HEADER LIPID BINDING PROTEIN 01-OCT-14 4RH8 TITLE CRYSTAL STRUCTURE OF THE OUTER MEMBRANE LIPOPOLYSACCHARIDE TRANSPORT TITLE 2 PROTEIN LPTE (RLPB) FROM ESCHERICHIA COLI IN THE TETRAGONAL CRYSTAL TITLE 3 FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: LPS-ASSEMBLY LIPOPROTEIN LPTE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: RARE LIPOPROTEIN B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: LPTE, RLPB, B0641, JW0636; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS 2-LAYER SANDWICH, LIPOPOLYSACCHARIDE ASSEMBLY, LPTD (IMP), GRAM- KEYWDS 2 NEGATIVE OUTER MEMBRANE, LIPID BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.MALOJCIC,D.KAHNE REVDAT 2 20-SEP-23 4RH8 1 REMARK SEQADV REVDAT 1 11-NOV-15 4RH8 0 JRNL AUTH G.MALOJCIC,D.KAHNE JRNL TITL STRUCTURAL BASIS OF LIPOPOLYSACCHARIDE INSERTION INTO THE JRNL TITL 2 BACTERIAL OUTER MEMBRANE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 87.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 43543 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2260 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3114 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.3440 REMARK 3 BIN FREE R VALUE SET COUNT : 192 REMARK 3 BIN FREE R VALUE : 0.3860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4195 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 169 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.83000 REMARK 3 B22 (A**2) : -0.83000 REMARK 3 B33 (A**2) : 1.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.207 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.186 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.163 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.832 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4252 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4269 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5719 ; 1.998 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9803 ; 1.600 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 526 ; 8.151 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 189 ;34.641 ;23.439 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 813 ;18.416 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;20.042 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 666 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4713 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 911 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2128 ; 5.168 ; 5.394 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2129 ; 5.168 ; 5.395 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2646 ; 7.479 ; 8.046 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2647 ; 7.727 ; 8.068 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2124 ; 6.855 ; 6.296 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2114 ; 6.844 ; 6.312 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3074 ;10.075 ; 9.138 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4603 ;12.845 ;43.125 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4544 ;12.868 ;43.020 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 28 170 B 28 170 7717 0.11 0.05 REMARK 3 2 A 28 170 C 28 170 7531 0.12 0.05 REMARK 3 3 A 28 170 D 28 170 7603 0.13 0.05 REMARK 3 4 B 28 170 C 28 170 7464 0.13 0.05 REMARK 3 5 B 28 170 D 28 170 7538 0.14 0.05 REMARK 3 6 C 28 170 D 28 170 7606 0.12 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RH8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087343. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45803 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 200.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.600 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4NHR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M SODIUM FORMATE, 0.1 M TRIS/HOAC REMARK 280 PH 8.50, 15% PEG4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.42000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.23000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.23000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.71000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.23000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.23000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 125.13000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.23000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.23000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.71000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.23000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.23000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 125.13000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 83.42000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 328 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 19 REMARK 465 GLY A 20 REMARK 465 TRP A 21 REMARK 465 HIS A 22 REMARK 465 LEU A 23 REMARK 465 ARG A 24 REMARK 465 ASP A 25 REMARK 465 THR A 26 REMARK 465 THR A 27 REMARK 465 ASN A 129 REMARK 465 PRO A 130 REMARK 465 GLN A 131 REMARK 465 MET A 132 REMARK 465 ALA A 133 REMARK 465 LEU A 134 REMARK 465 ALA A 135 REMARK 465 LYS A 136 REMARK 465 ASP A 137 REMARK 465 ASN A 138 REMARK 465 GLU A 171 REMARK 465 GLU A 172 REMARK 465 GLN A 173 REMARK 465 THR A 174 REMARK 465 SER A 175 REMARK 465 THR A 176 REMARK 465 THR A 177 REMARK 465 THR A 178 REMARK 465 ASP A 179 REMARK 465 THR A 180 REMARK 465 PRO A 181 REMARK 465 ALA A 182 REMARK 465 LEU A 183 REMARK 465 VAL A 184 REMARK 465 PRO A 185 REMARK 465 ARG A 186 REMARK 465 MET B 19 REMARK 465 GLY B 20 REMARK 465 TRP B 21 REMARK 465 HIS B 22 REMARK 465 LEU B 23 REMARK 465 ARG B 24 REMARK 465 ASP B 25 REMARK 465 THR B 26 REMARK 465 THR B 27 REMARK 465 ASN B 129 REMARK 465 PRO B 130 REMARK 465 GLN B 131 REMARK 465 MET B 132 REMARK 465 ALA B 133 REMARK 465 LEU B 134 REMARK 465 ALA B 135 REMARK 465 LYS B 136 REMARK 465 ASP B 137 REMARK 465 ASN B 138 REMARK 465 GLU B 171 REMARK 465 GLU B 172 REMARK 465 GLN B 173 REMARK 465 THR B 174 REMARK 465 SER B 175 REMARK 465 THR B 176 REMARK 465 THR B 177 REMARK 465 THR B 178 REMARK 465 ASP B 179 REMARK 465 THR B 180 REMARK 465 PRO B 181 REMARK 465 ALA B 182 REMARK 465 LEU B 183 REMARK 465 VAL B 184 REMARK 465 PRO B 185 REMARK 465 ARG B 186 REMARK 465 MET C 19 REMARK 465 GLY C 20 REMARK 465 TRP C 21 REMARK 465 HIS C 22 REMARK 465 LEU C 23 REMARK 465 ARG C 24 REMARK 465 ASP C 25 REMARK 465 THR C 26 REMARK 465 THR C 27 REMARK 465 GLN C 131 REMARK 465 MET C 132 REMARK 465 ALA C 133 REMARK 465 LEU C 134 REMARK 465 ALA C 135 REMARK 465 LYS C 136 REMARK 465 ASP C 137 REMARK 465 