HEADER VIRAL PROTEIN/IMMUNE SYSTEM/INHIBITOR 26-SEP-14 4RFO TITLE CRYSTAL STRUCTURE OF THE ADCC-POTENT ANTIBODY N60-I3 FAB IN COMPLEX TITLE 2 WITH HIV-1 CLADE A/E GP120 AND M48U1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 CLADE A/E GP120; COMPND 3 CHAIN: G; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: M48U1 CD4 MIMETIC PEPTIDE; COMPND 8 CHAIN: N; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: N60-I3 FAB HEAVY CHAIN; COMPND 12 CHAIN: H; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: N60-I3 FAB LIGHT CHAIN; COMPND 16 CHAIN: L; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_COMMON: HIV-1; SOURCE 4 ORGANISM_TAXID: 11676; SOURCE 5 GENE: HIV-1 ENV; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK 293 GNT1-; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 OTHER_DETAILS: M48U1 IS AN ENGINEERED CD4 MIMETIC; SOURCE 16 MOL_ID: 3; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606; SOURCE 20 GENE: FAB HEAVY CHAIN OF ADCC-POTENT ANTI-HIV-1 ANTIBODY N60-I3; SOURCE 21 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 22 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 24 EXPRESSION_SYSTEM_CELL_LINE: HEK 293; SOURCE 25 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 26 MOL_ID: 4; SOURCE 27 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 28 ORGANISM_COMMON: HUMAN; SOURCE 29 ORGANISM_TAXID: 9606; SOURCE 30 GENE: FAB LIGHT CHAIN OF ADCC-POTENT ANTI-HIV-1 ANTIBODY N60-I3; SOURCE 31 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 32 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 33 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 34 EXPRESSION_SYSTEM_CELL_LINE: HEK 293 KEYWDS HIV-1 GP120, CLADE A/E 93TH057, VIRAL PROTEIN, VIRAL PROTEIN-IMMUNE KEYWDS 2 SYSTEM-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.D.TOLBERT,N.GOHAIN,M.PAZGIER REVDAT 6 06-DEC-23 4RFO 1 REMARK REVDAT 5 20-SEP-23 4RFO 1 REMARK REVDAT 4 02-JUN-21 4RFO 1 SOURCE HETSYN REVDAT 3 29-JUL-20 4RFO 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 19-AUG-15 4RFO 1 JRNL REVDAT 1 15-JUL-15 4RFO 0 JRNL AUTH N.GOHAIN,W.D.TOLBERT,P.ACHARYA,L.YU,T.LIU,P.ZHAO,C.ORLANDI, JRNL AUTH 2 M.L.VISCIANO,R.KAMIN-LEWIS,M.M.SAJADI,L.MARTIN,J.E.ROBINSON, JRNL AUTH 3 P.D.KWONG,A.L.DEVICO,K.RAY,G.K.LEWIS,M.PAZGIER JRNL TITL COCRYSTAL STRUCTURES OF ANTIBODY N60-I3 AND ANTIBODY JR4 IN JRNL TITL 2 COMPLEX WITH GP120 DEFINE MORE CLUSTER A EPITOPES INVOLVED JRNL TITL 3 IN EFFECTIVE ANTIBODY-DEPENDENT EFFECTOR FUNCTION AGAINST JRNL TITL 4 HIV-1. JRNL REF J.VIROL. V. 89 8840 2015 JRNL REFN ISSN 0022-538X JRNL PMID 26085162 JRNL DOI 10.1128/JVI.01232-15 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073/PHENIX 1.9 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 16589 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 876 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1214 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.3500 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6042 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 126 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 116.