HEADER SUGAR BINDING PROTEIN 02-OCT-14 4RHS TITLE CRYSTAL STRUCTURE OF GD2 BOUND PLTB COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PERTUSSIS-LIKE TOXIN SUBUNIT; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 FRAGMENT: UNP RESIDUE 24-137; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHI; SOURCE 4 ORGANISM_TAXID: 90370; SOURCE 5 GENE: STY1891, T1107; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28A KEYWDS SUGAR BINDING MOTIF, SUGAR BINDING, SUGAR, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.GAO,J.WANG,J.GALAN REVDAT 3 29-JUL-20 4RHS 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 17-DEC-14 4RHS 1 JRNL REVDAT 1 29-OCT-14 4RHS 0 JRNL AUTH L.DENG,J.SONG,X.GAO,J.WANG,H.YU,X.CHEN,N.VARKI, JRNL AUTH 2 Y.NAITO-MATSUI,J.E.GALAN,A.VARKI JRNL TITL HOST ADAPTATION OF A BACTERIAL TOXIN FROM THE HUMAN PATHOGEN JRNL TITL 2 SALMONELLA TYPHI. JRNL REF CELL(CAMBRIDGE,MASS.) V. 159 1290 2014 JRNL REFN ISSN 0092-8674 JRNL PMID 25480294 JRNL DOI 10.1016/J.CELL.2014.10.057 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1701) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 50854 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2571 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.0488 - 5.0233 0.99 2970 168 0.1548 0.1632 REMARK 3 2 5.0233 - 3.9917 0.99 2827 147 0.1223 0.1431 REMARK 3 3 3.9917 - 3.4885 0.98 2793 153 0.1487 0.1585 REMARK 3 4 3.4885 - 3.1702 0.98 2802 136 0.1575 0.2013 REMARK 3 5 3.1702 - 2.9433 0.97 2713 133 0.1819 0.2420 REMARK 3 6 2.9433 - 2.7699 0.93 2579 158 0.2137 0.2234 REMARK 3 7 2.7699 - 2.6314 0.96 2667 141 0.1995 0.2393 REMARK 3 8 2.6314 - 2.5169 0.96 2707 126 0.1883 0.2620 REMARK 3 9 2.5169 - 2.4201 0.96 2642 151 0.1909 0.2152 REMARK 3 10 2.4201 - 2.3366 0.96 2709 137 0.1880 0.2096 REMARK 3 11 2.3366 - 2.2636 0.94 2581 150 0.2112 0.2891 REMARK 3 12 2.2636 - 2.1989 0.96 2672 136 0.2472 0.3190 REMARK 3 13 2.1989 - 2.1411 0.95 2640 137 0.1967 0.2130 REMARK 3 14 2.1411 - 2.0889 0.94 2611 143 0.1864 0.2293 REMARK 3 15 2.0889 - 2.0414 0.95 2624 135 0.2005 0.2372 REMARK 3 16 2.0414 - 1.9980 0.94 2610 125 0.2078 0.2262 REMARK 3 17 1.9980 - 1.9580 0.94 2631 145 0.2455 0.2906 REMARK 3 18 1.9580 - 1.9211 0.92 2505 150 0.2816 0.3524 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4674 REMARK 3 ANGLE : 1.162 6367 REMARK 3 CHIRALITY : 0.043 721 REMARK 3 PLANARITY : 0.006 796 REMARK 3 DIHEDRAL : 12.386 1583 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 1:150 REMARK 3 ORIGIN FOR THE GROUP (A): 4.4085 17.2856 -9.9449 REMARK 3 T TENSOR REMARK 3 T11: 0.1620 T22: 0.1742 REMARK 3 T33: 0.1868 T12: 0.0156 REMARK 3 T13: -0.0032 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.0079 L22: 2.0805 REMARK 3 L33: 1.4789 L12: -0.0873 REMARK 3 L13: 0.1547 L23: 0.3102 REMARK 3 S TENSOR REMARK 3 S11: 0.0017 S12: 0.0090 S13: -0.1538 REMARK 3 S21: 0.0192 S22: 0.0002 S23: -0.2292 REMARK 3 S31: 0.0898 S32: 0.1143 S33: 0.0024 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND RESID 1:150 REMARK 3 