ASN C 138 REMARK 465 GLU C 171 REMARK 465 GLU C 172 REMARK 465 GLN C 173 REMARK 465 THR C 174 REMARK 465 SER C 175 REMARK 465 THR C 176 REMARK 465 THR C 177 REMARK 465 THR C 178 REMARK 465 ASP C 179 REMARK 465 THR C 180 REMARK 465 PRO C 181 REMARK 465 ALA C 182 REMARK 465 LEU C 183 REMARK 465 VAL C 184 REMARK 465 PRO C 185 REMARK 465 ARG C 186 REMARK 465 MET D 19 REMARK 465 GLY D 20 REMARK 465 TRP D 21 REMARK 465 HIS D 22 REMARK 465 LEU D 23 REMARK 465 ARG D 24 REMARK 465 ASP D 25 REMARK 465 THR D 26 REMARK 465 THR D 27 REMARK 465 ASN D 129 REMARK 465 PRO D 130 REMARK 465 GLN D 131 REMARK 465 MET D 132 REMARK 465 ALA D 133 REMARK 465 LEU D 134 REMARK 465 ALA D 135 REMARK 465 LYS D 136 REMARK 465 ASP D 137 REMARK 465 ASN D 138 REMARK 465 GLU D 171 REMARK 465 GLU D 172 REMARK 465 GLN D 173 REMARK 465 THR D 174 REMARK 465 SER D 175 REMARK 465 THR D 176 REMARK 465 THR D 177 REMARK 465 THR D 178 REMARK 465 ASP D 179 REMARK 465 THR D 180 REMARK 465 PRO D 181 REMARK 465 ALA D 182 REMARK 465 LEU D 183 REMARK 465 VAL D 184 REMARK 465 PRO D 185 REMARK 465 ARG D 186 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 320 O HOH D 301 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 36 CG - SD - CE ANGL. DEV. = -15.3 DEGREES REMARK 500 THR A 107 N - CA - CB ANGL. DEV. = -13.5 DEGREES REMARK 500 ARG A 124 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 150 CG - CD - NE ANGL. DEV. = -14.9 DEGREES REMARK 500 MET B 36 CA - CB - CG ANGL. DEV. = 11.2 DEGREES REMARK 500 ARG B 69 CG - CD - NE ANGL. DEV. = 15.9 DEGREES REMARK 500 ARG B 69 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 124 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 150 CG - CD - NE ANGL. DEV. = -14.0 DEGREES REMARK 500 ARG C 124 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG D 124 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 113 -71.61 -119.65 REMARK 500 PHE A 127 77.08 13.79 REMARK 500 ASP B 42 87.85 -150.58 REMARK 500 ARG B 113 -69.72 -120.55 REMARK 500 LYS C 70 68.04 -108.43 REMARK 500 ASN C 92 101.29 66.70 REMARK 500 ARG C 113 -148.54 -123.66 REMARK 500 ASP D 71 10.81 55.02 REMARK 500 ASN D 92 100.27 70.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 91 ASN A 92 30.66 REMARK 500 ASN A 92 GLY A 93 -139.11 REMARK 500 PHE A 126 PHE A 127 46.71 REMARK 500 ASN B 92 GLY B 93 -135.79 REMARK 500 PHE B 126 PHE B 127 145.82 REMARK 500 GLU C 66 THR C 67 -146.84 REMARK 500 THR C 68 ARG C 69 -148.43 REMARK 500 ARG C 91 ASN C 92 -137.85 REMARK 500 ASN C 92 GLY C 93 -135.54 REMARK 500 ARG D 91 ASN D 92 -140.17 REMARK 500 ASN D 92 GLY D 93 -139.14 REMARK 500 PHE D 127 ASP D 128 130.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT D 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NHR RELATED DB: PDB REMARK 900 RELATED ID: 4RHB RELATED DB: PDB DBREF 4RH8 A 19 186 UNP P0ADC1 LPTE_ECOLI 19 186 DBREF 4RH8 B 19 186 UNP P0ADC1 LPTE_ECOLI 19 186 DBREF 4RH8 C 19 186 UNP P0ADC1 LPTE_ECOLI 19 186 DBREF 4RH8 D 19 186 UNP P0ADC1 LPTE_ECOLI 19 186 SEQADV 4RH8 MET A 19 UNP P0ADC1 CYS 19 CONFLICT SEQADV 4RH8 LEU A 183 UNP P0ADC1 THR 183 ENGINEERED MUTATION SEQADV 4RH8 VAL A 184 UNP P0ADC1 PRO 184 ENGINEERED MUTATION SEQADV 4RH8 PRO A 185 UNP P0ADC1 ALA 185 ENGINEERED MUTATION SEQADV 4RH8 MET B 19 UNP P0ADC1 CYS 19 CONFLICT SEQADV 4RH8 