HEADER OXIDOREDUCTASE 24-SEP-14 4RF2 TITLE CRYSTAL STRUCTURE OF NADP+ BOUND KETOREDUCTASE FROM LACTOBACILLUS TITLE 2 KEFIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADPH DEPENDENT R-SPECIFIC ALCOHOL DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: KETOREDUCTASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS KEFIRI; SOURCE 3 ORGANISM_TAXID: 33962; SOURCE 4 GENE: ADHR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PHIS8 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.TANG,N.TIBREWAL,D.CASCIO REVDAT 5 20-SEP-23 4RF2 1 REMARK SEQADV LINK REVDAT 4 06-JAN-16 4RF2 1 JRNL REVDAT 3 23-DEC-15 4RF2 1 JRNL REVDAT 2 25-NOV-15 4RF2 1 JRNL REVDAT 1 30-SEP-15 4RF2 0 JRNL AUTH E.L.NOEY,N.TIBREWAL,G.JIMENEZ-OSES,S.OSUNA,J.PARK,C.M.BOND, JRNL AUTH 2 D.CASCIO,J.LIANG,X.ZHANG,G.W.HUISMAN,Y.TANG,K.N.HOUK JRNL TITL ORIGINS OF STEREOSELECTIVITY IN EVOLVED KETOREDUCTASES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 E7065 2015 JRNL REFN ISSN 0027-8424 JRNL PMID 26644568 JRNL DOI 10.1073/PNAS.1507910112 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1555 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 68622 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3433 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 75.8222 - 6.1079 0.99 2861 151 0.2271 0.2434 REMARK 3 2 6.1079 - 4.8483 1.00 2737 143 0.2026 0.2257 REMARK 3 3 4.8483 - 4.2355 1.00 2683 142 0.1853 0.2036 REMARK 3 4 4.2355 - 3.8483 1.00 2678 141 0.1972 0.2460 REMARK 3 5 3.8483 - 3.5724 1.00 2655 140 0.2009 0.2348 REMARK 3 6 3.5724 - 3.3618 1.00 2660 140 0.2103 0.2401 REMARK 3 7 3.3618 - 3.1934 1.00 2645 139 0.2193 0.2218 REMARK 3 8 3.1934 - 3.0544 1.00 2628 138 0.2259 0.2193 REMARK 3 9 3.0544 - 2.9368 1.00 2620 138 0.2279 0.2467 REMARK 3 10 2.9368 - 2.8355 1.00 2647 139 0.2270 0.2593 REMARK 3 11 2.8355 - 2.7468 1.00 2609 137 0.2225 0.2279 REMARK 3 12 2.7468 - 2.6683 1.00 2611 138 0.2211 0.2573 REMARK 3 13 2.6683 - 2.5981 1.00 2614 138 0.2208 0.2285 REMARK 3 14 2.5981 - 2.5347 1.00 2623 138 0.2247 0.2637 REMARK 3 15 2.5347 - 2.4770 1.00 2619 138 0.2307 0.2375 REMARK 3 16 2.4770 - 2.4243 1.00 2586 136 0.2277 0.2343 REMARK 3 17 2.4243 - 2.3758 1.00 2600 137 0.2253 0.2431 REMARK 3 18 2.3758 - 2.3310 1.00 2631 139 0.2241 0.2475 REMARK 3 19 2.3310 - 2.2894 1.00 2582 136 0.2275 0.2481 REMARK 3 20 2.2894 - 2.2506 1.00 2589 136 0.2300 0.2622 REMARK 3 21 2.2506 - 2.2143 1.00 2623 138 0.2348 0.2436 REMARK 3 22 2.2143 - 2.1802 1.00 2587 137 0.2403 0.2822 REMARK 3 23 2.1802 - 2.1481 1.00 2601 137 0.2406 0.2391 REMARK 3 24 2.1481 - 2.1179 1.00 2594 136 0.2570 0.2501 REMARK 3 25 2.1179 - 2.0890 0.74 1906 101 0.2953 0.2935 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3841 REMARK 3 ANGLE : 0.682 5228 REMARK 3 CHIRALITY : 0.025 608 REMARK 3 PLANARITY : 0.003 665 REMARK 3 DIHEDRAL : 10.295 1322 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 23.9497 -44.9895 40.6947 REMARK 3 T TENSOR REMARK 3 T11: 0.1546 T22: 0.1460 REMARK 3 T33: 0.3906 T12: -0.0091 REMARK 3 T13: 0.0075 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 0.9499 L22: 0.7643 REMARK 3 L33: 0.3934 L12: 0.0223 REMARK 3 L13: 0.0367 L23: 0.1276 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: 0.0045 S13: -0.0986 REMARK 3 S21: -0.0116 S22: -0.0106 S23: 0.1548 REMARK 3 S31: 0.0593 S32: -0.0671 S33: 0.0009 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2244 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RF2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000087265. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : CONFOCAL MIRRORS VARIMAX HF REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68781 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.089 REMARK 200 RESOLUTION RANGE LOW (A) : 75.