ORIGIN FOR THE GROUP (A): 0.9545 40.5381 -10.8067 REMARK 3 T TENSOR REMARK 3 T11: 0.2020 T22: 0.1777 REMARK 3 T33: 0.1879 T12: -0.0238 REMARK 3 T13: -0.0080 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 1.6023 L22: 1.8641 REMARK 3 L33: 1.1552 L12: -0.6416 REMARK 3 L13: 0.3306 L23: -0.5338 REMARK 3 S TENSOR REMARK 3 S11: -0.0145 S12: 0.0463 S13: 0.1457 REMARK 3 S21: 0.1175 S22: 0.0464 S23: -0.2134 REMARK 3 S31: -0.1128 S32: 0.0407 S33: -0.0432 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C AND RESID 1:150 REMARK 3 ORIGIN FOR THE GROUP (A): -15.1032 6.5640 -17.7686 REMARK 3 T TENSOR REMARK 3 T11: 0.2211 T22: 0.1972 REMARK 3 T33: 0.2716 T12: -0.0281 REMARK 3 T13: 0.0398 T23: -0.0781 REMARK 3 L TENSOR REMARK 3 L11: 1.7621 L22: 1.8877 REMARK 3 L33: 1.6718 L12: -0.3340 REMARK 3 L13: -0.5595 L23: 0.4965 REMARK 3 S TENSOR REMARK 3 S11: -0.0875 S12: 0.1037 S13: -0.3235 REMARK 3 S21: -0.0454 S22: -0.0229 S23: 0.2632 REMARK 3 S31: 0.1760 S32: -0.1942 S33: 0.0800 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D AND RESID 1:150 REMARK 3 ORIGIN FOR THE GROUP (A): -30.8387 23.1024 -23.4636 REMARK 3 T TENSOR REMARK 3 T11: 0.1986 T22: 0.3763 REMARK 3 T33: 0.3296 T12: -0.0116 REMARK 3 T13: -0.0060 T23: -0.0760 REMARK 3 L TENSOR REMARK 3 L11: 1.8899 L22: 2.4585 REMARK 3 L33: 1.7823 L12: -0.2115 REMARK 3 L13: 0.5106 L23: 0.1458 REMARK 3 S TENSOR REMARK 3 S11: -0.0112 S12: 0.4089 S13: -0.1147 REMARK 3 S21: -0.1760 S22: -0.0866 S23: 0.4851 REMARK 3 S31: -0.0155 S32: -0.2320 S33: 0.0717 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN E AND RESID 1:150 REMARK 3 ORIGIN FOR THE GROUP (A): -21.0462 44.3087 -19.0937 REMARK 3 T TENSOR REMARK 3 T11: 0.2154 T22: 0.2288 REMARK 3 T33: 0.2553 T12: 0.0266 REMARK 3 T13: 0.0098 T23: 0.0712 REMARK 3 L TENSOR REMARK 3 L11: 2.4036 L22: 2.3203 REMARK 3 L33: 1.2814 L12: 0.6914 REMARK 3 L13: -0.0955 L23: -0.1420 REMARK 3 S TENSOR REMARK 3 S11: -0.0231 S12: 0.2181 S13: 0.2930 REMARK 3 S21: -0.1201 S22: 0.0917 S23: 0.3164 REMARK 3 S31: -0.1557 S32: -0.1987 S33: -0.0490 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RHS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087362. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51223 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 26.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% (W/V) PEG1500 AND 0.1 M SODIUM REMARK 280 ACETATE, PH5.0 SOAKED WITH GD2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.12850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.00100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.37550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.00100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.12850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.37550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 138 REMARK 465 GLU A 139 REMARK 465 HIS A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 GLU B 139 REMARK 465 HIS B 140 REMARK 465 HIS B 141 REMARK 465 HIS B 142 REMARK 465 HIS B 143 REMARK 