HEADER VIRAL PROTEIN 27-SEP-14 4RFU TITLE CRYSTAL STRUCTURE OF TRUNCATED P-DOMAIN FROM GROUPER NERVOUS NECROSIS TITLE 2 VIRUS CAPSID PROTEIN AT 1.2A COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAT PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 215-338; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EPINEPHELUS COIOIDES NERVOUS NECROSIS VIRUS; SOURCE 3 ORGANISM_TAXID: 204929; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PROTRUSION DOMAIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.C.CHEN,C.J.CHEN,M.YOSHIMURA,H.H.GUAN,T.Y.CHEN REVDAT 3 08-NOV-23 4RFU 1 REMARK SEQADV LINK REVDAT 2 04-NOV-15 4RFU 1 JRNL REVDAT 1 07-OCT-15 4RFU 0 JRNL AUTH N.C.CHEN,M.YOSHIMURA,H.H.GUAN,T.Y.WANG,Y.MISUMI,C.C.LIN, JRNL AUTH 2 P.CHUANKHAYAN,A.NAKAGAWA,S.I.CHAN,T.TSUKIHARA,T.Y.CHEN, JRNL AUTH 3 C.J.CHEN JRNL TITL CRYSTAL STRUCTURES OF A PISCINE BETANODAVIRUS: MECHANISMS OF JRNL TITL 2 CAPSID ASSEMBLY AND VIRAL INFECTION JRNL REF PLOS PATHOG. V. 11 05203 2015 JRNL REFN ISSN 1553-7366 JRNL PMID 26491970 JRNL DOI 10.1371/JOURNAL.PPAT.1005203 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 144647 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7230 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 20.7655 - 3.7218 0.98 4796 292 0.1580 0.1571 REMARK 3 2 3.7218 - 2.9568 1.00 4704 246 0.1651 0.1605 REMARK 3 3 2.9568 - 2.5838 1.00 4718 240 0.1870 0.1842 REMARK 3 4 2.5838 - 2.3479 1.00 4670 235 0.1797 0.1787 REMARK 3 5 2.3479 - 2.1799 1.00 4636 249 0.1690 0.1816 REMARK 3 6 2.1799 - 2.0514 1.00 4604 281 0.1655 0.1729 REMARK 3 7 2.0514 - 1.9488 1.00 4584 276 0.1662 0.1805 REMARK 3 8 1.9488 - 1.8640 1.00 4602 240 0.1726 0.1781 REMARK 3 9 1.8640 - 1.7923 1.00 4628 237 0.1686 0.1885 REMARK 3 10 1.7923 - 1.7305 1.00 4619 222 0.1698 0.1912 REMARK 3 11 1.7305 - 1.6764 1.00 4584 250 0.1705 0.1776 REMARK 3 12 1.6764 - 1.6285 1.00 4612 241 0.1711 0.1876 REMARK 3 13 1.6285 - 1.5856 1.00 4584 245 0.1633 0.1638 REMARK 3 14 1.5856 - 1.5470 1.00 4572 238 0.1692 0.1985 REMARK 3 15 1.5470 - 1.5118 1.00 4572 221 0.1708 0.1802 REMARK 3 16 1.5118 - 1.4796 1.00 4631 243 0.1680 0.1803 REMARK 3 17 1.4796 - 1.4501 1.00 4579 225 0.1731 0.1748 REMARK 3 18 1.4501 - 1.4227 1.00 4613 230 0.1763 0.1945 REMARK 3 19 1.4227 - 1.3973 1.00 4593 227 0.1866 0.1979 REMARK 3 20 1.3973 - 1.3736 1.00 4561 236 0.1844 0.1994 REMARK 3 21 1.3736 - 1.3515 1.00 4606 234 0.1861 0.2134 REMARK 3 22 1.3515 - 1.3307 1.00 4495 273 0.1976 0.2240 REMARK 3 23 1.3307 - 1.3111 1.00 4590 236 0.2007 0.2055 REMARK 3 24 1.3111 - 1.2926 