HEADER TRANSCRIPTION 29-SEP-14 4RG2 TITLE TUDOR DOMAIN OF TUMOR SUPPRESSOR P53BP1 WITH SMALL MOLECULE LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR SUPPRESSOR P53-BINDING PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TUDOR DOMAIN (UNP RESIDUES 1483-1606); COMPND 5 SYNONYM: 53BP1, P53-BINDING PROTEIN 1, P53BP1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TP53BP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS 53BP1 TUDOR, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 2 SGC, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.DONG,P.MADER,L.JAMES,M.PERFETTI,W.TEMPEL,S.FRYE,C.BOUNTRA, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,P.J.BROWN,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (SGC) REVDAT 4 20-SEP-23 4RG2 1 REMARK SEQADV REVDAT 3 16-MAY-18 4RG2 1 JRNL REVDAT 2 22-NOV-17 4RG2 1 REMARK REVDAT 1 15-OCT-14 4RG2 0 JRNL AUTH M.T.PERFETTI,B.M.BAUGHMAN,B.M.DICKSON,Y.MU,G.CUI,P.MADER, JRNL AUTH 2 A.DONG,J.L.NORRIS,S.B.ROTHBART,B.D.STRAHL,P.J.BROWN, JRNL AUTH 3 W.P.JANZEN,C.H.ARROWSMITH,G.MER,K.M.MCBRIDE,L.I.JAMES, JRNL AUTH 4 S.V.FRYE JRNL TITL IDENTIFICATION OF A FRAGMENT-LIKE SMALL MOLECULE LIGAND FOR JRNL TITL 2 THE METHYL-LYSINE BINDING PROTEIN, 53BP1. JRNL REF ACS CHEM. BIOL. V. 10 1072 2015 JRNL REFN ESSN 1554-8937 JRNL PMID 25590533 JRNL DOI 10.1021/CB500956G REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 47270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1433 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2934 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1886 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 189 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.25000 REMARK 3 B22 (A**2) : 2.93000 REMARK 3 B33 (A**2) : -1.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.074 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.074 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.762 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2166 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2058 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2930 ; 1.339 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4734 ; 0.735 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 277 ; 6.589 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;30.940 ;23.474 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 376 ;12.667 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.393 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 301 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2558 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 516 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1054 ; 1.723 ; 2.731 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1055 ; 1.722 ; 2.731 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1336 ; 2.674 ; 4.079 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RG2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000087301. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK HIGH-RESOLUTION REMARK 200 DOUBLE-CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48740 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.67000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: PDB ENTRY 2G3R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG3350, 0.15 M DL-MALIC ACID, PH REMARK 280 7.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.67400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.67400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.77400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.22900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.77400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.22900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.67400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.77400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.22900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.67400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.77400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.22900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1829 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1840 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1820 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1482 REMARK 465 GLY A 1483 REMARK 465 ASN A 1484 REMARK 465 PRO A 1604 REMARK 465 TYR A 1605 REMARK 465 GLU A 1606 REMARK 465 GLY B 1603 REMARK 465 PRO B 1604 REMARK 465 TYR B 1605 REMARK 465 GLU B 1606 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A1497 OG REMARK 470 LYS A1530 CE NZ REMARK 470 GLU A1564 CG CD OE1 OE2 REMARK 470 LYS A1582 CE NZ REMARK 470 SER B1496 OG REMARK 470 SER B1497 OG REMARK 470 LYS B1563 CD CE NZ REMARK 470 GLN B1577 CD OE1 NE2 REMARK 470 LYS B1579 CE NZ REMARK 470 ARG B1597 CG CD NE CZ NH1 NH2 REMARK 470 GLU B1598 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B1508 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B1575 -109.97 65.