HEADER OXIDOREDUCTASE 29-SEP-14 4RGB TITLE CRYSTAL STRUCTURE OF A PUTATIVE CARVEOL DEHYDROGENASE FROM TITLE 2 MYCOBACTERIUM AVIUM BOUND TO NAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARVEOL DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.275; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM AVIUM; SOURCE 3 ORGANISM_TAXID: 243243; SOURCE 4 STRAIN: 104; SOURCE 5 GENE: MAV_1810; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PAVA0421 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, SSGCID, PUTATIVE NON-EXCHANGEABLE NAD, KEYWDS 4 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 20-SEP-23 4RGB 1 REMARK SEQADV REVDAT 2 08-FEB-17 4RGB 1 JRNL REVDAT 1 15-OCT-14 4RGB 0 JRNL AUTH D.H.HAFT,P.G.PIERCE,S.J.MAYCLIN,A.SULLIVAN,A.S.GARDBERG, JRNL AUTH 2 J.ABENDROTH,D.W.BEGLEY,I.Q.PHAN,B.L.STAKER,P.J.MYLER, JRNL AUTH 3 V.M.MARATHIAS,D.D.LORIMER,T.E.EDWARDS JRNL TITL MYCOFACTOCIN-ASSOCIATED MYCOBACTERIAL DEHYDROGENASES WITH JRNL TITL 2 NON-EXCHANGEABLE NAD COFACTORS. JRNL REF SCI REP V. 7 41074 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28120876 JRNL DOI 10.1038/SREP41074 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 40966 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2168 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2786 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4019 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 238 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.71000 REMARK 3 B22 (A**2) : -1.75000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.177 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.157 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.163 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.315 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4187 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3971 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5708 ; 1.441 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9098 ; 0.930 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 550 ; 6.175 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;41.047 ;24.337 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 662 ;13.531 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;20.678 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 683 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4788 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 900 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2194 ; 0.777 ; 1.425 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2193 ; 0.772 ; 1.424 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2740 ; 1.322 ; 2.132 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 16 289 B 16 289 16411 0.060 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 98.8740 14.7377 118.8135 REMARK 3 T TENSOR REMARK 3 T11: 0.5252 T22: 0.1151 REMARK 3 T33: 0.0302 T12: 0.0154 REMARK 3 T13: 0.0005 T23: 0.0375 REMARK 3 L TENSOR REMARK 3 L11: 0.5091 L22: 1.6895 REMARK 3 L33: 2.8182 L12: -0.0685 REMARK 3 L13: 0.0305 L23: -0.0315 REMARK 3 S TENSOR REMARK 3 S11: 0.0182 S12: 0.0532 S13: 0.0652 REMARK 3 S21: -0.2448 S22: 0.1009 S23: 0.1505 REMARK 3 S31: -0.6853 S32: -0.2133 S33: -0.1190 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 16 B 301 REMARK 3 ORIGIN FOR THE GROUP (A): 105.3323 16.0980 151.7280 REMARK 3 T TENSOR REMARK 3 T11: 0.5224 T22: 0.1018 REMARK 3 T33: 0.0121 T12: -0.0138 REMARK 3 T13: 0.0323 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 0.4116 L22: 1.6057 REMARK 3 L33: 3.3080 L12: 0.1345 REMARK 3 L13: 0.0994 L23: 0.0853 REMARK 3 S TENSOR REMARK 3 S11: 0.0354 S12: -0.0765 S13: 0.0401 REMARK 3 S21: 0.2816 S22: 0.0913 S23: -0.0029 REMARK 3 S31: -0.7880 S32: 0.1610 S33: -0.1267 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4RGB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000087310. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43134 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.38200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3TSC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MYAVA.01326.G.A1 PS01550 AT 20 MG/ML REMARK 280 WITH 2.5 MM NAD AGAINST MCSG1 CONDITION C12, 0.1 M BISTRISHCL PH REMARK 280 6.5, 25% PEG 3350 SUPPLEMENTED WITH 15% EG AS CRYO-PROTECTANT, REMARK 280 CRYSTAL TRACKING ID 257485C12, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.93500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.93500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.26500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.18500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.26500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.18500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.93500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.26500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.18500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.93500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.26500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.18500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 MET A 0 REMARK 465 LEU A 1 REMARK 465 ARG A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ASN A 5 REMARK 465 LEU A 6 REMARK 465 ASP A 7 REMARK 465 ARG A 8 REMARK 465 SER A 9 REMARK 465 PRO A 10 REMARK 465 GLU A 11 REMARK 465 GLU A 12 REMARK 465 TYR A 13 REMARK 465 GLY A 14 REMARK 465 MET A 15 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 MET B 0 REMARK 465 LEU B 1 REMARK 465 ARG B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 4 REMARK 465 ASN B 5 REMARK 465 LEU B 6 REMARK 465 ASP B 7 REMARK 465 ARG B 8 REMARK 465 SER B 9 REMARK 465 PRO B 10 REMARK 465 GLU B 11 REMARK 465 GLU B 12 REMARK 465 TYR B 13 REMARK 465 GLY B 14 REMARK 465 MET B 15 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 GLU A 67 CG CD OE1 OE2 REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 ARG A 158 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 231 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 232 CG CD CE NZ REMARK 470 VAL A 233 CG1 CG2 REMARK 470 ILE A 234 CG1 CG2 CD1 REMARK 470 GLU A 235 CG CD OE1 OE2 REMARK 470 GLU A 236 CG CD OE1 OE2 REMARK 470 VAL A 241 CG1 CG2 REMARK 470 ASN A 242 CG OD1 ND2 REMARK 470 ARG A 289 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 62 CG CD CE NZ REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 GLU B 105 CG CD OE1 OE2 REMARK 470 ARG B 158 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 171 CG1 CG2 CD1 REMARK 470 PHE B 231 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 232 CG CD CE NZ REMARK 470 VAL B 233 CG1 CG2 REMARK 470 ILE B 234 CG1 CG2 CD1 REMARK 470 GLU B 235 CG CD OE1 OE2 REMARK 470 GLU B 236 CG CD OE1 OE2 REMARK 470 VAL B 241 CG1 CG2 REMARK 470 ASN B 242 CG OD1 ND2 REMARK 470 ARG B 289 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 210 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 210 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 210 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 210 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 257 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 60 32.46 -84.01 REMARK 500 ASN A 123 107.26 -173.72 REMARK 500 LEU A 141 -64.27 -107.70 REMARK 500 SER A 168 -150.57 -90.74 REMARK 500 PRO B 60 31.89 -82.95 REMARK 500 ASN B 123 108.45 -174.91 REMARK 500 LEU B 141 -64.20 -108.38 REMARK 500 SER B 168 -151.99 -91.