1.00 4563 249 0.2057 0.2228 REMARK 3 25 1.2926 - 1.2752 1.00 4553 211 0.2072 0.2092 REMARK 3 26 1.2752 - 1.2586 1.00 4573 239 0.2194 0.2317 REMARK 3 27 1.2586 - 1.2429 0.99 4496 274 0.2258 0.2522 REMARK 3 28 1.2429 - 1.2279 0.99 4523 214 0.2376 0.2421 REMARK 3 29 1.2279 - 1.2136 0.95 4380 216 0.2493 0.2610 REMARK 3 30 1.2136 - 1.2000 0.91 4176 210 0.2512 0.2444 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2853 REMARK 3 ANGLE : 1.044 3895 REMARK 3 CHIRALITY : 0.069 417 REMARK 3 PLANARITY : 0.005 498 REMARK 3 DIHEDRAL : 12.089 993 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RFU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087293. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 144895 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4WIZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CA ACETATE, 0.1M MES, PH 6.5, 10% REMARK 280 (W/V) PEG 8000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.49100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.78850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.72900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.78850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.49100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.72900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 1 REMARK 465 PRO A 2 REMARK 465 GLU A 3 REMARK 465 GLU A 4 REMARK 465 THR A 5 REMARK 465 THR A 6 REMARK 465 GLU A 124 REMARK 465 ASN A 125 REMARK 465 ASN B 1 REMARK 465 PRO B 2 REMARK 465 GLU B 3 REMARK 465 GLU B 4 REMARK 465 THR B 5 REMARK 465 THR B 6 REMARK 465 GLU B 124 REMARK 465 ASN B 125 REMARK 465 ASN C 1 REMARK 465 PRO C 2 REMARK 465 GLU C 3 REMARK 465 GLU C 4 REMARK 465 THR C 5 REMARK 465 THR C 6 REMARK 465 GLU C 124 REMARK 465 ASN C 125 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 421 O HOH C 406 1.82 REMARK 500 O4 PEG A 204 O HOH A 484 1.82 REMARK 500 O HOH A 451 O HOH A 455 1.84 REMARK 500 O HOH A 423 O HOH A 450 1.89 REMARK 500 OG SER C 51 O HOH C 414 1.91 REMARK 500 O HOH A 472 O HOH B 479 1.91 REMARK 500 NH2 ARG A 63 O HOH A 436 1.97 REMARK 500 O HOH B 402 O HOH B 479 2.00 REMARK 500 ND2 ASN C 90 O HOH C 452 2.01 REMARK 500 O HOH B 467 O HOH C 413 2.02 REMARK 500 NH1 ARG C 48 O HOH C 387 2.03 REMARK 500 O HOH B 381 O HOH B 472 2.04 REMARK 500 O HOH A 421 O HOH A 443 2.08 REMARK 500 OD2 ASP B 104 O HOH B 418 2.09 REMARK 500 O HOH B 381 O HOH B 486 2.09 REMARK 500 ND2 ASN C 23 O HOH C 349 2.10 REMARK 500 NH2 ARG C 48 O HOH C 387 2.11 REMARK 500 O HOH A 454 O HOH A 488 2.12 REMARK 500 O HOH B 372 O HOH B 439 2.15 REMARK 500 O HOH C 335 O HOH C 387 2.17 REMARK 500 OG SER A 21 O HOH A 336 2.18 REMARK 500 O HOH B 372 O HOH C 357 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 104 -108.98 -131.95 REMARK 500 THR B 58 18.92 51.69 REMARK 500 ASP B 104 -106.72 -140.07 REMARK 500 ASP C 104 -108.44 -132.