HEADER TRANSCRIPTION REGULATOR 25-SEP-14 4RFA TITLE CRYSTAL STRUCTURE OF CYCLIC NUCLEOTIDE-BINDING DOMAIN CONTAINING TITLE 2 PROTEIN FROM LISTERIA MONOCYTOGENES EGD-E COMPND MOL_ID: 1; COMPND 2 MOLECULE: LMO0740 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 169963; SOURCE 4 STRAIN: EGD-E; SOURCE 5 GENE: LMO0740; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG87 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, MCSG, CRP, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR E.V.FILIPPOVA,G.MINASOV,O.KIRYUKHINA,R.JEDRZEJCZAK,A.JOACHIMIAK, AUTHOR 2 W.F.ANDERSON,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 2 22-NOV-17 4RFA 1 REMARK REVDAT 1 15-OCT-14 4RFA 0 JRNL AUTH E.V.FILIPPOVA,G.MINASOV,O.KIRYUKHINA,R.JEDRZEJCZAK, JRNL AUTH 2 A.JOACHIMIAK,W.F.ANDERSON JRNL TITL CRYSTAL STRUCTURE OF CYCLIC NUCLEOTIDE-BINDING DOMAIN JRNL TITL 2 CONTAINING PROTEIN FROM LISTERIA MONOCYTOGENES EGD-E JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 17762 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 920 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.21 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.27 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1245 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1736 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 45 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.73000 REMARK 3 B22 (A**2) : 0.73000 REMARK 3 B33 (A**2) : -2.35000 REMARK 3 B12 (A**2) : 0.36000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.191 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.174 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.132 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.823 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1790 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1728 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2425 ; 1.722 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3989 ; 0.832 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 216 ; 6.733 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 82 ;37.389 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 313 ;16.973 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;22.645 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 280 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1978 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 385 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 864 ; 3.220 ; 4.438 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 863 ; 3.221 ; 4.434 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1080 ; 4.704 ; 6.628 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1081 ; 4.702 ; 6.634 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 924 ; 3.968 ; 4.978 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 922 ; 3.968 ; 4.969 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1345 ; 6.041 ; 7.289 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2050 ; 8.980 ;36.715 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2044 ; 8.971 ;36.649 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 37 REMARK 3 ORIGIN FOR THE GROUP (A): 19.4707 35.3752 -4.0310 REMARK 3 T TENSOR REMARK 3 T11: 0.1722 T22: 0.3093 REMARK 3 T33: 0.0463 T12: 0.0648 REMARK 3 T13: -0.0765 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 6.4581 L22: 2.8568 REMARK 3 L33: 1.4795 L12: -2.7555 REMARK 3 L13: 0.4537 L23: -1.6764 REMARK 3 S TENSOR REMARK 3 S11: 0.0813 S12: -0.2671 S13: 0.0869 REMARK 3 S21: -0.4101 S22: 0.0404 S23: 0.0951 REMARK 3 S31: 0.2914 S32: -0.1601 S33: -0.1217 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 71 REMARK 3 ORIGIN FOR THE GROUP (A): 35.6169 31.6781 -1.4753 REMARK 3 T TENSOR REMARK 3 T11: 0.1685 T22: 