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.98000 REMARK 3 B22 (A**2) : -8.03000 REMARK 3 B33 (A**2) : 7.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.562 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.543 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 73.662 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.892 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6328 ; 0.007 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 5859 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8547 ; 1.411 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13494 ; 0.836 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 762 ; 7.834 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 245 ;37.936 ;25.143 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1005 ;20.340 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;21.557 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 994 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6899 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1361 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3147 ; 1.813 ; 6.394 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3146 ; 1.813 ; 6.394 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3863 ; 3.101 ; 9.601 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3912 ; 3.072 ; 9.515 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3181 ; 2.226 ; 6.624 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3190 ; 1.971 ; 6.576 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4716 ; 3.304 ; 9.819 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 25361 ; 7.916 ;60.476 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 25362 ; 7.916 ;60.479 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 44 G 492 REMARK 3 ORIGIN FOR THE GROUP (A): 12.7138 113.3152 112.9531 REMARK 3 T TENSOR REMARK 3 T11: 0.2384 T22: 0.2360 REMARK 3 T33: 0.1561 T12: -0.0413 REMARK 3 T13: 0.1191 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 3.3147 L22: 4.6468 REMARK 3 L33: 4.8951 L12: 0.3302 REMARK 3 L13: 0.1406 L23: 1.5985 REMARK 3 S TENSOR REMARK 3 S11: 0.1678 S12: -0.3699 S13: 0.4481 REMARK 3 S21: 0.6416 S22: -0.2961 S23: 0.4217 REMARK 3 S31: -0.3286 S32: -0.4149 S33: 0.1282 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : N 2 N 27 REMARK 3 ORIGIN FOR THE GROUP (A): 26.1465 130.5376 116.8838 REMARK 3 T TENSOR REMARK 3 T11: 0.4404 T22: 0.2130 REMARK 3 T33: 0.4536 T12: -0.0676 REMARK 3 T13: 0.0127 T23: -0.1099 REMARK 3 L TENSOR REMARK 3 L11: 5.4559 L22: 7.8753 REMARK 3 L33: 3.3289 L12: 6.4612 REMARK 3 L13: 4.1598 L23: 4.7413 REMARK 3 S TENSOR REMARK 3 S11: 0.2419 S12: -0.1980 S13: -0.5120 REMARK 3 S21: 0.3036 S22: -0.1058 S23: -0.8981 REMARK 3 S31: 0.1650 S32: -0.2308 S33: -0.1361 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 212 REMARK 3 ORIGIN FOR THE GROUP (A): 22.7672 89.7352 66.1348 REMARK 3 T TENSOR REMARK 3 T11: 0.3993 T22: 0.7158 REMARK 3 T33: 0.2877 T12: 0.0084 REMARK 3 T13: -0.0310 T23: -0.3234 REMARK 3 L TENSOR REMARK 3 L11: 1.8028 L22: 2.6411 REMARK 3 L33: 5.2389 L12: -1.0647 REMARK 3 L13: -2.5041 L23: 2.6298 REMARK 