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 60 OD2 REMARK 620 2 ASP A 60 OD1 52.4 REMARK 620 3 VAL A 61 O 84.7 99.5 REMARK 620 4 ASP A 62 OD1 80.4 132.3 80.2 REMARK 620 5 HOH B 301 O 123.2 78.3 76.7 144.6 REMARK 620 6 ASP C 60 OD2 84.1 81.2 165.2 88.4 117.6 REMARK 620 7 ASP C 60 OD1 130.2 95.1 142.9 113.7 73.1 51.0 REMARK 620 8 HOH C 301 O 158.3 146.4 80.9 81.1 69.0 106.7 68.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 60 OD1 REMARK 620 2 VAL B 61 O 93.5 REMARK 620 3 HOH B 301 O 73.5 86.7 REMARK 620 4 ASP C 60 OD1 91.5 161.7 77.9 REMARK 620 5 ASP C 62 OD1 145.5 82.4 139.8 103.0 REMARK 620 6 HOH C 301 O 139.8 92.3 67.2 72.8 74.7 REMARK 620 7 HOH C 304 O 72.2 96.5 145.7 101.7 74.3 146.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RFT RELATED DB: PDB REMARK 900 RELATED ID: 4WIZ RELATED DB: PDB DBREF 4RFU A 2 125 UNP Q8JNX5 Q8JNX5_9VIRU 215 338 DBREF 4RFU B 2 125 UNP Q8JNX5 Q8JNX5_9VIRU 215 338 DBREF 4RFU C 2 125 UNP Q8JNX5 Q8JNX5_9VIRU 215 338 SEQADV 4RFU ASN A 1 UNP Q8JNX5 EXPRESSION TAG SEQADV 4RFU ASN B 1 UNP Q8JNX5 EXPRESSION TAG SEQADV 4RFU ASN C 1 UNP Q8JNX5 EXPRESSION TAG SEQRES 1 A 125 ASN PRO GLU GLU THR THR ALA PRO ILE MET THR GLN GLY SEQRES 2 A 125 SER LEU TYR ASN ASP SER LEU SER THR ASN ASP PHE LYS SEQRES 3 A 125 SER ILE LEU LEU GLY SER THR PRO LEU ASP ILE ALA PRO SEQRES 4 A 125 ASP GLY ALA VAL PHE GLN LEU ASP ARG PRO LEU SER ILE SEQRES 5 A 125 ASP TYR SER LEU GLY THR GLY ASP VAL ASP ARG ALA VAL SEQRES 6 A 125 TYR TRP HIS LEU LYS LYS PHE ALA GLY ASN ALA GLY THR SEQRES 7 A 125 PRO ALA GLY TRP PHE ARG TRP GLY ILE TRP ASP ASN PHE SEQRES 8 A 125 ASN LYS THR PHE THR ASP GLY VAL ALA TYR TYR SER ASP SEQRES 9 A 125 GLU GLN PRO ARG GLN ILE LEU LEU PRO VAL GLY THR VAL SEQRES 10 A 125 CYS THR ARG VAL ASP SER GLU ASN SEQRES 1 B 125 ASN PRO GLU GLU THR THR ALA PRO ILE MET THR GLN GLY SEQRES 2 B 125 SER LEU TYR ASN ASP SER LEU SER THR ASN ASP PHE LYS SEQRES 3 B 125 SER ILE LEU LEU GLY SER THR PRO LEU ASP ILE ALA PRO SEQRES 4 B 125 ASP GLY ALA VAL PHE GLN LEU ASP ARG PRO LEU SER ILE SEQRES 5 B 125 ASP TYR SER LEU GLY THR GLY ASP VAL ASP ARG ALA VAL SEQRES 6 B 125 TYR TRP HIS LEU LYS LYS PHE ALA GLY ASN ALA GLY THR SEQRES 7 B 125 PRO ALA GLY TRP PHE ARG TRP GLY ILE