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.17100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.79300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.560 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: PDB ENTRY 1NXQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 64 MM AMMONIUM ACETATE, 0.1 M BIS REMARK 280 -TRIS, PH 5.5, 10% PEG10000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 82.06500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 82.06500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 82.06500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 82.06500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 82.06500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 82.06500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 82.06500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 82.06500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -107.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 85.42000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 302 LIES ON A SPECIAL POSITION. REMARK 375 MG MG B 302 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 GLY A -11 REMARK 465 GLY A -10 REMARK 465 LEU A -9 REMARK 465 VAL A -8 REMARK 465 PRO A -7 REMARK 465 ARG A -6 REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 HIS A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 GLY B -11 REMARK 465 GLY B -10 REMARK 465 LEU B -9 REMARK 465 VAL B -8 REMARK 465 PRO B -7 REMARK 465 ARG B -6 REMARK 465 GLY B -5 REMARK 465 SER B -4 REMARK 465 HIS B -3 REMARK 465 GLY B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 ASP A 42 CG OD1 OD2 REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 LYS A 72 CG CD CE NZ REMARK 470 GLU A 105 CG CD OE1 OE2 REMARK 470 SER A 112 OG REMARK 470 GLU A 200 CG CD OE1 OE2 REMARK 470 LYS B 6 CG CD CE NZ REMARK 470 LYS B 46 CG CD CE NZ REMARK 470 LYS B 49 CG CD CE NZ REMARK 470 GLU B 79 CG CD OE1 OE2 REMARK 470 SER B 112 OG REMARK 470 LYS B 192 CE NZ REMARK 470 GLU B 200 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 142 -135.65 -92.38 REMARK 500 LYS A 211 -71.49 -105.33 REMARK 500 SER B 142 -135.56 -92.21 REMARK 500 LYS B 211 -70.19 -105.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 252 O REMARK 620 2 HOH A 405 O 71.2 REMARK 620 3 HOH A 408 O 85.2 77.5 REMARK 620 4 HOH A 419 O 86.9 76.2 153.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RF3 RELATED DB: PDB REMARK 900 RELATED ID: 4RF4 RELATED DB: PDB REMARK 900 RELATED ID: 4RF5 RELATED DB: PDB DBREF 4RF2 A 1 252 UNP Q6WVP7 Q6WVP7_9LACO 1 252 DBREF 4RF2 B 1 252 UNP Q6WVP7 Q6WVP7_9LACO 1 252 SEQADV 4RF2 HIS A -19 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 HIS A -18 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 HIS A -17 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 HIS A -16 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 HIS A -15 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 HIS A -14 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 HIS A -13 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 HIS A -12 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 GLY A -11 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 GLY A -10 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 LEU A -9 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 VAL A -8 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 PRO A -7 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 ARG A -6 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 GLY A -5 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 SER A -4 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 HIS A -3 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 