465 HIS B 144 REMARK 465 HIS B 145 REMARK 465 LEU C 138 REMARK 465 GLU C 139 REMARK 465 HIS C 140 REMARK 465 HIS C 141 REMARK 465 HIS C 142 REMARK 465 HIS C 143 REMARK 465 HIS C 144 REMARK 465 HIS C 145 REMARK 465 LEU D 138 REMARK 465 GLU D 139 REMARK 465 HIS D 140 REMARK 465 HIS D 141 REMARK 465 HIS D 142 REMARK 465 HIS D 143 REMARK 465 HIS D 144 REMARK 465 HIS D 145 REMARK 465 LEU E 138 REMARK 465 GLU E 139 REMARK 465 HIS E 140 REMARK 465 HIS E 141 REMARK 465 HIS E 142 REMARK 465 HIS E 143 REMARK 465 HIS E 144 REMARK 465 HIS E 145 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 138 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 298 O HOH A 302 1.85 REMARK 500 O HOH D 248 O HOH E 366 1.87 REMARK 500 O HOH A 267 O HOH A 290 1.91 REMARK 500 O HOH B 394 O HOH E 368 1.96 REMARK 500 O HOH B 394 O HOH E 367 2.04 REMARK 500 O HOH D 246 O HOH D 247 2.04 REMARK 500 O HOH A 274 O HOH B 368 2.06 REMARK 500 OG SER D 50 O SER D 73 2.07 REMARK 500 O HOH E 322 O HOH E 346 2.08 REMARK 500 O HOH B 319 O HOH B 403 2.08 REMARK 500 O HOH B 363 O HOH B 364 2.12 REMARK 500 O8 SIA F 2 C3 SIA F 3 2.12 REMARK 500 O HOH A 272 O HOH A 278 2.14 REMARK 500 O HOH C 358 O HOH D 233 2.14 REMARK 500 O HOH D 225 O HOH D 228 2.14 REMARK 500 O HOH D 223 O HOH D 226 2.14 REMARK 500 O HOH A 236 O HOH A 246 2.15 REMARK 500 O HOH E 370 O HOH E 371 2.16 REMARK 500 O HOH B 385 O HOH B 388 2.16 REMARK 500 O HOH D 245 O HOH D 255 2.18 REMARK 500 O CYS A 128 O HOH A 218 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 239 O HOH B 330 3544 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 76 162.33 72.11 REMARK 500 PHE A 117 -99.49 -115.03 REMARK 500 SER B 76 168.09 72.27 REMARK 500 PHE B 117 -99.23 -119.22 REMARK 500 SER B 129 -169.91 -103.08 REMARK 500 THR C 49 -3.58 82.40 REMARK 500 SER C 63 -167.97 -75.56 REMARK 500 SER C 76 166.09 77.56 REMARK 500 PHE C 117 -103.01 -115.71 REMARK 500 ALA C 130 -69.32 -104.92 REMARK 500 GLN C 132 -160.37 -176.70 REMARK 500 LYS D 74 -4.35 67.34 REMARK 500 SER D 76 168.07 70.16 REMARK 500 PHE D 117 -110.57 -112.84 REMARK 500 SER E 76 165.16 76.15 REMARK 500 PHE E 117 -100.36 -118.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4K6L RELATED DB: PDB REMARK 900 B SUBUNIT OF TYPHOID TOXIN REMARK 900 RELATED ID: 4RHR RELATED DB: PDB REMARK 900 GD2 BOUND PLTB DBREF 4RHS A 24 137 UNP Q8Z6A3 Q8Z6A3_SALTI 24 137 DBREF 4RHS B 24 137 UNP Q8Z6A3 Q8Z6A3_SALTI 24 137 DBREF 4RHS C 24 137 UNP Q8Z6A3 Q8Z6A3_SALTI 24 137 DBREF 4RHS D 24 137 UNP Q8Z6A3 Q8Z6A3_SALTI 24 137 DBREF 4RHS E 24 137 UNP Q8Z6A3 Q8Z6A3_SALTI 24 137 SEQADV 4RHS LEU A 138 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS GLU A 139 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS HIS A 140 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS HIS A 141 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS HIS A 142 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS HIS A 143 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS HIS A 144 