TRP ASP ASN PHE SEQRES 8 B 125 ASN LYS THR PHE THR ASP GLY VAL ALA TYR TYR SER ASP SEQRES 9 B 125 GLU GLN PRO ARG GLN ILE LEU LEU PRO VAL GLY THR VAL SEQRES 10 B 125 CYS THR ARG VAL ASP SER GLU ASN SEQRES 1 C 125 ASN PRO GLU GLU THR THR ALA PRO ILE MET THR GLN GLY SEQRES 2 C 125 SER LEU TYR ASN ASP SER LEU SER THR ASN ASP PHE LYS SEQRES 3 C 125 SER ILE LEU LEU GLY SER THR PRO LEU ASP ILE ALA PRO SEQRES 4 C 125 ASP GLY ALA VAL PHE GLN LEU ASP ARG PRO LEU SER ILE SEQRES 5 C 125 ASP TYR SER LEU GLY THR GLY ASP VAL ASP ARG ALA VAL SEQRES 6 C 125 TYR TRP HIS LEU LYS LYS PHE ALA GLY ASN ALA GLY THR SEQRES 7 C 125 PRO ALA GLY TRP PHE ARG TRP GLY ILE TRP ASP ASN PHE SEQRES 8 C 125 ASN LYS THR PHE THR ASP GLY VAL ALA TYR TYR SER ASP SEQRES 9 C 125 GLU GLN PRO ARG GLN ILE LEU LEU PRO VAL GLY THR VAL SEQRES 10 C 125 CYS THR ARG VAL ASP SER GLU ASN HET CA A 201 1 HET GOL A 202 6 HET GOL A 203 6 HET PEG A 204 7 HET CA B 201 1 HET GOL B 202 6 HET GOL C 201 6 HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 CA 2(CA 2+) FORMUL 5 GOL 4(C3 H8 O3) FORMUL 7 PEG C4 H10 O3 FORMUL 11 HOH *542(H2 O) HELIX 1 1 ASP A 18 LEU A 20 5 3 HELIX 2 2 ILE A 28 GLY A 31 5 4 HELIX 3 3 SER A 32 ALA A 38 1 7 HELIX 4 4 ASP B 18 LEU B 20 5 3 HELIX 5 5 ILE B 28 GLY B 31 5 4 HELIX 6 6 SER B 32 ILE B 37 1 6 HELIX 7 7 ASP C 18 LEU C 20 5 3 HELIX 8 8 ILE C 28 GLY C 31 5 4 HELIX 9 9 SER C 32 ALA C 38 1 7 SHEET 1 A 6 ILE A 9 MET A 10 0 SHEET 2 A 6 VAL A 117 ARG A 120 -1 O CYS A 118 N ILE A 9 SHEET 3 A 6 VAL A 43 TYR A 54 -1 N GLN A 45 O THR A 119 SHEET 4 A 6 ASP A 62 PHE A 72 -1 O TYR A 66 N LEU A 50 SHEET 5 A 6 TRP A 82 ASP A 89 -1 O TRP A 82 N PHE A 72 SHEET 6 A 6 PHE A 25 LYS A 26 -1 N PHE A 25 O PHE A 83 SHEET 1 B 6 ILE A 9 MET A 10 0 SHEET 2 B 6 VAL A 117 ARG A 120 -1 O CYS A 118 N ILE A 9 SHEET 3 B 6 VAL A 43 TYR A 54 -1 N GLN A 45 O THR A 119 SHEET 4 B 6 ASP A 62 PHE A 72 -1 O TYR A 66 N LEU A 50 SHEET 5 B 6 TRP A 82 ASP A 89 -1 O TRP A 82 N PHE A 72 SHEET 6 B 6 THR A 94 ASP A 97 -1 O THR A 94 N ASP A 89 SHEET 1 C 2 LEU A 15 TYR A 16 0 SHEET 2 C 2 ILE A 110 LEU A 112 -1 O LEU A 112 N LEU A 15 SHEET 1 D 6 ILE B 9 MET B 10 0 SHEET 2 D 6 VAL B 117 ARG B 120 -1 O CYS B 118 N ILE B 9 SHEET 3 D 6 VAL B 43 GLY B 57 -1 N GLN B 45 O THR B 119 SHEET 4 D 6 ASP B 60 PHE B 72 -1 O TYR B 66 N LEU B 50 SHEET 5 D 6 TRP B 82 ASP B 89 -1 O TRP B 82 N PHE B 72 SHEET 6 D 6 PHE B 25 LYS B 26 -1 N PHE B 25 O PHE B 83 SHEET 1 E 6 ILE B 9 MET B 10 0 SHEET 2 E 6 VAL B 117 ARG B 120 -1 O CYS B 118 N ILE B 9 SHEET 3 E 6 VAL B 43 GLY B 57 -1 N GLN B 45 