU ASP GLY GLN LEU GLN GLY THR THR THR VAL SEQRES 6 A 308 SER ALA ALA CYS ILE ALA ARG MET ARG GLY ARG ILE PHE SEQRES 7 A 308 ASN ASN ASN GLY ASN TYR GLY VAL ASN LEU ALA GLU LEU SEQRES 8 A 308 ASP GLY ASN PRO TYR HIS ALA PHE ASP SER PRO ALA PRO SEQRES 9 A 308 LEU GLY PHE PRO ASP PHE GLY ASN CYS ASP LEU HIS MET SEQRES 10 A 308 THR PHE VAL LYS ILE ASN PRO THR GLU LEU SER THR GLY SEQRES 11 A 308 ASP PRO SER GLY LYS VAL VAL ILE HIS SER TYR ASP ALA SEQRES 12 A 308 THR PHE ALA PRO HIS LEU GLY THR VAL LYS LEU GLU ASP SEQRES 13 A 308 ASN ASN GLU LEU ASP GLN PHE VAL GLY LYS GLU VAL VAL SEQRES 14 A 308 LEU GLU LEU THR TRP VAL SER ASN ARG THR GLY ALA THR SEQRES 15 A 308 LEU ASN LEU TRP ALA VAL PRO ASN TYR GLY SER ASN LEU SEQRES 16 A 308 THR GLN ALA SER GLN LEU ALA PRO PRO ILE TYR PRO PRO SEQRES 17 A 308 GLY PHE GLY GLU ALA ILE VAL TYR PHE THR SER THR PHE SEQRES 18 A 308 PRO THR VAL SER ASN PRO LYS VAL PRO CYS THR LEU PRO SEQRES 19 A 308 GLN GLU PHE VAL SER HIS PHE VAL ASN GLU GLN ALA PRO SEQRES 20 A 308 THR ARG GLY ASP ALA ALA LEU LEU HIS TYR VAL ASP PRO SEQRES 21 A 308 ASP THR HIS ARG ASN LEU GLY GLU PHE LYS MET TYR PRO SEQRES 22 A 308 GLU GLY TYR MET THR CYS VAL PRO ASN ALA GLY GLY GLY SEQRES 23 A 308 PRO GLN THR LEU PRO ILE ASN GLY VAL PHE VAL PHE ILE SEQRES 24 A 308 SER TRP VAL SER ARG TYR TYR GLN LEU SEQRES 1 B 308 GLY PRO LEU GLY SER PRO GLU PHE GLN ARG THR LYS PRO SEQRES 2 B 308 PHE SER VAL PRO ASN ILE PRO MET ASN LEU MET SER ASN SEQRES 3 B 308 SER ARG VAL PRO MET LEU ILE ASP GLY MET MET VAL SER SEQRES 4 B 308 ASN ASP GLN ASN GLN VAL PRO GLN PHE GLN ASN GLY ARG SEQRES 5 B 308 VAL THR LEU ASP GLY GLN LEU GLN GLY THR THR THR VAL SEQRES 6 B 308 SER ALA ALA CYS ILE ALA ARG MET ARG GLY ARG ILE PHE SEQRES 7 B 308 ASN ASN ASN GLY ASN TYR GLY VAL ASN LEU ALA GLU LEU SEQRES 8 B 308 ASP GLY ASN PRO TYR HIS ALA PHE ASP SER PRO ALA PRO SEQRES 9 B 308 LEU GLY PHE PRO ASP PHE GLY ASN CYS ASP LEU HIS MET SEQRES 10 B 308 THR PHE VAL LYS ILE ASN PRO THR GLU LEU SER THR GLY SEQRES 11 B 308 ASP PRO SER GLY LYS VAL VAL ILE HIS SER TYR ASP ALA SEQRES 12 B 308 THR PHE ALA PRO HIS LEU GLY THR VAL LYS LEU GLU ASP SEQRES 13 B 308 ASN ASN GLU LEU ASP GLN PHE VAL GLY LYS GLU VAL VAL SEQRES 14 B 308 LEU GLU LEU THR TRP VAL SER ASN ARG THR GLY ALA THR SEQRES 15 B 308 LEU ASN LEU TRP ALA VAL PRO ASN TYR GLY SER ASN LEU SEQRES 16 B 308 THR GLN ALA SER GLN LEU ALA PRO PRO ILE TYR PRO PRO SEQRES 17 B 308 GLY PHE GLY GLU ALA ILE VAL TYR PHE THR SER THR PHE SEQRES 18 B 308 PRO THR VAL SER ASN PRO LYS VAL PRO CYS THR LEU PRO SEQRES 19 B 308 GLN GLU PHE VAL SER HIS PHE VAL ASN GLU GLN ALA PRO SEQRES 20 B 308 THR ARG GLY ASP ALA ALA LEU LEU HIS TYR VAL ASP PRO SEQRES 21 B 308 ASP THR HIS ARG ASN LEU GLY GLU PHE LYS MET TYR PRO SEQRES 22 B 308 GLU GLY TYR MET THR CYS VAL PRO ASN ALA GLY GLY GLY SEQRES 23 B 308 PRO GLN THR LEU PRO ILE ASN GLY VAL PHE VAL PHE ILE SEQRES 24 B 308 SER TRP VAL SER ARG TYR TYR GLN LEU HET NDG C 1 15 HET GAL C 2 11 HET FUC C 3 10 HET FUC C 4 10 HET NDG D 1 15 HET GAL D 2 11 HET FUC D 3 10 HET FUC