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OEC RELATED DB: PDB REMARK 900 RELATED ID: 3PGX RELATED DB: PDB REMARK 900 RELATED ID: 3PXX RELATED DB: PDB REMARK 900 RELATED ID: 3TSC RELATED DB: PDB REMARK 900 RELATED ID: 3UVE RELATED DB: PDB REMARK 900 RELATED ID: 3UWR RELATED DB: PDB REMARK 900 RELATED ID: SSGCID-MYAVA.01326.G RELATED DB: TARGETTRACK DBREF 4RGB A 0 289 UNP A0QDP5 A0QDP5_MYCA1 1 289 DBREF 4RGB B 0 289 UNP A0QDP5 A0QDP5_MYCA1 1 289 SEQADV 4RGB GLY A -4 UNP A0QDP5 EXPRESSION TAG SEQADV 4RGB PRO A -3 UNP A0QDP5 EXPRESSION TAG SEQADV 4RGB GLY A -2 UNP A0QDP5 EXPRESSION TAG SEQADV 4RGB SER A -1 UNP A0QDP5 EXPRESSION TAG SEQADV 4RGB LEU A 1 UNP A0QDP5 EXPRESSION TAG SEQADV 4RGB GLY B -4 UNP A0QDP5 EXPRESSION TAG SEQADV 4RGB PRO B -3 UNP A0QDP5 EXPRESSION TAG SEQADV 4RGB GLY B -2 UNP A0QDP5 EXPRESSION TAG SEQADV 4RGB SER B -1 UNP A0QDP5 EXPRESSION TAG SEQADV 4RGB LEU B 1 UNP A0QDP5 EXPRESSION TAG SEQRES 1 A 294 GLY PRO GLY SER MET LEU ARG ALA ALA ASN LEU ASP ARG SEQRES 2 A 294 SER PRO GLU GLU TYR GLY MET GLY SER LEU ASP GLY ARG SEQRES 3 A 294 VAL VAL PHE ILE THR GLY ALA ALA ARG GLY GLN GLY ARG SEQRES 4 A 294 SER HIS ALA VAL MET CYS ALA GLU GLN GLY ALA ASN ILE SEQRES 5 A 294 VAL GLY VAL ASP ILE CYS GLU ASP ILE ASP ILE VAL PRO SEQRES 6 A 294 TYR LYS LEU GLY THR TYR GLU GLU LEU GLU GLU THR ALA SEQRES 7 A 294 ARG LEU VAL GLU LYS THR GLY GLN GLU MET LEU PHE ARG SEQRES 8 A 294 LYS ALA ASP VAL ARG ASP LYS ALA VAL LEU GLN GLU VAL SEQRES 9 A 294 PHE ASP ALA GLY VAL GLU GLN PHE GLY HIS ILE ASP THR SEQRES 10 A 294 VAL ILE ALA ASN ALA GLY VAL VAL LEU THR ASN PRO ASP SEQRES 11 A 294 GLU ARG ASP ALA SER GLU ALA LEU ARG LEU GLY LEU ASP SEQRES 12 A 294 ILE MET LEU ILE GLY VAL TRP ASN THR PHE GLN VAL ALA SEQRES 13 A 294 ILE PRO HIS MET LYS GLU ARG GLY GLN GLY GLY ASN LEU SEQRES 14 A 294 ILE ALA THR SER SER MET ILE ALA LEU LEU ASP LEU THR SEQRES 15 A 294 ASP GLY ARG GLY GLY THR ASP ALA TYR LEU THR SER LYS SEQRES 16 A 294 LEU ALA ILE THR GLY LEU VAL ARG SER TYR ALA LEU MET SEQRES 17 A 294 LEU ALA ALA ASP ARG ILE ARG VAL ASN GLY VAL ALA PRO SEQRES 18 A 294 THR ASN CYS SER THR PRO MET ILE THR GLU ASN PRO ALA SEQRES 19 A 294 LEU PHE LYS VAL ILE GLU GLU ASN PRO HIS LEU VAL ASN SEQRES 20 A 294 ALA MET SER THR ALA LEU PRO ASP PHE PRO MET ILE GLU SEQRES 21 A 294 PRO ARG ASP VAL SER ASN ALA ILE LEU PHE LEU ILE SER SEQRES 22 A 294 ASP ALA GLY ARG SER PHE THR GLY SER VAL LEU LYS VAL SEQRES 23 A 294 ASP ALA GLY MET ASP VAL LYS ARG SEQRES 1 B 294 GLY PRO GLY SER MET LEU ARG ALA ALA ASN LEU ASP ARG SEQRES 2 B 294 SER PRO GLU GLU TYR GLY MET GLY SER LEU ASP GLY ARG SEQRES 3 B 294 VAL VAL PHE ILE THR GLY ALA ALA ARG GLY GLN GLY ARG SEQRES 4 B 294 SER HIS ALA VAL MET CYS ALA GLU GLN GLY ALA ASN ILE SEQRES 5 B 294 VAL GLY VAL ASP ILE CYS GLU ASP ILE ASP ILE VAL PRO SEQRES 6 B 294 TYR LYS LEU GLY THR TYR GLU GLU LEU GLU GLU THR ALA SEQRES 7 B 294 ARG LEU VAL GLU LYS THR GLY GLN GLU MET LEU PHE ARG SEQRES 8 B 294 LYS ALA ASP VAL ARG ASP LYS ALA VAL LEU GLN GLU VAL SEQRES 9 B 294 PHE ASP ALA GLY VAL GLU GLN PHE GLY HIS ILE ASP THR SEQRES 10 B 294 VAL ILE ALA ASN ALA GLY VAL VAL LEU THR ASN PRO ASP SEQRES 11 B 294 GLU ARG ASP ALA SER GLU ALA LEU ARG LEU GLY LEU ASP SEQRES 12 B 294 ILE MET LEU ILE GLY VAL TRP ASN THR PHE GLN VAL ALA SEQRES 13 B 294 ILE PRO HIS MET LYS GLU