0.0609 REMARK 3 T33: 0.0358 T12: 0.0526 REMARK 3 T13: 0.0374 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 6.1047 L22: 2.3639 REMARK 3 L33: 1.7167 L12: -0.1159 REMARK 3 L13: 2.1617 L23: -0.8583 REMARK 3 S TENSOR REMARK 3 S11: 0.0052 S12: 0.1030 S13: 0.3594 REMARK 3 S21: -0.4591 S22: -0.0964 S23: -0.0872 REMARK 3 S31: -0.0349 S32: -0.0746 S33: 0.0912 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 72 A 116 REMARK 3 ORIGIN FOR THE GROUP (A): 25.3782 36.9170 1.5297 REMARK 3 T TENSOR REMARK 3 T11: 0.2888 T22: 0.3803 REMARK 3 T33: 0.2098 T12: 0.1623 REMARK 3 T13: -0.0581 T23: -0.0732 REMARK 3 L TENSOR REMARK 3 L11: 1.6206 L22: 2.7523 REMARK 3 L33: 3.9602 L12: -1.1117 REMARK 3 L13: 1.3418 L23: -2.5827 REMARK 3 S TENSOR REMARK 3 S11: 0.0847 S12: -0.2825 S13: 0.3048 REMARK 3 S21: -0.4119 S22: -0.1380 S23: 0.0538 REMARK 3 S31: -0.1812 S32: -0.4029 S33: 0.0533 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 117 A 140 REMARK 3 ORIGIN FOR THE GROUP (A): 30.1024 30.0477 12.4413 REMARK 3 T TENSOR REMARK 3 T11: 0.1268 T22: 0.1465 REMARK 3 T33: 0.0956 T12: -0.0072 REMARK 3 T13: -0.0278 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 11.3825 L22: 2.4599 REMARK 3 L33: 1.1042 L12: -3.6248 REMARK 3 L13: 1.3662 L23: 0.3892 REMARK 3 S TENSOR REMARK 3 S11: -0.2277 S12: -0.0118 S13: 0.2060 REMARK 3 S21: 0.1287 S22: 0.0598 S23: 0.0830 REMARK 3 S31: 0.0134 S32: -0.1669 S33: 0.1679 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 141 A 218 REMARK 3 ORIGIN FOR THE GROUP (A): 39.1860 11.6176 4.4268 REMARK 3 T TENSOR REMARK 3 T11: 0.1975 T22: 0.0310 REMARK 3 T33: 0.1281 T12: -0.0116 REMARK 3 T13: -0.0806 T23: 0.0325 REMARK 3 L TENSOR REMARK 3 L11: 2.1873 L22: 5.5130 REMARK 3 L33: 3.6765 L12: -1.0283 REMARK 3 L13: 0.5726 L23: -0.9528 REMARK 3 S TENSOR REMARK 3 S11: 0.0364 S12: -0.1855 S13: -0.4442 REMARK 3 S21: -0.4220 S22: 0.2206 S23: 0.3531 REMARK 3 S31: 0.4410 S32: -0.1946 S33: -0.2570 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RFA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000087273. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18733 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.210 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 21.30 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.80 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M TRI-SODIUM CITRATE, 0.1 M SODIUM REMARK 280 CACODYLATE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.05267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.02633 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 72.03950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 24.01317 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 120.06583 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 96.05267 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 48.02633 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 24.01317 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 72.03950 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 120.06583 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 45.99350 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 79.66308 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 24.01317 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 319 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 PRO A 2 REMARK 465 LYS A 85 REMARK 465 LYS A 86 REMARK 465 ILE A 219 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 95 CD OE1 OE2 REMARK 470 LEU A 108 CG CD1 CD2 REMARK 470 LYS A 114 CE NZ REMARK 470 ARG A 165 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 158 N - CA - CB ANGL. DEV. = -16.0 DEGREES REMARK 500 ARG A 184 CG - CD - NE ANGL. DEV. = 12.