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3OO A 1701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1701 DBREF 4RG2 A 1483 1606 UNP Q12888 TP53B_HUMAN 1483 1606 DBREF 4RG2 B 1483 1606 UNP Q12888 TP53B_HUMAN 1483 1606 SEQADV 4RG2 GLY A 1482 UNP Q12888 EXPRESSION TAG SEQADV 4RG2 GLY B 1482 UNP Q12888 EXPRESSION TAG SEQRES 1 A 125 GLY GLY ASN SER PHE VAL GLY LEU ARG VAL VAL ALA LYS SEQRES 2 A 125 TRP SER SER ASN GLY TYR PHE TYR SER GLY LYS ILE THR SEQRES 3 A 125 ARG ASP VAL GLY ALA GLY LYS TYR LYS LEU LEU PHE ASP SEQRES 4 A 125 ASP GLY TYR GLU CYS ASP VAL LEU GLY LYS ASP ILE LEU SEQRES 5 A 125 LEU CYS ASP PRO ILE PRO LEU ASP THR GLU VAL THR ALA SEQRES 6 A 125 LEU SER GLU ASP GLU TYR PHE SER ALA GLY VAL VAL LYS SEQRES 7 A 125 GLY HIS ARG LYS GLU SER GLY GLU LEU TYR TYR SER ILE SEQRES 8 A 125 GLU LYS GLU GLY GLN ARG LYS TRP TYR LYS ARG MET ALA SEQRES 9 A 125 VAL ILE LEU SER LEU GLU GLN GLY ASN ARG LEU ARG GLU SEQRES 10 A 125 GLN TYR GLY LEU GLY PRO TYR GLU SEQRES 1 B 125 GLY GLY ASN SER PHE VAL GLY LEU ARG VAL VAL ALA LYS SEQRES 2 B 125 TRP SER SER ASN GLY TYR PHE TYR SER GLY LYS ILE THR SEQRES 3 B 125 ARG ASP VAL GLY ALA GLY LYS TYR LYS LEU LEU PHE ASP SEQRES 4 B 125 ASP GLY TYR GLU CYS ASP VAL LEU GLY LYS ASP ILE LEU SEQRES 5 B 125 LEU CYS ASP PRO ILE PRO LEU ASP THR GLU VAL THR ALA SEQRES 6 B 125 LEU SER GLU ASP GLU TYR PHE SER ALA GLY VAL VAL LYS SEQRES 7 B 125 GLY HIS ARG LYS GLU SER GLY GLU LEU TYR TYR SER ILE SEQRES 8 B 125 GLU LYS GLU GLY GLN ARG LYS TRP TYR LYS ARG MET ALA SEQRES 9 B 125 VAL ILE LEU SER LEU GLU GLN GLY ASN ARG LEU ARG GLU SEQRES 10 B 125 GLN TYR GLY LEU GLY PRO TYR GLU HET 3OO A1701 36 HET EDO A1702 4 HET EDO A1703 4 HET UNX A1704 1 HET UNX A1705 1 HET UNX A1706 1 HET UNX A1707 1 HET UNX A1708 1 HET UNX A1709 1 HET UNX A1710 1 HET EDO B1701 4 HET UNX B1702 1 HET UNX B1703 1 HET UNX B1704 1 HET UNX B1705 1 HET UNX B1706 1 HETNAM 3OO 3-BROMO-N-[3-(TERT-BUTYLAMINO)PROPYL]BENZAMIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM UNX UNKNOWN ATOM OR ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 3OO C14 H21 BR N2 O FORMUL 4 EDO 3(C2 H6 O2) FORMUL 6 UNX 12(X) FORMUL 19 HOH *189(H2 O) HELIX 1 1 SER A 1589 GLY A 1601 1 13 HELIX 2 2 SER B 1589 ARG B 1595 1 7 HELIX 3 3 LEU B 1596 GLY B 1601 1 6 SHEET 1 A 5 GLU A1524 LEU A1528 0 SHEET 2 A 5 LYS A1514 PHE A1519 -1 N LEU A1517 O CYS A1525 SHEET 3 A 5 PHE A1501 ASP A1509 -1 N THR A1507 O LYS A1516 SHEET 4 A 5 ARG A1490 LYS A1494 -1 N ALA A1493 O TYR A1502 SHEET 5 A 5 ILE A1532 LEU A1533 -1 O LEU A1533 N VAL A1492 SHEET 1 B 5 GLN A1577 LYS A1582 0 SHEET 2 B 5 GLU A1567 LYS A1574 -1 N TYR A1570 O TYR A1581 SHEET 3 B 5 ALA A1555 GLU A1564 -1 N LYS A1559 O SER A1571 SHEET 4 B 5 GLU A1543 ALA A1546 -1 N VAL A1544 O GLY A1556 SHEET 5 B 5 VAL A1586 ILE A1587 -1 O ILE A1587 N THR A1545 SHEET 1 C 5 GLU B1524 LEU B1528 0 SHEET 2 C 5 LYS B1514 PHE B1519 -1 N LEU B1517 O CYS B1525 SHEET 3 C 5 PHE B1501 GLY B1511 -1 N LYS B1505 O LEU B1518 SHEET 4 C 5 ARG B1490 LYS B1494 -1 N ALA B1493 O TYR B1502 SHEET 5 C 5 ILE B1532 LEU B1533 -1 O LEU B1533 N VAL B1492 SHEET 1 D 5 GLN B1577 LYS B1582 0 SHEET 2 D 5 GLU B1567 LYS B1574 -1 N ILE B1572 O LYS B1579 SHEET 3 D 5 ALA B1555 GLU B1564 -1 N LYS B1559 O SER B1571 SHEET 4 D 5 GLU B1543 ALA B1546 -1 N VAL B1544 O GLY B1556 SHEET 5 D 5 VAL B1586 ILE B1587 -1 O ILE B1587 N THR B1545 CISPEP 1 ASP A 1536 PRO A 1537 0 2.74 CISPEP 2 ASP B 1536 PRO B 1537 0 3.88 SITE 1 AC1 11 TRP A1495 ASP A1521 TYR A1523 MET A1584 SITE 2 AC1 11 TRP B1495 TYR B1502 PHE B1519 ASP B1521 SITE 3 AC1 11 MET B1584 HOH B1817 HOH B1870 SITE 1 AC2 7 ASP A1550 GLU A1551 TYR A1552 PHE A1553 SITE 2 AC2 7 SER A1554 ASP B1509 HOH B1835 SITE 1 AC3 5 LYS A1505 ARG A1508 LEU A1518 HOH A1903 SITE 2 AC3 5 HOH A1910 SITE 1 AC4 3 GLY B1511 LYS B1514 TYR B1515 CRYST1 73.548 100.458 83.348 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013597 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009954 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011998 0.00000