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS HIS A 145 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS LEU B 138 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS GLU B 139 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS HIS B 140 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS HIS B 141 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS HIS B 142 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS HIS B 143 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS HIS B 144 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS HIS B 145 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS LEU C 138 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS GLU C 139 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS HIS C 140 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS HIS C 141 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS HIS C 142 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS HIS C 143 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS HIS C 144 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS HIS C 145 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS LEU D 138 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS GLU D 139 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS HIS D 140 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS HIS D 141 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS HIS D 142 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS HIS D 143 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS HIS D 144 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS HIS D 145 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS LEU E 138 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS GLU E 139 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS HIS E 140 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS HIS E 141 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS HIS E 142 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS HIS E 143 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS HIS E 144 UNP Q8Z6A3 EXPRESSION TAG SEQADV 4RHS HIS E 145 UNP Q8Z6A3 EXPRESSION TAG SEQRES 1 A 122 GLU TRP THR GLY ASP ASN THR ASN ALA TYR TYR SER ASP SEQRES 2 A 122 GLU VAL ILE SER GLU LEU HIS VAL GLY GLN ILE ASP THR SEQRES 3 A 122 SER PRO TYR PHE CYS ILE LYS THR VAL LYS ALA ASN GLY SEQRES 4 A 122 SER GLY THR PRO VAL VAL ALA CYS ALA VAL SER LYS GLN SEQRES 5 A 122 SER ILE TRP ALA PRO SER PHE LYS GLU LEU LEU ASP GLN SEQRES 6 A 122 ALA ARG TYR PHE TYR SER THR GLY GLN SER VAL ARG ILE SEQRES 7 A 122 HIS VAL GLN LYS ASN ILE TRP THR TYR PRO LEU PHE VAL SEQRES 8 A 122 ASN THR PHE SER ALA ASN ALA LEU VAL GLY LEU SER SER SEQRES 9 A 122 CYS SER ALA THR GLN CYS PHE GLY PRO LYS LEU GLU HIS SEQRES 10 A 122 HIS HIS HIS HIS HIS SEQRES 1 B 122 GLU TRP THR GLY ASP ASN THR ASN ALA TYR TYR SER ASP SEQRES 2 B 122 GLU VAL ILE SER GLU LEU HIS VAL GLY GLN ILE ASP THR SEQRES 3 B 122 SER PRO TYR PHE CYS ILE LYS THR VAL LYS ALA ASN GLY SEQRES 4 B 122 SER GLY THR PRO