3 S TENSOR REMARK 3 S11: -0.3156 S12: 0.5931 S13: -0.5191 REMARK 3 S21: -0.2846 S22: 0.0228 S23: 0.1163 REMARK 3 S31: 0.6361 S32: -0.0004 S33: 0.2929 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 208 REMARK 3 ORIGIN FOR THE GROUP (A): 32.6221 103.0737 58.8227 REMARK 3 T TENSOR REMARK 3 T11: 0.8009 T22: 1.1627 REMARK 3 T33: 0.2295 T12: -0.0133 REMARK 3 T13: 0.0983 T23: -0.0640 REMARK 3 L TENSOR REMARK 3 L11: 0.9053 L22: 2.8390 REMARK 3 L33: 5.3537 L12: -0.9410 REMARK 3 L13: -1.6973 L23: 2.8265 REMARK 3 S TENSOR REMARK 3 S11: 0.3465 S12: 0.5291 S13: 0.0039 REMARK 3 S21: -1.2192 S22: -0.0888 S23: -0.5278 REMARK 3 S31: -1.0668 S32: 0.3390 S33: -0.2577 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RFO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087287. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12709 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : RH COATED FLAT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17516 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.89900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3TNN FOR N60-I3, PDB ENTRY 4H8W FOR REMARK 200 GP120, PDB ENTRY 4JZW FOR M48U1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-16% PEG 8000, 0.1 M TRIS-HCL PH REMARK 280 8.5, 65 MM NACL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 49.15250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.28750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.15250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.28750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, N, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE CD4-MIMETIC MINIPROTEINS INHIBIT HIV-1 ENTRY AND ARE DERIVED REMARK 400 FROM SCYLLATOXIN (A SCORPION TOXIN) BY TRANSPLANTING THE GP120- REMARK 400 INTERACTIVE REGION OF CD4 ONTO THE SCYLLATOXIN SCAFFOLD, FOLLOWED REMARK 400 BY MANY ROUNDS OF ITERATIVE OPTIMIZATION REMARK 400 REMARK 400 THE CD4-MIMETIC MINIPROTEIN M48U1 IS PEPTIDE-LIKE, A MEMBER OF REMARK 400 INHIBITOR CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: CD4-MIMETIC MINIPROTEIN M48U1 REMARK 400 CHAIN: N REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY G 197 REMARK 465 GLY G 198 REMARK 465 SER G 199 REMARK 465 VAL G 200 REMARK 465 ILE G 201 REMARK 465 GLY G 318 REMARK 465 GLY G 319 REMARK 465 SER G 320 REMARK 465 GLY G 321 REMARK 465 SER G 322 REMARK 465 GLY G 323 REMARK 465 GLY G 324 REMARK 465 GLY G 403 REMARK 465 ASN G 404 REMARK 465 GLU G 405 REMARK 465 THR G 406 REMARK 465 MET G 407 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLY H 133 REMARK 465 GLY H 134 REMARK 465 THR H 135 REMARK 465 PRO H 213 REMARK 465 LYS H 214 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 THR H 219 REMARK 465 HIS H 220 REMARK 465 THR L -4 REMARK 465 GLY L -3 REMARK 465 VAL L -2 REMARK 465 LEU L -1 REMARK 465 SER L 0 REMARK 465 THR L 209 REMARK 465 GLU L 210 REMARK 465 CYS L 211 REMARK 465 SER L 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG ASN G 262 C1 NAG G 503 1.69 REMARK 500 OD1 ASN G 262 C1 NAG G 503 1.75 REMARK 500 ND2 ASN G 241 O5 NAG G 502 1.95 REMARK 500 NE2 GLN H 171 OG SER