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 30 -8.44 68.34 REMARK 500 TYR A 72 1.95 81.16 REMARK 500 VAL A 117 86.38 -68.54 REMARK 500 ASN A 118 -22.46 64.73 REMARK 500 GLU A 163 -59.65 69.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 116 VAL A 117 -147.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC106831 RELATED DB: TARGETTRACK DBREF 4RFA A 1 219 UNP Q8Y902 Q8Y902_LISMO 1 219 SEQADV 4RFA MSE A -6 UNP Q8Y902 EXPRESSION TAG SEQADV 4RFA HIS A -5 UNP Q8Y902 EXPRESSION TAG SEQADV 4RFA HIS A -4 UNP Q8Y902 EXPRESSION TAG SEQADV 4RFA HIS A -3 UNP Q8Y902 EXPRESSION TAG SEQADV 4RFA HIS A -2 UNP Q8Y902 EXPRESSION TAG SEQADV 4RFA HIS A -1 UNP Q8Y902 EXPRESSION TAG SEQADV 4RFA HIS A 0 UNP Q8Y902 EXPRESSION TAG SEQRES 1 A 226 MSE HIS HIS HIS HIS HIS HIS MSE PRO GLU LYS LEU ASP SEQRES 2 A 226 THR VAL LEU GLY TYR LEU LYS GLU PHE PRO ASP TYR TYR SEQRES 3 A 226 LYS TYR VAL THR LYS LYS THR TYR THR LEU ASN GLU LYS SEQRES 4 A 226 ILE ILE PHE GLU ASP GLU LYS ALA LYS SER ILE PHE PHE SEQRES 5 A 226 ILE VAL GLU GLY TYR ALA ALA VAL GLU LEU GLU ASP ASN SEQRES 6 A 226 LEU ARG LYS THR ASN TYR ILE SER ILE PHE VAL LEU PRO SEQRES 7 A 226 TYR ASN VAL LEU GLY ILE ASP ALA PHE SER SER TYR PRO SEQRES 8 A 226 LYS LYS LYS HIS SER ILE THR VAL MSE SER GLU SER LEU SEQRES 9 A 226 MSE LEU TYR LYS ILE ASP ALA ASP PHE LEU LEU ASN ILE SEQRES 10 A 226 LEU SER ILE LYS PRO ASP VAL ASN ASP PHE LEU LEU THR SEQRES 11 A 226 SER ILE ALA ASP VAL PHE ALA ARG HIS TYR ALA LEU LEU SEQRES 12 A 226 GLY MSE ILE ALA LYS THR PRO LYS GLU ARG ILE TYR MSE SEQRES 13 A 226 ALA LEU GLU ASN LEU ALA VAL GLU MSE GLY THR GLU ASP SEQRES 14 A 226 GLU GLU ARG ASN GLU ILE VAL LEU PRO ASN PHE ILE ASN SEQRES 15 A 226 GLN SER VAL LEU ALA ARG TYR CYS ARG THR THR GLN PRO SEQRES 16 A 226 ASN ILE SER ASN LEU LEU THR GLU LEU VAL GLU GLU GLU SEQRES 17 A 226 PHE LEU ILE ASN LYS LYS SER PRO TYR ARG ILE ASP LYS SEQRES 18 A 226 ASP SER LEU ASP ILE MODRES 4RFA MSE A 93 MET SELENOMETHIONINE MODRES 4RFA MSE A 98 MET SELENOMETHIONINE MODRES 4RFA MSE A 138 MET SELENOMETHIONINE MODRES 4RFA MSE A 149 MET SELENOMETHIONINE MODRES 4RFA MSE A 158 MET SELENOMETHIONINE HET MSE A 93 16 HET MSE A 98 8 HET MSE A 138 8 HET MSE A 149 8 HET MSE A 158 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 HOH *45(H2 O) HELIX 1 1 GLU A 3 GLU A 14 1 12 HELIX 2 2 ASP A 17 TYR A 21 1 5 HELIX 3 3 GLY A 76 SER A 81 5 6 HELIX 4 4 ALA A 104 LYS A 114 1 11 HELIX 5 5 ASN A 118 GLY A 137 1 20 HELIX 6 6 THR A 142 GLY A 159 1 18 HELIX 7 7 ASN A 175 CYS A 183 1 9 HELIX 8 8 THR A 186 GLU A 200 1 15 SHEET 1 A 4 VAL A 22 THR A 28 0 SHEET 2 A 4 SER A 96 ASP A 103 -1 O LYS A 101 N THR A 23 SHEET 3 A 4 SER A 42 GLU A 48 -1 N ILE A 43 O ILE A 102 SHEET 4 A 4 VAL A 74 LEU A 75 -1 O LEU A 75 N PHE A 44 SHEET 1 B 3 ILE A 65 VAL A 69 0 SHEET 2 B 3 ALA A 51 LEU A 55 -1 N VAL A 53 O SER A 66 SHEET 3 B 3 HIS A 88 VAL A 92 -1 O SER A 89 N GLU A 54 SHEET 1 C 3 THR A 160 GLU A 161 0 SHEET 2 C 3 GLU A 167 VAL A 169 -1 O VAL A 169 N THR A 160 SHEET 3 C 3 ARG A 211 ASP A 213 -1 O ILE A 212 N ILE A 168 LINK C VAL A 92 N AMSE A 93 1555 1555 1.33 LINK C VAL A 92 N BMSE A 93 1555 1555 1.33 LINK C AMSE A 93 N SER A 94 1555 1555 1.33 LINK C BMSE A 93 N SER A 94 1555 1555 1.34 LINK C LEU A 97 N MSE A 98 1555 1555 1.33 LINK C MSE A 98 N LEU A 99 1555 1555 1.32 LINK C GLY A 137 N MSE A 138 1555 1555 1.33 LINK C MSE A 138 N ILE A 139 1555 1555 1.33 LINK C TYR A 148 N MSE A 149 1555 1555 1.34 LINK C MSE A 149 N ALA A 150 1555 1555 1.34 LINK C GLU A 157 N MSE A 158 1555 1555 1.31 LINK C MSE A 158 N GLY A 159 1555 1555 1.31 CISPEP 1 SER A 208 PRO A 209 0 3.25 CRYST1 91.987 91.987 144.079 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010871 0.006276 0.000000 0.00000 SCALE2 0.000000 0.012553 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006941 0.00000