D 4 10 HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NDG N-ACETYL-ALPHA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NDG ALPHA-D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2- HETSYN 3 NDG ACETAMIDO-2-DEOXY-GLUCOSE; 2-(ACETYLAMINO)-2-DEOXY-A- HETSYN 4 NDG D-GLUCOPYRANOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NDG 2(C8 H15 N O6) FORMUL 3 GAL 2(C6 H12 O6) FORMUL 3 FUC 4(C6 H12 O5) FORMUL 5 HOH *825(H2 O) HELIX 1 1 PRO A 238 MET A 242 5 5 HELIX 2 2 SER A 284 ILE A 288 5 5 HELIX 3 3 ASN A 341 LEU A 345 5 5 HELIX 4 4 PRO A 365 LEU A 367 5 3 HELIX 5 5 LEU A 378 VAL A 382 5 5 HELIX 6 6 PRO A 452 GLN A 463 1 12 HELIX 7 7 PRO B 238 MET B 242 5 5 HELIX 8 8 SER B 284 ILE B 288 5 5 HELIX 9 9 ASN B 341 LEU B 345 5 5 HELIX 10 10 PRO B 365 LEU B 367 5 3 HELIX 11 11 LEU B 378 VAL B 382 5 5 HELIX 12 12 PRO B 452 GLN B 463 1 12 HELIX 13 13 GLY B 504 LEU B 508 5 5 SHEET 1 A 3 GLY A 253 VAL A 256 0 SHEET 2 A 3 ALA A 431 THR A 438 -1 O TYR A 434 N MET A 255 SHEET 3 A 3 LYS A 446 CYS A 449 -1 O VAL A 447 N SER A 437 SHEET 1 B 6 GLY A 253 VAL A 256 0 SHEET 2 B 6 ALA A 431 THR A 438 -1 O TYR A 434 N MET A 255 SHEET 3 B 6 TYR A 494 CYS A 497 -1 O MET A 495 N VAL A 433 SHEET 4 B 6 ASN A 483 TYR A 490 -1 N TYR A 490 O TYR A 494 SHEET 5 B 6 ALA A 470 VAL A 476 -1 N TYR A 475 O LEU A 484 SHEET 6 B 6 VAL A 513 VAL A 520 -1 O VAL A 513 N VAL A 476 SHEET 1 C 7 SER A 351 HIS A 357 0 SHEET 2 C 7 CYS A 331 LYS A 339 -1 N MET A 335 O VAL A 354 SHEET 3 C 7 GLU A 385 ASN A 395 -1 O SER A 394 N ASP A 332 SHEET 4 C 7 ARG A 290 ASN A 298 -1 N MET A 291 O LEU A 388 SHEET 5 C 7 ASN A 301 ALA A 307 -1 O ASN A 301 N ASN A 298 SHEET 6 C 7 THR A 369 LEU A 372 -1 O VAL A 370 N VAL A 304 SHEET 7 C 7 PHE A 363 ALA A 364 -1 N ALA A 364 O THR A 369 SHEET 1 D 3 GLY B 253 MET B 255 0 SHEET 2 D 3 TYR B 434 THR B 438 -1 O TYR B 434 N MET B 255 SHEET 3 D 3 LYS B 446 CYS B 449 -1 O VAL B 447 N SER B 437 SHEET 1 E 7 SER B 351 HIS B 357 0 SHEET 2 E 7 CYS B 331 LYS B 339 -1 N MET B 335 O VAL B 354 SHEET 3 E 7 GLU B 385 ASN B 395 -1 O GLU B 389 N THR B 336 SHEET 4 E 7 ARG B 290 ASN B 298 -1 N GLY B 293 O VAL B 386 SHEET 5 E 7 ASN B 301 ALA B 307 -1 O ASN B 301 N ASN B 298 SHEET 6 E 7 THR B 369 LEU B 372 -1 O LEU B 372 N TYR B 302 SHEET 7 E 7 PHE B 363 ALA B 364 -1 N ALA B 364 O THR B 369 SHEET 1 F 5 ALA B 431 ILE B 432 0 SHEET 2 F 5 TYR B 494 CYS B 497 -1 O CYS B 497 N ALA B 431 SHEET 3 F 5 ASN B 483 TYR B 490 -1 N LYS B 488 O THR B 496 SHEET 4 F 5 ALA B 470 VAL B 476 -1 N TYR B 475 O LEU B 484 SHEET 5 F 5 VAL B 513 VAL B 520 -1 O SER B 518 N LEU B 472 LINK O4 NDG C 1 C1 GAL C 2 1555 1555 1.40 LINK O3 NDG C 1 C1 FUC C 4 1555 1555 1.41 LINK O2 GAL C 2 C1 FUC C 3 1555 1555 1.39 LINK O4 NDG D 1 C1 GAL D 2 1555 1555 1.37 LINK O3 NDG D 1 C1 FUC D 4 1555 1555 1.39 LINK O2 GAL D 2 C1 FUC D 3 1555 1555 1.43 CRYST1 140.390 140.390 65.020 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007123 0.004112 0.000000 0.00000 SCALE2 0.000000 0.008225 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015380 0.00000