H 177 1.96 REMARK 500 O ASP H 72 N GLN H 75 2.00 REMARK 500 O VAL G 345 N GLU G 347 2.06 REMARK 500 OD1 ASN G 262 O5 NAG G 503 2.06 REMARK 500 OE2 GLU G 83 OG SER G 243 2.07 REMARK 500 O GLN H 3 O VAL H 24 2.08 REMARK 500 CG ASN G 241 C1 NAG G 502 2.09 REMARK 500 O TRP G 69 O HIS G 72 2.11 REMARK 500 O ALA G 329 O PRO G 417 2.11 REMARK 500 O PRO L 7 OG1 THR L 102 2.12 REMARK 500 O THR G 346 N LYS G 350 2.16 REMARK 500 ND2 ASN G 386 O5 NAG G 508 2.18 REMARK 500 O ASP H 72 C GLN H 75 2.19 REMARK 500 O ASP H 72 CA GLN H 75 2.19 REMARK 500 O SER G 110 NE2 GLN G 114 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN G 355 C LYS G 357 N 0.166 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MPT N 1 CA - C - N ANGL. DEV. = 21.0 DEGREES REMARK 500 MPT N 1 O - C - N ANGL. DEV. = -13.6 DEGREES REMARK 500 THR N 22 CA - C - N ANGL. DEV. = 15.7 DEGREES REMARK 500 THR N 22 O - C - N ANGL. DEV. = -19.5 DEGREES REMARK 500 U2X N 23 C - N - CA ANGL. DEV. = 27.8 DEGREES REMARK 500 U2X N 23 O - C - N ANGL. DEV. = -25.2 DEGREES REMARK 500 GLY H 100A C - N - CA ANGL. DEV. = 16.7 DEGREES REMARK 500 TYR H 100C O - C - N ANGL. DEV. = -12.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA G 73 -49.73 87.07 REMARK 500 GLU G 87 -111.23 12.68 REMARK 500 ASN G 94 85.28 -162.17 REMARK 500 LYS G 97 67.59 -155.07 REMARK 500 TRP G 112 -79.71 -71.28 REMARK 500 ASP G 113 76.73 -63.43 REMARK 500 GLN G 114 -53.60 165.13 REMARK 500 VAL G 120 140.77 64.03 REMARK 500 LYS G 121 -152.70 -62.19 REMARK 500 ALA G 204 105.72 67.38 REMARK 500 PRO G 220 -156.74 -86.92 REMARK 500 LYS G 231 -61.14 55.49 REMARK 500 LYS G 240 -61.67 77.95 REMARK 500 CYS G 247 123.49 -172.70 REMARK 500 GLN G 258 -51.57 66.12 REMARK 500 ASN G 262 117.99 -34.89 REMARK 500 SER G 264 -177.19 -57.54 REMARK 500 LEU G 265 125.98 -170.60 REMARK 500 GLU G 268 -128.25 -103.21 REMARK 500 GLU G 269 -178.21 -56.05 REMARK 500 ASN G 276 104.46 -170.85 REMARK 500 ASN G 280 -27.08 -35.99 REMARK 500 ARG G 327 -14.25 -48.47 REMARK 500 VAL G 345 -138.34 -67.70 REMARK 500 THR G 346 -69.64 41.68 REMARK 500 ASN G 355 27.56 42.77 REMARK 500 THR G 358 140.62 -37.27 REMARK 500 HIS G 374 101.86 -53.55 REMARK 500 PHE G 391 56.89 -100.38 REMARK 500 ASN G 393 -47.78 -20.03 REMARK 500 CYS G 395 97.54 -55.70 REMARK 500 CYS G 410 -150.02 -176.87 REMARK 500 PRO G 417 -78.19 -70.65 REMARK 500 CYS G 418 131.19 75.08 REMARK 500 PRO G 438 -161.23 -48.72 REMARK 500 ASP G 440 -16.09 -36.67 REMARK 500 ASN G 461 -53.25 128.91 REMARK 500 THR G 463 -73.98 62.24 REMARK 500 SER G 464 45.69 152.28 REMARK 500 PRO G 470 147.06 -33.30 REMARK 500 ILE G 491 -56.87 -125.31 REMARK 500 ALA N 20 73.88 -117.63 REMARK 500 VAL H 2 84.51 56.58 REMARK 500 SER H 15 -6.37 65.36 REMARK 500 VAL H 24 -127.79 24.92 REMARK 500 SER H 25 42.52 90.22 REMARK 500 ALA H 27 81.23 113.91 REMARK 500 SER H 28 83.78 -51.03 REMARK 500 ILE H 29 -105.56 -162.95 REMARK 500 SER H 30 -81.70 142.42 REMARK 500 REMARK 500 THIS ENTRY HAS 107 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR G 217 CYS G 218 -145.30 REMARK 500 THR H 23 VAL H 24 144.37 REMARK 500 ILE H 29 SER H 30 33.24 REMARK 500 GLN H 75 ASN H 76 -145.44 REMARK 500 ASN H 100B TYR H 100C -141.