LEU B 183 UNP P0ADC1 THR 183 ENGINEERED MUTATION SEQADV 4RH8 VAL B 184 UNP P0ADC1 PRO 184 ENGINEERED MUTATION SEQADV 4RH8 PRO B 185 UNP P0ADC1 ALA 185 ENGINEERED MUTATION SEQADV 4RH8 MET C 19 UNP P0ADC1 CYS 19 CONFLICT SEQADV 4RH8 LEU C 183 UNP P0ADC1 THR 183 ENGINEERED MUTATION SEQADV 4RH8 VAL C 184 UNP P0ADC1 PRO 184 ENGINEERED MUTATION SEQADV 4RH8 PRO C 185 UNP P0ADC1 ALA 185 ENGINEERED MUTATION SEQADV 4RH8 MET D 19 UNP P0ADC1 CYS 19 CONFLICT SEQADV 4RH8 LEU D 183 UNP P0ADC1 THR 183 ENGINEERED MUTATION SEQADV 4RH8 VAL D 184 UNP P0ADC1 PRO 184 ENGINEERED MUTATION SEQADV 4RH8 PRO D 185 UNP P0ADC1 ALA 185 ENGINEERED MUTATION SEQRES 1 A 168 MET GLY TRP HIS LEU ARG ASP THR THR GLN VAL PRO SER SEQRES 2 A 168 THR MET LYS VAL MET ILE LEU ASP SER GLY ASP PRO ASN SEQRES 3 A 168 GLY PRO LEU SER ARG ALA VAL ARG ASN GLN LEU ARG LEU SEQRES 4 A 168 ASN GLY VAL GLU LEU LEU ASP LYS GLU THR THR ARG LYS SEQRES 5 A 168 ASP VAL PRO SER LEU ARG LEU GLY LYS VAL SER ILE ALA SEQRES 6 A 168 LYS ASP THR ALA SER VAL PHE ARG ASN GLY GLN THR ALA SEQRES 7 A 168 GLU TYR GLN MET ILE MET THR VAL ASN ALA THR VAL LEU SEQRES 8 A 168 ILE PRO GLY ARG ASP ILE TYR PRO ILE SER ALA LYS VAL SEQRES 9 A 168 PHE ARG SER PHE PHE ASP ASN PRO GLN MET ALA LEU ALA SEQRES 10 A 168 LYS ASP ASN GLU GLN ASP MET ILE VAL LYS GLU MET TYR SEQRES 11 A 168 ASP ARG ALA ALA GLU GLN LEU ILE ARG LYS LEU PRO SER SEQRES 12 A 168 ILE ARG ALA ALA ASP ILE ARG SER ASP GLU GLU GLN THR SEQRES 13 A 168 SER THR THR THR ASP THR PRO ALA LEU VAL PRO ARG SEQRES 1 B 168 MET GLY TRP HIS LEU ARG ASP THR THR GLN VAL PRO SER SEQRES 2 B 168 THR MET LYS VAL MET ILE LEU ASP SER GLY ASP PRO ASN SEQRES 3 B 168 GLY PRO LEU SER ARG ALA VAL ARG ASN GLN LEU ARG LEU SEQRES 4 B 168 ASN GLY VAL GLU LEU LEU ASP LYS GLU THR THR ARG LYS SEQRES 5 B 168 ASP VAL PRO SER LEU ARG LEU GLY LYS VAL SER ILE ALA SEQRES 6 B 168 LYS ASP THR ALA SER VAL PHE ARG ASN GLY GLN THR ALA SEQRES 7 B 168 GLU TYR GLN MET ILE MET THR VAL ASN ALA THR VAL LEU SEQRES 8 B 168 ILE PRO GLY ARG ASP ILE TYR PRO ILE SER ALA LYS VAL SEQRES 9 B 168 PHE ARG SER PHE PHE ASP ASN PRO GLN MET ALA LEU ALA SEQRES 10 B 168 LYS ASP ASN GLU GLN ASP MET ILE VAL LYS GLU MET TYR SEQRES 11 B 168 ASP ARG ALA ALA GLU GLN LEU ILE ARG LYS LEU PRO SER SEQRES 12 B 168 ILE ARG ALA ALA ASP ILE ARG SER ASP GLU GLU GLN THR SEQRES 13 B 168 SER THR THR THR ASP THR PRO ALA LEU VAL PRO ARG SEQRES 1 C 168 MET GLY TRP HIS LEU ARG ASP THR THR GLN VAL PRO SER SEQRES 2 C 168 THR MET LYS VAL MET ILE LEU ASP SER GLY ASP PRO ASN SEQRES 3 C 168 GLY PRO LEU SER ARG ALA VAL ARG ASN GLN LEU ARG LEU SEQRES 4 C 168 ASN GLY VAL GLU LEU LEU ASP LYS GLU THR THR ARG LYS SEQRES 5 C 168 ASP VAL PRO SER LEU ARG LEU GLY LYS VAL SER ILE ALA SEQRES 6 C 168 LYS ASP THR ALA SER VAL PHE ARG ASN GLY GLN THR ALA SEQRES 7 C 168 GLU TYR GLN MET ILE MET THR VAL ASN ALA THR VAL LEU SEQRES 8 C 168 ILE PRO GLY ARG ASP ILE TYR PRO ILE SER ALA LYS VAL SEQRES 9 C 168 PHE ARG SER PHE PHE ASP ASN PRO GLN MET ALA LEU ALA SEQRES 10 C 168 LYS ASP ASN GLU GLN ASP MET ILE VAL LYS GLU MET TYR SEQRES 11 C 168 ASP ARG ALA ALA GLU GLN LEU ILE ARG LYS LEU PRO SER SEQRES 12 C 168 ILE ARG ALA ALA ASP ILE ARG SER ASP GLU GLU GLN THR SEQRES 13 C 168 SER THR THR THR ASP THR PRO ALA LEU VAL PRO ARG SEQRES 1 D 168 MET GLY