VAL VAL ALA CYS ALA VAL SER LYS GLN SEQRES 5 B 122 SER ILE TRP ALA PRO SER PHE LYS GLU LEU LEU ASP GLN SEQRES 6 B 122 ALA ARG TYR PHE TYR SER THR GLY GLN SER VAL ARG ILE SEQRES 7 B 122 HIS VAL GLN LYS ASN ILE TRP THR TYR PRO LEU PHE VAL SEQRES 8 B 122 ASN THR PHE SER ALA ASN ALA LEU VAL GLY LEU SER SER SEQRES 9 B 122 CYS SER ALA THR GLN CYS PHE GLY PRO LYS LEU GLU HIS SEQRES 10 B 122 HIS HIS HIS HIS HIS SEQRES 1 C 122 GLU TRP THR GLY ASP ASN THR ASN ALA TYR TYR SER ASP SEQRES 2 C 122 GLU VAL ILE SER GLU LEU HIS VAL GLY GLN ILE ASP THR SEQRES 3 C 122 SER PRO TYR PHE CYS ILE LYS THR VAL LYS ALA ASN GLY SEQRES 4 C 122 SER GLY THR PRO VAL VAL ALA CYS ALA VAL SER LYS GLN SEQRES 5 C 122 SER ILE TRP ALA PRO SER PHE LYS GLU LEU LEU ASP GLN SEQRES 6 C 122 ALA ARG TYR PHE TYR SER THR GLY GLN SER VAL ARG ILE SEQRES 7 C 122 HIS VAL GLN LYS ASN ILE TRP THR TYR PRO LEU PHE VAL SEQRES 8 C 122 ASN THR PHE SER ALA ASN ALA LEU VAL GLY LEU SER SER SEQRES 9 C 122 CYS SER ALA THR GLN CYS PHE GLY PRO LYS LEU GLU HIS SEQRES 10 C 122 HIS HIS HIS HIS HIS SEQRES 1 D 122 GLU TRP THR GLY ASP ASN THR ASN ALA TYR TYR SER ASP SEQRES 2 D 122 GLU VAL ILE SER GLU LEU HIS VAL GLY GLN ILE ASP THR SEQRES 3 D 122 SER PRO TYR PHE CYS ILE LYS THR VAL LYS ALA ASN GLY SEQRES 4 D 122 SER GLY THR PRO VAL VAL ALA CYS ALA VAL SER LYS GLN SEQRES 5 D 122 SER ILE TRP ALA PRO SER PHE LYS GLU LEU LEU ASP GLN SEQRES 6 D 122 ALA ARG TYR PHE TYR SER THR GLY GLN SER VAL ARG ILE SEQRES 7 D 122 HIS VAL GLN LYS ASN ILE TRP THR TYR PRO LEU PHE VAL SEQRES 8 D 122 ASN THR PHE SER ALA ASN ALA LEU VAL GLY LEU SER SER SEQRES 9 D 122 CYS SER ALA THR GLN CYS PHE GLY PRO LYS LEU GLU HIS SEQRES 10 D 122 HIS HIS HIS HIS HIS SEQRES 1 E 122 GLU TRP THR GLY ASP ASN THR ASN ALA TYR TYR SER ASP SEQRES 2 E 122 GLU VAL ILE SER GLU LEU HIS VAL GLY GLN ILE ASP THR SEQRES 3 E 122 SER PRO TYR PHE CYS ILE LYS THR VAL LYS ALA ASN GLY SEQRES 4 E 122 SER GLY THR PRO VAL VAL ALA CYS ALA VAL SER LYS GLN SEQRES 5 E 122 SER ILE TRP ALA PRO SER PHE LYS GLU LEU LEU ASP GLN SEQRES 6 E 122 ALA ARG TYR PHE TYR SER THR GLY GLN SER VAL ARG ILE SEQRES 7 E 122 HIS VAL GLN LYS ASN ILE TRP THR TYR PRO LEU PHE VAL SEQRES 8 E 122 ASN THR PHE SER ALA ASN ALA LEU VAL GLY LEU SER SER SEQRES 9 E 122 CYS SER ALA THR GLN CYS PHE GLY PRO LYS LEU GLU HIS SEQRES 10 E 122 HIS HIS HIS HIS HIS HET GAL F 1 12 HET SIA F 2 20 HET SIA F 3 20 HET GAL G 1 12 HET SIA G 2 20 HET SIA G 3 20 HET ACT B 201 4 HET ACT B 202 4 HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETNAM ACT ACETATE ION FORMUL 6 GAL 2(C6 H12 O6) FORMUL 6 SIA 4(C11 H19 N O9) FORMUL 8 ACT 2(C2 H3 O2 1-) FORMUL 10 HOH *420(H2 O) HELIX 1 1 TRP A 78 PRO A 80 5 3 HELIX 2 2 SER A 81 GLY A 96 1 16 HELIX 3 3 TYR A 110 PHE A 117 1 8 HELIX 4 4 TRP B 78 PRO B 80 5 3 HELIX 5 5 SER B 81 GLY B 96 1 16 HELIX 6 6 TYR B 110 PHE B 117 1 8 HELIX 7 7 TRP C 78 PRO C 80 5 3 HELIX 8 8 SER C 81 GLY C 96 1 16 HELIX 9 9 TYR C 110 PHE C 117 1 8 HELIX 10 10 TRP D 78 PRO D 80 5 3 HELIX 11 11 SER D 81 GLY D 96 1 16 HELIX 