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR N 22 14.65 REMARK 500 U2X N 23 -35.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4H8W RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ADCC POTENT ANTIBODY N5-I5 FAB, HIV-1 REMARK 900 GP120, AND SOLUBLE TWO DOMAIN CD4 REMARK 900 RELATED ID: 4RFN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ADCC POTENT RHESUS MACAQUE ANTIBODY JR4, REMARK 900 HIV-1 GP120, AND THE M48 CD4 MIMETIC REMARK 900 RELATED ID: 4JZW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE YU2 GP120 AND THE M48U1 CD4 MIMETIC REMARK 900 RELATED ID: 4RFE RELATED DB: PDB DBREF 4RFO G 44 492 PDB 4RFO 4RFO 44 492 DBREF 4RFO N 1 28 PDB 4RFO 4RFO 1 28 DBREF 4RFO H 1 220 PDB 4RFO 4RFO 1 220 DBREF 4RFO L -4 212 PDB 4RFO 4RFO -4 212 SEQRES 1 G 353 VAL TRP LYS ASP ALA ASP THR THR LEU PHE CYS ALA SER SEQRES 2 G 353 ASP ALA LYS ALA HIS GLU THR GLU VAL HIS ASN VAL TRP SEQRES 3 G 353 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 G 353 GLU ILE HIS LEU GLU ASN VAL THR GLU ASN PHE ASN MET SEQRES 5 G 353 TRP LYS ASN ASN MET VAL GLU GLN MET GLN GLU ASP VAL SEQRES 6 G 353 ILE SER LEU TRP ASP GLN SER LEU GLN PRO CYS VAL LYS SEQRES 7 G 353 LEU THR GLY GLY SER VAL ILE LYS GLN ALA CYS PRO LYS SEQRES 8 G 353 ILE SER PHE ASP PRO ILE PRO ILE HIS TYR CYS THR PRO SEQRES 9 G 353 ALA GLY TYR VAL ILE LEU LYS CYS ASN ASP LYS ASN PHE SEQRES 10 G 353 ASN GLY THR GLY PRO CYS LYS ASN VAL SER SER VAL GLN SEQRES 11 G 353 CYS THR HIS GLY ILE LYS PRO VAL VAL SER THR GLN LEU SEQRES 12 G 353 LEU LEU ASN GLY SER LEU ALA GLU GLU GLU ILE ILE ILE SEQRES 13 G 353 ARG SER GLU ASN LEU THR ASN ASN ALA LYS THR ILE ILE SEQRES 14 G 353 VAL HIS LEU ASN LYS SER VAL GLU ILE ASN CYS THR ARG SEQRES 15 G 353 PRO SER ASN GLY GLY SER GLY SER GLY GLY ASP ILE ARG SEQRES 16 G 353 LYS ALA TYR CYS GLU ILE ASN GLY THR LYS TRP ASN LYS SEQRES 17 G 353 VAL LEU LYS GLN VAL THR GLU LYS LEU LYS GLU HIS PHE SEQRES 18 G 353 ASN ASN LYS THR ILE ILE PHE GLN PRO PRO SER GLY GLY SEQRES 19 G 353 ASP LEU GLU ILE THR MET HIS SER PHE ASN CYS ARG GLY SEQRES 20 G 353 GLU PHE PHE TYR CYS ASN THR THR GLN LEU PHE ASN ASN SEQRES 21 G 353 THR CYS ILE GLY ASN GLU THR MET LYS GLY CYS ASN GLY SEQRES 22 G 353 THR ILE THR LEU PRO CYS LYS ILE LYS GLN ILE ILE ASN SEQRES 23 G 353 MET TRP GLN GLY THR GLY GLN ALA MET TYR ALA PRO PRO SEQRES 24 G 353 ILE ASP GLY LYS ILE ASN CYS VAL SER ASN ILE THR GLY SEQRES 25 G 353 ILE LEU LEU THR ARG ASP GLY GLY ALA ASN ASN THR SER SEQRES 26 G 353 ASN GLU THR PHE ARG PRO GLY GLY GLY ASN ILE LYS ASP SEQRES 27 G 353 ASN TRP ARG SER GLU LEU TYR LYS TYR LYS VAL VAL GLN SEQRES 28 G 353 ILE GLU SEQRES 1 N 28 MPT ASN LEU HIS PHE CYS GLN LEU ARG CYS LYS SER LEU SEQRES 2 N 28 GLY LEU LEU GLY ARG CYS ALA DPR THR U2X CYS ALA CYS SEQRES 3 N 28 VAL NH2 SEQRES 1 H 229 GLU VAL GLN LEU VAL GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 229 PRO SER GLN THR LEU SER LEU THR CYS THR VAL SER GLY SEQRES 3 H 229 ALA SER ILE SER SER GLY GLY TYR PHE TRP SER TRP ILE SEQRES 4 H 229 ARG GLN HIS PRO GLY LYS GLY LEU GLU TRP