TRP HIS LEU ARG ASP THR THR GLN VAL PRO SER SEQRES 2 D 168 THR MET LYS VAL MET ILE LEU ASP SER GLY ASP PRO ASN SEQRES 3 D 168 GLY PRO LEU SER ARG ALA VAL ARG ASN GLN LEU ARG LEU SEQRES 4 D 168 ASN GLY VAL GLU LEU LEU ASP LYS GLU THR THR ARG LYS SEQRES 5 D 168 ASP VAL PRO SER LEU ARG LEU GLY LYS VAL SER ILE ALA SEQRES 6 D 168 LYS ASP THR ALA SER VAL PHE ARG ASN GLY GLN THR ALA SEQRES 7 D 168 GLU TYR GLN MET ILE MET THR VAL ASN ALA THR VAL LEU SEQRES 8 D 168 ILE PRO GLY ARG ASP ILE TYR PRO ILE SER ALA LYS VAL SEQRES 9 D 168 PHE ARG SER PHE PHE ASP ASN PRO GLN MET ALA LEU ALA SEQRES 10 D 168 LYS ASP ASN GLU GLN ASP MET ILE VAL LYS GLU MET TYR SEQRES 11 D 168 ASP ARG ALA ALA GLU GLN LEU ILE ARG LYS LEU PRO SER SEQRES 12 D 168 ILE ARG ALA ALA ASP ILE ARG SER ASP GLU GLU GLN THR SEQRES 13 D 168 SER THR THR THR ASP THR PRO ALA LEU VAL PRO ARG HET FMT A 201 3 HET FMT B 201 3 HET FMT C 201 3 HET FMT D 201 3 HETNAM FMT FORMIC ACID FORMUL 5 FMT 4(C H2 O2) FORMUL 9 HOH *169(H2 O) HELIX 1 1 PRO A 30 MET A 33 5 4 HELIX 2 2 GLY A 45 ASN A 58 1 14 HELIX 3 3 GLN A 140 ARG A 157 1 18 HELIX 4 4 LYS A 158 SER A 169 1 12 HELIX 5 5 PRO B 30 MET B 33 5 4 HELIX 6 6 GLY B 45 ASN B 58 1 14 HELIX 7 7 GLN B 140 ARG B 157 1 18 HELIX 8 8 LYS B 158 SER B 169 1 12 HELIX 9 9 PRO C 30 MET C 33 5 4 HELIX 10 10 GLY C 45 ASN C 58 1 14 HELIX 11 11 GLN C 140 ARG C 157 1 18 HELIX 12 12 LYS C 158 SER C 169 1 12 HELIX 13 13 PRO D 30 MET D 33 5 4 HELIX 14 14 GLY D 45 ASN D 58 1 14 HELIX 15 15 GLN D 140 ARG D 157 1 18 HELIX 16 16 LYS D 158 SER D 169 1 12 SHEET 1 A 6 GLU A 61 LEU A 63 0 SHEET 2 A 6 VAL A 35 SER A 40 1 N MET A 36 O GLU A 61 SHEET 3 A 6 SER A 74 PHE A 90 1 O LEU A 75 N ILE A 37 SHEET 4 A 6 SER C 74 PHE C 90 -1 O GLY C 78 N PHE A 90 SHEET 5 A 6 VAL C 35 SER C 40 1 N ILE C 37 O LEU C 75 SHEET 6 A 6 GLU C 61 LEU C 63 1 O GLU C 61 N MET C 36 SHEET 1 B 6 ASP A 114 PHE A 126 0 SHEET 2 B 6 GLN A 94 ILE A 110 -1 N ALA A 106 O ILE A 118 SHEET 3 B 6 SER A 74 PHE A 90 -1 N ALA A 83 O ILE A 101 SHEET 4 B 6 SER C 74 PHE C 90 -1 O GLY C 78 N PHE A 90 SHEET 5 B 6 GLN C 94 LEU C 109 -1 O ILE C 101 N ALA C 83 SHEET 6 B 6 ILE C 115 PHE C 126 -1 O VAL C 122 N MET C 102 SHEET 1 C 6 GLU B 61 LEU B 63 0 SHEET 2 C 6 VAL B 35 SER B 40 1 N MET B 36 O GLU B 61 SHEET 3 C 6 SER B 74 PHE B 90 1 O LEU B 75 N ILE B 37 SHEET 4 C 6 SER D 74 PHE D 90 -1 O GLY D 78 N PHE B 90 SHEET 5 C 6 VAL D 35 SER D 40 1 N ILE D 37 O LEU D 75 SHEET 6 C 6 GLU D 61 LEU D 63 1 O GLU D 61 N MET D 36 SHEET 1 D 6 ASP B 114 PHE B 126 0 SHEET 2 D 6 GLN B 94 ILE B 110 -1 N TYR B 98 O PHE B 126 SHEET 3 D 6 SER B 74 PHE B 90 -1 N ALA B 83 O ILE B 101 SHEET 4 D 6 SER D 74 PHE D 90 -1 O GLY D 78 N PHE B 90 SHEET 5 D 6 GLN D 94 ILE D 110 -1 O ILE D 101 N ALA D 83 SHEET 6 D 6 ASP D 114 PHE D 126 -1 O VAL D 122 N MET D 102 CISPEP 1 ARG B 91 ASN B 92 0 29.40 SITE 1 AC1 5 GLY A 41 LEU A 77 SER C 88 PHE C 90 SITE 2 AC1 5 GLN C 94 SITE 1 AC2 4 GLY B 41 LEU B 77 PHE D 90 GLN D 94 SITE 1 AC3 4 PHE A 90 GLN A 94 GLY C 41 LEU C 77 SITE 1 AC4 4 PHE B 90 GLN B 94 GLY D 41 LEU D 77 CRYST1 102.460 102.460 166.840 90.00 90.00 90.00 P 41 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009760 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009760 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005994 0.00000