GLY A -2 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 GLY A -1 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 SER A 0 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 HIS B -19 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 HIS B -18 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 HIS B -17 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 HIS B -16 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 HIS B -15 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 HIS B -14 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 HIS B -13 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 HIS B -12 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 GLY B -11 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 GLY B -10 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 LEU B -9 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 VAL B -8 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 PRO B -7 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 ARG B -6 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 GLY B -5 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 SER B -4 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 HIS B -3 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 GLY B -2 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 GLY B -1 UNP Q6WVP7 EXPRESSION TAG SEQADV 4RF2 SER B 0 UNP Q6WVP7 EXPRESSION TAG SEQRES 1 A 272 HIS HIS HIS HIS HIS HIS HIS HIS GLY GLY LEU VAL PRO SEQRES 2 A 272 ARG GLY SER HIS GLY GLY SER MET THR ASP ARG LEU LYS SEQRES 3 A 272 GLY LYS VAL ALA ILE VAL THR GLY GLY THR LEU GLY ILE SEQRES 4 A 272 GLY LEU ALA ILE ALA ASP LYS PHE VAL GLU GLU GLY ALA SEQRES 5 A 272 LYS VAL VAL ILE THR GLY ARG HIS ALA ASP VAL GLY GLU SEQRES 6 A 272 LYS ALA ALA LYS SER ILE GLY GLY THR ASP VAL ILE ARG SEQRES 7 A 272 PHE VAL GLN HIS ASP ALA SER ASP GLU ALA GLY TRP THR SEQRES 8 A 272 LYS LEU PHE ASP THR THR GLU GLU ALA PHE GLY PRO VAL SEQRES 9 A 272 THR THR VAL VAL ASN ASN ALA GLY ILE ALA VAL SER LYS SEQRES 10 A 272 SER VAL GLU ASP THR THR THR GLU GLU TRP ARG LYS LEU SEQRES 11 A 272 LEU SER VAL ASN LEU ASP GLY VAL PHE PHE GLY THR ARG SEQRES 12 A 272 LEU GLY ILE GLN ARG MET LYS ASN LYS GLY LEU GLY ALA SEQRES 13 A 272 SER ILE ILE ASN MET SER SER ILE GLU GLY PHE VAL GLY SEQRES 14 A 272 ASP PRO THR LEU GLY ALA TYR ASN ALA SER LYS GLY ALA SEQRES 15 A 272 VAL ARG ILE MET SER LYS SER ALA ALA LEU ASP CYS ALA SEQRES 16 A 272 LEU LYS ASP TYR ASP VAL ARG VAL ASN THR VAL HIS PRO SEQRES 17 A 272 GLY TYR ILE LYS THR PRO LEU VAL ASP ASP LEU GLU GLY SEQRES 18 A 272 ALA GLU GLU MET MET SER GLN ARG THR LYS THR PRO MET SEQRES 19 A 272 GLY HIS ILE GLY GLU PRO ASN ASP ILE ALA TRP ILE CYS SEQRES 20 A 272 VAL TYR LEU ALA SER ASP GLU SER LYS PHE ALA THR GLY SEQRES 21 A 272 ALA GLU PHE VAL VAL ASP GLY GLY TYR THR ALA GLN SEQRES 1 B 272 HIS HIS HIS HIS HIS HIS HIS HIS GLY GLY LEU VAL PRO SEQRES 2 B 272 ARG GLY SER HIS GLY GLY SER MET THR ASP ARG LEU LYS SEQRES 3 B 272 GLY LYS VAL ALA ILE VAL THR GLY GLY THR LEU GLY ILE SEQRES 4 B 272 GLY LEU ALA ILE ALA ASP LYS PHE VAL GLU GLU GLY ALA SEQRES 5 B 272 LYS VAL VAL ILE THR GLY ARG HIS ALA ASP VAL GLY GLU SEQRES 6 B 272 LYS ALA ALA LYS SER ILE GLY GLY THR ASP VAL ILE ARG SEQRES 7 B 272 PHE VAL GLN HIS ASP ALA SER ASP GLU ALA GLY TRP THR SEQRES 8 B 272 LYS LEU PHE ASP THR THR GLU GLU ALA PHE GLY PRO VAL SEQRES 9 B 272 THR THR VAL VAL ASN ASN ALA GLY ILE ALA VAL SER LYS SEQRES 10 B 272 SER VAL GLU ASP THR THR THR GLU GLU TRP ARG LYS LEU SEQRES 11 B 272 LEU SER VAL ASN LEU ASP GLY VAL PHE PHE GLY THR ARG SEQRES 12 B 272 LEU GLY ILE GLN ARG MET LYS ASN LYS GLY LEU GLY ALA SEQRES 13 B 272 SER ILE ILE ASN MET SER SER ILE GLU GLY PHE