ILE GLY ASN SEQRES 5 H 229 ILE TYR TYR ILE GLY ASN THR TYR TYR ASN PRO SER LEU SEQRES 6 H 229 LYS SER ARG LEU THR ILE SER VAL ASP THR THR GLN ASN SEQRES 7 H 229 GLN PHE SER LEU LYS LEU THR SER VAL THR ALA ALA ASP SEQRES 8 H 229 THR ALA VAL TYR TYR CYS ALA ARG VAL PRO ARG LEU ARG SEQRES 9 H 229 GLY GLY ASN TYR PHE ASP SER TRP GLY GLN GLY THR LEU SEQRES 10 H 229 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 H 229 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 12 H 229 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 H 229 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 14 H 229 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 H 229 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 16 H 229 SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN SEQRES 17 H 229 HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU SEQRES 18 H 229 PRO LYS SER CYS ASP LYS THR HIS SEQRES 1 L 221 THR GLY VAL LEU SER GLN SER VAL LEU THR GLN PRO ALA SEQRES 2 L 221 SER VAL SER GLY SER PRO GLY GLN SER ILE THR ILE SER SEQRES 3 L 221 CYS THR GLY THR SER SER ASP VAL GLY GLY TYR LYS TYR SEQRES 4 L 221 VAL SER TRP TYR GLN GLN HIS PRO ASP LYS ALA PRO LYS SEQRES 5 L 221 LEU MET ILE TYR GLU VAL SER ASN ARG PRO SER GLY VAL SEQRES 6 L 221 SER ASN ARG PHE SER GLY SER LYS SER GLY ASN THR ALA SEQRES 7 L 221 SER LEU THR ILE SER GLY LEU GLN ALA GLU ASP GLU ALA SEQRES 8 L 221 ASP TYR TYR CYS SER SER TYR THR SER SER SER THR TRP SEQRES 9 L 221 VAL PHE GLY GLY GLY THR LYS LEU THR VAL LEU GLY GLN SEQRES 10 L 221 PRO LYS ALA ALA PRO SER VAL THR LEU PHE PRO PRO SER SEQRES 11 L 221 SER GLU GLU LEU GLN ALA ASN LYS ALA THR LEU VAL CYS SEQRES 12 L 221 LEU ILE SER ASP PHE TYR PRO GLY ALA VAL THR VAL ALA SEQRES 13 L 221 TRP LYS ALA ASP SER SER PRO VAL LYS ALA GLY VAL GLU SEQRES 14 L 221 THR THR THR PRO SER LYS GLN SER ASN ASN LYS TYR ALA SEQRES 15 L 221 ALA SER SER TYR LEU SER LEU THR PRO GLU GLN TRP LYS SEQRES 16 L 221 SER HIS ARG SER TYR SER CYS GLN VAL THR HIS GLU GLY SEQRES 17 L 221 SER THR VAL GLU LYS THR VAL ALA PRO THR GLU CYS SER MODRES 4RFO ASN G 241 ASN GLYCOSYLATION SITE MODRES 4RFO ASN G 295 ASN GLYCOSYLATION SITE MODRES 4RFO ASN G 234 ASN GLYCOSYLATION SITE MODRES 4RFO ASN G 289 ASN GLYCOSYLATION SITE MODRES 4RFO ASN G 334 ASN GLYCOSYLATION SITE MODRES 4RFO ASN G 386 ASN GLYCOSYLATION SITE MODRES 4RFO ASN G 276 ASN GLYCOSYLATION SITE MODRES 4RFO ASN G 392 ASN GLYCOSYLATION SITE MODRES 4RFO ASN G 262 ASN GLYCOSYLATION SITE MODRES 4RFO U2X N 23 TYR O-(CYCLOHEXYLMETHYL)-L-TYROSINE HET MPT N 1 5 HET DPR N 21 7 HET U2X N 23 19 HET NH2 N 28 1 HET NAG G 501 14 HET NAG G 502 14 HET NAG G 503 14 HET NAG G 504 14 HET NAG G 505 14 HET NAG G 506 14 HET NAG G 507 14 HET NAG G 508 14 HET NAG G 509 14 HETNAM MPT BETA-MERCAPTOPROPIONIC ACID HETNAM DPR D-PROLINE HETNAM U2X O-(CYCLOHEXYLMETHYL)-L-TYROSINE HETNAM NH2 AMINO GROUP HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 MPT C3 H6 O2 S FORMUL 2 DPR C5 H9 N O2 FORMUL 2 U2X C16 H23 N O3 FORMUL 2 NH2 H2 N FORMUL 5 NAG 9(C8 H15 N O6) FORMUL 14 HOH *(H2 O) HELIX 1 1 GLU G 64 HIS G 72 1 9 HELIX 2 2 ASN G 98 LEU G 116 1 19 