ARG GLY GLN GLY GLY ASN LEU SEQRES 14 B 294 ILE ALA THR SER SER MET ILE ALA LEU LEU ASP LEU THR SEQRES 15 B 294 ASP GLY ARG GLY GLY THR ASP ALA TYR LEU THR SER LYS SEQRES 16 B 294 LEU ALA ILE THR GLY LEU VAL ARG SER TYR ALA LEU MET SEQRES 17 B 294 LEU ALA ALA ASP ARG ILE ARG VAL ASN GLY VAL ALA PRO SEQRES 18 B 294 THR ASN CYS SER THR PRO MET ILE THR GLU ASN PRO ALA SEQRES 19 B 294 LEU PHE LYS VAL ILE GLU GLU ASN PRO HIS LEU VAL ASN SEQRES 20 B 294 ALA MET SER THR ALA LEU PRO ASP PHE PRO MET ILE GLU SEQRES 21 B 294 PRO ARG ASP VAL SER ASN ALA ILE LEU PHE LEU ILE SER SEQRES 22 B 294 ASP ALA GLY ARG SER PHE THR GLY SER VAL LEU LYS VAL SEQRES 23 B 294 ASP ALA GLY MET ASP VAL LYS ARG HET NAD A 301 44 HET NAD B 301 44 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 5 HOH *238(H2 O) HELIX 1 1 ARG A 30 GLN A 43 1 14 HELIX 2 2 THR A 65 THR A 79 1 15 HELIX 3 3 ASP A 92 GLY A 108 1 17 HELIX 4 4 ASP A 128 LEU A 141 1 14 HELIX 5 5 LEU A 141 VAL A 150 1 10 HELIX 6 6 ALA A 151 GLY A 159 1 9 HELIX 7 7 ILE A 171 ASP A 175 5 5 HELIX 8 8 ARG A 180 ALA A 205 1 26 HELIX 9 9 THR A 221 GLU A 226 1 6 HELIX 10 10 ASN A 227 ASN A 237 1 11 HELIX 11 11 PRO A 238 VAL A 241 5 4 HELIX 12 12 GLU A 255 SER A 268 1 14 HELIX 13 13 ASP A 269 ARG A 272 5 4 HELIX 14 14 GLY A 284 LYS A 288 5 5 HELIX 15 15 ARG B 30 GLN B 43 1 14 HELIX 16 16 THR B 65 THR B 79 1 15 HELIX 17 17 ASP B 92 GLY B 108 1 17 HELIX 18 18 ASP B 128 LEU B 141 1 14 HELIX 19 19 LEU B 141 VAL B 150 1 10 HELIX 20 20 ALA B 151 GLY B 159 1 9 HELIX 21 21 ILE B 171 ASP B 175 5 5 HELIX 22 22 ARG B 180 ALA B 205 1 26 HELIX 23 23 THR B 221 GLU B 226 1 6 HELIX 24 24 ASN B 227 ASN B 237 1 11 HELIX 25 25 PRO B 238 VAL B 241 5 4 HELIX 26 26 GLU B 255 SER B 268 1 14 HELIX 27 27 ASP B 269 ARG B 272 5 4 HELIX 28 28 GLY B 284 LYS B 288 5 5 SHEET 1 A 7 MET A 83 LYS A 87 0 SHEET 2 A 7 ASN A 46 ASP A 51 1 N GLY A 49 O LEU A 84 SHEET 3 A 7 VAL A 22 THR A 26 1 N VAL A 23 O VAL A 48 SHEET 4 A 7 THR A 112 ALA A 115 1 O THR A 112 N PHE A 24 SHEET 5 A 7 GLY A 162 THR A 167 1 O ILE A 165 N ALA A 115 SHEET 6 A 7 ILE A 209 PRO A 216 1 O ARG A 210 N GLY A 162 SHEET 7 A 7 VAL A 278 VAL A 281 1 O LEU A 279 N ALA A 215 SHEET 1 B 7 MET B 83 LYS B 87 0 SHEET 2 B 7 ASN B 46 ASP B 51 1 N GLY B 49 O LEU B 84 SHEET 3 B 7 VAL B 22 THR B 26 1 N VAL B 23 O VAL B 48 SHEET 4 B 7 THR B 112 ALA B 115 1 O ILE B 114 N PHE B 24 SHEET 5 B 7 GLY B 162 THR B 167 1 O ILE B 165 N ALA B 115 SHEET 6 B 7 ILE B 209 PRO B 216 1 O ARG B 210 N GLY B 162 SHEET 7 B 7 VAL B 278 VAL B 281 1 O LEU B 279 N ALA B 215 SITE 1 AC1 30 GLY A 27 ALA A 29 ARG A 30 GLY A 31 SITE 2 AC1 30 GLN A 32 ASP A 51 ILE A 52 GLY A 64 SITE 3 AC1 30 ALA A 88 ASP A 89 VAL A 90 ASN A 116 SITE 4 AC1 30 ALA A 117 GLY A 118 VAL A 119 THR A 167 SITE 5 AC1 30 SER A 168 SER A 169 TYR A 186 LYS A 190 SITE 6 AC1 30 PRO A 216 THR A 217 ASN A 218 CYS A 219 SITE 7 AC1 30 THR A 221 PRO A 222 MET A 223 ILE A 224 SITE 8 AC1 30 HOH A 402 HOH A 414 SITE 1 AC2 31 GLY B 27 ALA B 29 ARG B 30 GLY B 31 SITE 2 AC2 31 GLN B 32 ASP B 51 ILE B 52 LEU B 63 SITE 3 AC2 31 GLY B 64 ALA B 88 ASP B 89 VAL B 90 SITE 4 AC2 31 ASN B 116 ALA B 117 GLY B 118 VAL B 119 SITE 5 AC2 31 THR B 167 SER B 168 SER B 169 TYR B 186 SITE 6 AC2 31 LYS B 190 PRO B 216 THR B 217 ASN B 218 SITE 7 AC2 31 CYS B 219 THR B 221 PRO B 222 MET B 223 SITE 8 AC2 31 ILE B 224 HOH B 403 HOH B 452 CRYST1 82.530 106.370 135.870 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012117 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009401 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007360 0.00000