VAL GLY SEQRES 14 B 272 ASP PRO THR LEU GLY ALA TYR ASN ALA SER LYS GLY ALA SEQRES 15 B 272 VAL ARG ILE MET SER LYS SER ALA ALA LEU ASP CYS ALA SEQRES 16 B 272 LEU LYS ASP TYR ASP VAL ARG VAL ASN THR VAL HIS PRO SEQRES 17 B 272 GLY TYR ILE LYS THR PRO LEU VAL ASP ASP LEU GLU GLY SEQRES 18 B 272 ALA GLU GLU MET MET SER GLN ARG THR LYS THR PRO MET SEQRES 19 B 272 GLY HIS ILE GLY GLU PRO ASN ASP ILE ALA TRP ILE CYS SEQRES 20 B 272 VAL TYR LEU ALA SER ASP GLU SER LYS PHE ALA THR GLY SEQRES 21 B 272 ALA GLU PHE VAL VAL ASP GLY GLY TYR THR ALA GLN HET NAP A 301 48 HET MG A 302 1 HET MG A 303 1 HET NAP B 301 48 HET MG B 302 1 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM MG MAGNESIUM ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 MG 3(MG 2+) FORMUL 8 HOH *128(H2 O) HELIX 1 1 LEU A 17 GLU A 30 1 14 HELIX 2 2 HIS A 40 GLY A 52 1 13 HELIX 3 3 ASP A 66 GLY A 82 1 17 HELIX 4 4 THR A 103 LEU A 115 1 13 HELIX 5 5 LEU A 115 LYS A 130 1 16 HELIX 6 6 SER A 143 PHE A 147 5 5 HELIX 7 7 LEU A 153 LYS A 177 1 25 HELIX 8 8 THR A 193 LEU A 199 1 7 HELIX 9 9 GLY A 201 SER A 207 1 7 HELIX 10 10 GLU A 219 SER A 232 1 14 HELIX 11 11 ASP A 233 LYS A 236 5 4 HELIX 12 12 GLY A 248 GLN A 252 5 5 HELIX 13 13 LEU B 17 GLU B 30 1 14 HELIX 14 14 HIS B 40 GLY B 52 1 13 HELIX 15 15 ASP B 66 GLY B 82 1 17 HELIX 16 16 THR B 103 LEU B 115 1 13 HELIX 17 17 LEU B 115 LYS B 130 1 16 HELIX 18 18 SER B 143 PHE B 147 5 5 HELIX 19 19 LEU B 153 LYS B 177 1 25 HELIX 20 20 THR B 193 LEU B 199 1 7 HELIX 21 21 GLY B 201 SER B 207 1 7 HELIX 22 22 GLU B 219 SER B 232 1 14 HELIX 23 23 ASP B 233 LYS B 236 5 4 HELIX 24 24 GLY B 248 GLN B 252 5 5 SHEET 1 A 7 ILE A 57 GLN A 61 0 SHEET 2 A 7 LYS A 33 GLY A 38 1 N ILE A 36 O VAL A 60 SHEET 3 A 7 VAL A 9 VAL A 12 1 N ALA A 10 O LYS A 33 SHEET 4 A 7 THR A 86 ASN A 89 1 O VAL A 88 N ILE A 11 SHEET 5 A 7 ALA A 136 MET A 141 1 O ILE A 139 N VAL A 87 SHEET 6 A 7 VAL A 181 PRO A 188 1 O ARG A 182 N ILE A 138 SHEET 7 A 7 GLU A 242 VAL A 245 1 O PHE A 243 N HIS A 187 SHEET 1 B 7 ILE B 57 GLN B 61 0 SHEET 2 B 7 LYS B 33 GLY B 38 1 N ILE B 36 O VAL B 60 SHEET 3 B 7 VAL B 9 VAL B 12 1 N ALA B 10 O LYS B 33 SHEET 4 B 7 THR B 86 ASN B 89 1 O VAL B 88 N ILE B 11 SHEET 5 B 7 ALA B 136 MET B 141 1 O ILE B 139 N VAL B 87 SHEET 6 B 7 VAL B 181 PRO B 188 1 O ARG B 182 N ILE B 138 SHEET 7 B 7 GLU B 242 VAL B 245 1 O PHE B 243 N HIS B 187 LINK O GLN A 252 MG MG A 303 1555 1555 2.27 LINK MG MG A 302 O HOH A 456 1555 1555 2.15 LINK MG MG A 303 O HOH A 405 1555 1555 2.04 LINK MG MG A 303 O HOH A 408 1555 1555 2.10 LINK MG MG A 303 O HOH A 419 1555 1555 2.14 SITE 1 AC1 32 GLY A 14 THR A 16 LEU A 17 GLY A 18 SITE 2 AC1 32 ILE A 19 ARG A 39 HIS A 40 HIS A 62 SITE 3 AC1 32 ASP A 63 ALA A 64 ASN A 90 ALA A 91 SITE 4 AC1 32 GLY A 92 VAL A 113 MET A 141 SER A 142 SITE 5 AC1 32 SER A 143 TYR A 156 LYS A 160 PRO A 188 SITE 6 AC1 32 GLY A 189 TYR A 190 ILE A 191 THR A 193 SITE 7 AC1 32 PRO A 194 LEU A 195 VAL A 196 HOH A 411 SITE 8 AC1 32 HOH A 440 HOH A 451 HOH A 458 HOH A 463 SITE 1 AC2 1 HOH A 456 SITE 1 AC3 5 GLN A 252 HOH A 405 HOH A 408 HOH A 419 SITE 2 AC3 5 GLN B 252 SITE 1 AC4 29 GLY B 14 THR B 16 LEU B 17 GLY B 18 SITE 2 AC4 29 ILE B 19 ARG B 39 HIS B 40 HIS B 62 SITE 3 AC4 29 ASP B 63 ALA B 64 ASN B 90 ALA B 91 SITE 4 AC4 29 GLY B 92 VAL B 113 MET B 141 SER B 142 SITE 5 AC4 29 SER B 143 TYR B 156 LYS B 160 PRO B 188 SITE 6 AC4 29 GLY B 189 TYR B 190 ILE B 191 THR B 193 SITE 7 AC4 29 PRO B 194 LEU B 195 VAL B 196 HOH B 411 SITE 8 AC4 29 HOH B 436 CRYST1 164.130 164.130 85.420 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006093 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006093 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011707 0.00000