HELIX 3 3 ASN G 334 PHE G 353 1 20 HELIX 4 4 ASP G 368 MET G 373 1 6 HELIX 5 5 ASN G 386 LEU G 390 5 5 HELIX 6 6 ILE G 475 TYR G 484 1 10 HELIX 7 7 ASN N 2 SER N 12 1 11 HELIX 8 8 SER H 156 ALA H 158 5 3 HELIX 9 9 LYS H 201 ASN H 204 5 4 HELIX 10 10 GLN L 79 GLU L 83 5 5 HELIX 11 11 SER L 121 GLN L 126 1 6 HELIX 12 12 THR L 181 HIS L 188 1 8 SHEET 1 A 4 LYS G 46 ASP G 47 0 SHEET 2 A 4 TYR G 486 GLN G 490 -1 O GLN G 490 N LYS G 46 SHEET 3 A 4 TYR G 223 CYS G 228 -1 N VAL G 224 O VAL G 489 SHEET 4 A 4 VAL G 242 SER G 243 -1 O SER G 243 N LYS G 227 SHEET 1 B 3 CYS G 74 PRO G 76 0 SHEET 2 B 3 PHE G 53 SER G 56 1 N CYS G 54 O VAL G 75 SHEET 3 B 3 HIS G 216 CYS G 218 -1 O CYS G 218 N PHE G 53 SHEET 1 C 2 ASN G 92 ASN G 94 0 SHEET 2 C 2 THR G 236 PRO G 238 -1 O GLY G 237 N PHE G 93 SHEET 1 D 4 LEU G 259 LEU G 260 0 SHEET 2 D 4 GLY G 451 ARG G 456 -1 O GLY G 451 N LEU G 260 SHEET 3 D 4 ILE G 284 HIS G 287 -1 N ILE G 284 O LEU G 454 SHEET 4 D 4 ILE G 271 SER G 274 -1 N ARG G 273 O ILE G 285 SHEET 1 E 4 LEU G 259 LEU G 260 0 SHEET 2 E 4 GLY G 451 ARG G 456 -1 O GLY G 451 N LEU G 260 SHEET 3 E 4 ASN G 465 PRO G 470 -1 O ARG G 469 N THR G 455 SHEET 4 E 4 THR G 358 PHE G 361 1 N ILE G 360 O GLU G 466 SHEET 1 F 4 ILE G 414 LEU G 416 0 SHEET 2 F 4 TYR G 330 ILE G 333 -1 N CYS G 331 O LEU G 416 SHEET 3 F 4 GLU G 293 ARG G 298 -1 N THR G 297 O TYR G 330 SHEET 4 F 4 ILE G 443 ASN G 448 -1 O ILE G 443 N ARG G 298 SHEET 1 G 3 HIS G 374 CYS G 378 0 SHEET 2 G 3 GLU G 381 CYS G 385 -1 O PHE G 383 N PHE G 376 SHEET 3 G 3 LYS G 419 LYS G 421 -1 O LYS G 419 N TYR G 384 SHEET 1 H 2 ILE G 423 ASN G 425 0 SHEET 2 H 2 GLN G 432 MET G 434 -1 O ALA G 433 N ILE G 424 SHEET 1 I 2 LEU N 16 CYS N 19 0 SHEET 2 I 2 CYS N 24 VAL N 27 -1 O VAL N 27 N LEU N 16 SHEET 1 J 4 GLU H 6 SER H 7 0 SHEET 2 J 4 LEU H 18 CYS H 22 -1 O THR H 21 N SER H 7 SHEET 3 J 4 GLN H 75 LEU H 82 -1 O PHE H 78 N CYS H 22 SHEET 4 J 4 THR H 68 ASP H 72 -1 N ASP H 72 O GLN H 75 SHEET 1 K 6 LEU H 11 VAL H 12 0 SHEET 2 K 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 K 6 ALA H 88 ARG H 94 -1 N TYR H 90 O THR H 107 SHEET 4 K 6 TRP H 35A GLN H 39 -1 N ILE H 37 O TYR H 91 SHEET 5 K 6 GLU H 46 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 K 6 THR H 57 TYR H 59 -1 O TYR H 58 N ASN H 50 SHEET 1 L 4 SER H 120 LEU H 124 0 SHEET 2 L 4 ALA H 137 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 L 4 TYR H 176 THR H 183 -1 O TYR H 176 N TYR H 145 SHEET 4 L 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 M 4 SER H 120 LEU H 124 0 SHEET 2 M 4 ALA H 137 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 M 4 TYR H 176 THR H 183 -1 O TYR H 176 N TYR H 145 SHEET 4 M 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 N 3 THR H 151 TRP H 154 0 SHEET 2 N 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 N 3 THR H 205 ARG H 210 -1 O THR H 205 N HIS H 200 SHEET 1 O 5 SER L 9 GLY L 13 0 SHEET 2 O 5 THR L 102 VAL L 106 1 O LYS L 103 N VAL L 11 SHEET 3 O 5 ASP L 85 THR L 92 -1 N TYR L 86 O THR L 102 SHEET 4 O 5 VAL L 33 GLN L 37 -1 N TYR L 36 O TYR L 87 SHEET 5 O 5 LYS L 45 ILE L 48 -1 O ILE L 48 N TRP L 35 SHEET 