12 12 TYR D 110 PHE D 117 1 8 HELIX 13 13 TRP E 78 PRO E 80 5 3 HELIX 14 14 SER E 81 GLY E 96 1 16 HELIX 15 15 TYR E 110 PHE E 117 1 8 SHEET 1 A12 ALA B 32 ILE B 47 0 SHEET 2 A12 VAL B 99 GLN B 104 -1 O VAL B 99 N GLU B 37 SHEET 3 A12 ALA B 121 SER B 127 -1 O VAL B 123 N HIS B 102 SHEET 4 A12 ALA A 32 ILE A 47 -1 N VAL A 44 O LEU B 125 SHEET 5 A12 SER A 50 LYS A 59 -1 O VAL A 58 N VAL A 38 SHEET 6 A12 VAL A 67 VAL A 72 -1 O VAL A 67 N THR A 57 SHEET 7 A12 ALA A 121 SER A 127 1 O LEU A 122 N CYS A 70 SHEET 8 A12 ALA C 32 ILE C 47 -1 O VAL C 44 N LEU A 125 SHEET 9 A12 SER C 50 LYS C 59 -1 O LYS C 56 N SER C 40 SHEET 10 A12 VAL C 67 VAL C 72 -1 O ALA C 69 N ILE C 55 SHEET 11 A12 ALA C 121 SER C 127 1 O LEU C 122 N CYS C 70 SHEET 12 A12 ALA D 32 ILE D 47 -1 O VAL D 44 N LEU C 125 SHEET 1 B16 ALA B 32 ILE B 47 0 SHEET 2 B16 SER B 50 LYS B 59 -1 O VAL B 58 N VAL B 38 SHEET 3 B16 VAL B 67 VAL B 72 -1 O ALA B 69 N ILE B 55 SHEET 4 B16 ALA B 121 SER B 127 1 O LEU B 122 N CYS B 70 SHEET 5 B16 ALA A 32 ILE A 47 -1 N VAL A 44 O LEU B 125 SHEET 6 B16 VAL A 99 GLN A 104 -1 O VAL A 99 N GLU A 37 SHEET 7 B16 ALA A 121 SER A 127 -1 O VAL A 123 N HIS A 102 SHEET 8 B16 ALA C 32 ILE C 47 -1 O VAL C 44 N LEU A 125 SHEET 9 B16 VAL C 99 GLN C 104 -1 O VAL C 99 N GLU C 37 SHEET 10 B16 ALA C 121 SER C 127 -1 O ALA C 121 N GLN C 104 SHEET 11 B16 ALA D 32 ILE D 47 -1 O VAL D 44 N LEU C 125 SHEET 12 B16 SER D 98 GLN D 104 -1 O VAL D 99 N GLU D 37 SHEET 13 B16 ALA D 121 SER D 127 -1 O VAL D 123 N HIS D 102 SHEET 14 B16 ALA E 32 ILE E 47 -1 O VAL E 44 N LEU D 125 SHEET 15 B16 VAL E 99 GLN E 104 -1 O VAL E 99 N GLU E 37 SHEET 16 B16 ALA E 121 SER E 127 -1 O VAL E 123 N HIS E 102 SHEET 1 C 9 ALA D 32 ILE D 47 0 SHEET 2 C 9 SER D 50 LYS D 59 -1 O VAL D 58 N VAL D 38 SHEET 3 C 9 VAL D 67 VAL D 72 -1 O ALA D 69 N ILE D 55 SHEET 4 C 9 ALA D 121 SER D 127 1 O LEU D 122 N CYS D 70 SHEET 5 C 9 ALA E 32 ILE E 47 -1 O VAL E 44 N LEU D 125 SHEET 6 C 9 SER E 50 LYS E 59 -1 O LYS E 56 N SER E 40 SHEET 7 C 9 VAL E 67 VAL E 72 -1 O VAL E 67 N THR E 57 SHEET 8 C 9 ALA E 121 SER E 127 1 O LEU E 122 N CYS E 70 SHEET 9 C 9 ALA B 32 ILE B 47 -1 N VAL B 44 O LEU E 125 SSBOND 1 CYS A 54 CYS A 70 1555 1555 2.04 SSBOND 2 CYS A 128 CYS A 133 1555 1555 2.03 SSBOND 3 CYS B 54 CYS B 70 1555 1555 2.05 SSBOND 4 CYS B 128 CYS B 133 1555 1555 2.06 SSBOND 5 CYS C 54 CYS C 70 1555 1555 2.03 SSBOND 6 CYS C 128 CYS C 133 1555 1555 2.02 SSBOND 7 CYS D 54 CYS D 70 1555 1555 2.04 SSBOND 8 CYS D 128 CYS D 133 1555 1555 2.04 SSBOND 9 CYS E 54 CYS E 70 1555 1555 2.05 SSBOND 10 CYS E 128 CYS E 133 1555 1555 2.04 LINK O3 GAL F 1 C2 SIA F 2 1555 1555 1.46 LINK O8 SIA F 2 C2 SIA F 3 1555 1555 1.44 LINK O3 GAL G 1 C2 SIA G 2 1555 1555 1.45 LINK O8 SIA G 2 C2 SIA G 3 1555 1555 1.43 CRYST1 68.257 96.751 104.002 90.00 90.00 90.00 P 21 21 21 20 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014651 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010336 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009615 0.00000