O THR B 119 SHEET 4 E 6 ASP B 60 PHE B 72 -1 O TYR B 66 N LEU B 50 SHEET 5 E 6 TRP B 82 ASP B 89 -1 O TRP B 82 N PHE B 72 SHEET 6 E 6 THR B 94 ASP B 97 -1 O THR B 94 N ASP B 89 SHEET 1 F 2 LEU B 15 TYR B 16 0 SHEET 2 F 2 ILE B 110 LEU B 112 -1 O LEU B 112 N LEU B 15 SHEET 1 G 6 ILE C 9 MET C 10 0 SHEET 2 G 6 VAL C 117 ARG C 120 -1 O CYS C 118 N ILE C 9 SHEET 3 G 6 VAL C 43 TYR C 54 -1 N GLN C 45 O THR C 119 SHEET 4 G 6 ASP C 62 PHE C 72 -1 O ASP C 62 N TYR C 54 SHEET 5 G 6 TRP C 82 ASP C 89 -1 O TRP C 82 N PHE C 72 SHEET 6 G 6 PHE C 25 LYS C 26 -1 N PHE C 25 O PHE C 83 SHEET 1 H 6 ILE C 9 MET C 10 0 SHEET 2 H 6 VAL C 117 ARG C 120 -1 O CYS C 118 N ILE C 9 SHEET 3 H 6 VAL C 43 TYR C 54 -1 N GLN C 45 O THR C 119 SHEET 4 H 6 ASP C 62 PHE C 72 -1 O ASP C 62 N TYR C 54 SHEET 5 H 6 TRP C 82 ASP C 89 -1 O TRP C 82 N PHE C 72 SHEET 6 H 6 THR C 94 ASP C 97 -1 O THR C 94 N ASP C 89 SHEET 1 I 2 LEU C 15 TYR C 16 0 SHEET 2 I 2 ILE C 110 LEU C 112 -1 O LEU C 111 N LEU C 15 LINK OD2 ASP A 60 CA CA A 201 1555 1555 2.47 LINK OD1 ASP A 60 CA CA A 201 1555 1555 2.47 LINK O VAL A 61 CA CA A 201 1555 1555 2.32 LINK OD1 ASP A 62 CA CA A 201 1555 1555 2.34 LINK CA CA A 201 O HOH B 301 1555 1555 2.45 LINK CA CA A 201 OD2 ASP C 60 1555 1555 2.45 LINK CA CA A 201 OD1 ASP C 60 1555 1555 2.61 LINK CA CA A 201 O HOH C 301 1555 1555 2.49 LINK OD1 ASP B 60 CA CA B 201 1555 1555 2.36 LINK O VAL B 61 CA CA B 201 1555 1555 2.32 LINK CA CA B 201 O HOH B 301 1555 1555 2.51 LINK CA CA B 201 OD1 ASP C 60 1555 1555 2.27 LINK CA CA B 201 OD1 ASP C 62 1555 1555 2.38 LINK CA CA B 201 O HOH C 301 1555 1555 2.55 LINK CA CA B 201 O HOH C 304 1555 1555 2.42 SITE 1 AC1 7 ASP A 60 VAL A 61 ASP A 62 CA B 201 SITE 2 AC1 7 HOH B 301 ASP C 60 HOH C 301 SITE 1 AC2 7 LYS A 70 PHE A 72 PHE A 95 ASP A 97 SITE 2 AC2 7 HOH A 397 HOH A 456 ARG C 84 SITE 1 AC3 6 ASN A 17 TYR A 101 SER A 103 GLN A 106 SITE 2 AC3 6 ARG A 108 HOH A 431 SITE 1 AC4 10 ASP A 97 VAL A 99 HOH A 307 HOH A 331 SITE 2 AC4 10 HOH A 367 HOH A 396 HOH A 441 HOH A 463 SITE 3 AC4 10 HOH A 484 PRO C 107 SITE 1 AC5 8 CA A 201 ASP B 60 VAL B 61 HOH B 301 SITE 2 AC5 8 ASP C 60 ASP C 62 HOH C 301 HOH C 304 SITE 1 AC6 5 ASN B 17 TYR B 101 SER B 103 ASP B 104 SITE 2 AC6 5 GLN B 106 SITE 1 AC7 7 ASN C 17 TYR C 101 SER C 103 GLN C 106 SITE 2 AC7 7 ARG C 108 HOH C 362 HOH C 429 CRYST1 64.982 83.458 85.577 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015389 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011982 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011685 0.00000