1 P 4 SER L 9 GLY L 13 0 SHEET 2 P 4 THR L 102 VAL L 106 1 O LYS L 103 N VAL L 11 SHEET 3 P 4 ASP L 85 THR L 92 -1 N TYR L 86 O THR L 102 SHEET 4 P 4 THR L 95A PHE L 98 -1 O VAL L 97 N SER L 90 SHEET 1 Q 3 ILE L 19 THR L 24 0 SHEET 2 Q 3 THR L 70 ILE L 75 -1 O ALA L 71 N CYS L 23 SHEET 3 Q 3 SER L 63 SER L 67 -1 N SER L 65 O SER L 72 SHEET 1 R 4 THR L 116 PHE L 118 0 SHEET 2 R 4 LEU L 132 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 R 4 TYR L 172 LEU L 178 -1 O SER L 176 N CYS L 134 SHEET 4 R 4 GLU L 160 THR L 161 -1 N GLU L 160 O TYR L 177 SHEET 1 S 4 THR L 116 PHE L 118 0 SHEET 2 S 4 LEU L 132 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 S 4 TYR L 172 LEU L 178 -1 O SER L 176 N CYS L 134 SHEET 4 S 4 SER L 165 LYS L 166 -1 N SER L 165 O ALA L 173 SHEET 1 T 3 THR L 145 ALA L 150 0 SHEET 2 T 3 TYR L 191 HIS L 197 -1 O GLN L 194 N ALA L 147 SHEET 3 T 3 SER L 200 VAL L 206 -1 O VAL L 202 N VAL L 195 SSBOND 1 CYS G 54 CYS G 74 1555 1555 2.03 SSBOND 2 CYS G 119 CYS G 205 1555 1555 2.03 SSBOND 3 CYS G 218 CYS G 247 1555 1555 2.02 SSBOND 4 CYS G 228 CYS G 239 1555 1555 2.03 SSBOND 5 CYS G 296 CYS G 331 1555 1555 2.03 SSBOND 6 CYS G 378 CYS G 445 1555 1555 2.03 SSBOND 7 CYS G 385 CYS G 418 1555 1555 2.02 SSBOND 8 CYS G 395 CYS G 410 1555 1555 2.03 SSBOND 9 MPT N 1 CYS N 19 1555 1555 2.18 SSBOND 10 CYS N 6 CYS N 24 1555 1555 2.02 SSBOND 11 CYS N 10 CYS N 26 1555 1555 2.04 SSBOND 12 CYS H 22 CYS H 92 1555 1555 2.01 SSBOND 13 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 14 CYS L 23 CYS L 88 1555 1555 2.02 SSBOND 15 CYS L 134 CYS L 193 1555 1555 2.04 LINK ND2 ASN G 234 C1 NAG G 501 1555 1555 1.29 LINK ND2 ASN G 241 C1 NAG G 502 1555 1555 1.28 LINK ND2 ASN G 262 C1 NAG G 503 1555 1555 1.34 LINK ND2 ASN G 276 C1 NAG G 504 1555 1555 1.30 LINK ND2 ASN G 289 C1 NAG G 505 1555 1555 1.29 LINK ND2 ASN G 295 C1 NAG G 506 1555 1555 1.29 LINK ND2 ASN G 334 C1 NAG G 507 1555 1555 1.29 LINK ND2 ASN G 386 C1 NAG G 508 1555 1555 1.30 LINK ND2 ASN G 392 C1 NAG G 509 1555 1555 1.30 LINK C MPT N 1 N ASN N 2 1555 1555 1.29 LINK C ALA N 20 N DPR N 21 1555 1555 1.33 LINK C DPR N 21 N THR N 22 1555 1555 1.33 LINK C THR N 22 N U2X N 23 1555 1555 1.27 LINK C U2X N 23 N CYS N 24 1555 1555 1.29 LINK C VAL N 27 N NH2 N 28 1555 1555 1.27 CISPEP 1 ALA G 460 ASN G 461 0 -11.07 CISPEP 2 ASN G 461 ASN G 462 0 3.62 CISPEP 3 SER H 30 SER H 31 0 -1.88 CISPEP 4 SER H 31 GLY H 32 0 0.50 CISPEP 5 GLY H 32 GLY H 33 0 -9.69 CISPEP 6 VAL H 95 PRO H 96 0 -8.17 CISPEP 7 PHE H 146 PRO H 147 0 -4.19 CISPEP 8 GLU H 148 PRO H 149 0 7.80 CISPEP 9 GLY L 28 GLY L 29 0 11.97 CISPEP 10 PRO L 40 ASP L 41 0 -4.19 CISPEP 11 SER L 94 SER L 95 0 -19.53 CISPEP 12 TYR L 140 PRO L 141 0 -2.41 CISPEP 13 GLY L 142 ALA L 143 0 26.61 CISPEP 14 SER L 152 SER L 153 0 -14.82 CISPEP 15 LYS L 156 ALA L 157 0 -4.41 CISPEP 16 ALA L 157 GLY L 158 0 12.33 CISPEP 17 GLY L 158 VAL L 159 0 -22.60 CRYST1 98.305 102.575 108.038 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010172 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009749 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009256 0.00000