HEADER MEMBRANE PROTEIN 11-OCT-14 4RJX TITLE CRYSTAL STRUCTURE OF THE OPRO MUTANT PROTEIN F62Y/D114Y COMPND MOL_ID: 1; COMPND 2 MOLECULE: PORIN O; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 25-438; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228; SOURCE 5 GENE: OPRO, PA3280; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA BARREL, OUTER MEMBRANE PROTEIN, POLYPHOSPHATE UPTAKE CHANNEL, KEYWDS 2 MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.VAN DEN BERG REVDAT 2 28-FEB-24 4RJX 1 REMARK SEQADV REVDAT 1 21-OCT-15 4RJX 0 JRNL AUTH N.MODI,S.GANGULY,I.BARCENA-URIBARRI,R.BENZ,B.VAN DEN BERG, JRNL AUTH 2 U.KLEINEKATHOFER JRNL TITL STRUCTURE, DYNAMICS, AND SUBSTRATE SPECIFICITY OF THE OPRO JRNL TITL 2 PORIN FROM PSEUDOMONAS AERUGINOSA. JRNL REF BIOPHYS.J. V. 109 1429 2015 JRNL REFN ISSN 0006-3495 JRNL PMID 26445443 JRNL DOI 10.1016/J.BPJ.2015.07.035 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 67025 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3393 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.3332 - 4.4341 1.00 2651 159 0.1633 0.1543 REMARK 3 2 4.4341 - 3.5214 1.00 2657 143 0.1366 0.1724 REMARK 3 3 3.5214 - 3.0768 1.00 2649 148 0.1420 0.1526 REMARK 3 4 3.0768 - 2.7957 1.00 2646 159 0.1462 0.1600 REMARK 3 5 2.7957 - 2.5955 1.00 2672 133 0.1478 0.1769 REMARK 3 6 2.5955 - 2.4425 1.00 2650 123 0.1454 0.1837 REMARK 3 7 2.4425 - 2.3203 1.00 2699 132 0.1490 0.1791 REMARK 3 8 2.3203 - 2.2193 1.00 2627 153 0.1345 0.1755 REMARK 3 9 2.2193 - 2.1339 1.00 2674 149 0.1337 0.1528 REMARK 3 10 2.1339 - 2.0603 1.00 2678 139 0.1349 0.1636 REMARK 3 11 2.0603 - 1.9959 1.00 2661 130 0.1338 0.1848 REMARK 3 12 1.9959 - 1.9388 1.00 2638 138 0.1367 0.1699 REMARK 3 13 1.9388 - 1.8878 1.00 2697 147 0.1547 0.1673 REMARK 3 14 1.8878 - 1.8418 1.00 2647 149 0.1548 0.1977 REMARK 3 15 1.8418 - 1.7999 1.00 2639 160 0.1610 0.1930 REMARK 3 16 1.7999 - 1.7616 1.00 2686 141 0.1708 0.2355 REMARK 3 17 1.7616 - 1.7264 1.00 2627 135 0.1785 0.2092 REMARK 3 18 1.7264 - 1.6938 1.00 2702 103 0.1877 0.2270 REMARK 3 19 1.6938 - 1.6635 1.00 2647 142 0.1974 0.2360 REMARK 3 20 1.6635 - 1.6353 1.00 2655 154 0.2127 0.2260 REMARK 3 21 1.6353 - 1.6090 1.00 2625 151 0.2212 0.2724 REMARK 3 22 1.6090 - 1.5842 0.99 2641 140 0.2302 0.2985 REMARK 3 23 1.5842 - 1.5609 0.98 2589 124 0.2435 0.2376 REMARK 3 24 1.5609 - 1.5400 0.96 2575 141 0.2606 0.3036 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3483 REMARK 3 ANGLE : 1.080 4727 REMARK 3 CHIRALITY : 0.049 490 REMARK 3 PLANARITY : 0.005 626 REMARK 3 DIHEDRAL : 12.913 1248 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID -10:46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9212 1.9326 0.8399 REMARK 3 T TENSOR REMARK 3 T11: 0.1637 T22: 0.1690 REMARK 3 T33: 0.1245 T12: 0.0042 REMARK 3 T13: -0.0234 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.2730 L22: 0.0667 REMARK 3 L33: 0.1820 L12: -0.0514 REMARK 3 L13: -0.0515 L23: -0.0792 REMARK 3 S TENSOR REMARK 3 S11: 0.0271 S12: 0.1017 S13: -0.0620 REMARK 3 S21: -0.0414 S22: 0.0078 S23: -0.0296 REMARK 3 S31: 0.0723 S32: -0.0196 S33: 0.0004 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 47:245 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3688 18.7974 20.2286 REMARK 3 T TENSOR REMARK 3 T11: 0.1218 T22: 0.1025 REMARK 3 T33: 0.1152 T12: 0.0046 REMARK 3 T13: -0.0092 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.2346 L22: 0.2131 REMARK 3 L33: 0.1935 L12: 0.0585 REMARK 3 L13: -0.0224 L23: 0.0505 REMARK 3 S TENSOR REMARK 3 S11: -0.0084 S12: 0.0342 S13: 0.0404 REMARK 3 S21: -0.0076 S22: 0.0103 S23: 0.0244 REMARK 3 S31: -0.0546 S32: -0.0154 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 246:271 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8978 28.0221 29.9278 REMARK 3 T TENSOR REMARK 3 T11: 0.1931 T22: 0.1360 REMARK 3 T33: 0.1715 T12: 0.0255 REMARK 3 T13: 0.0032 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 0.0776 L22: 0.0543 REMARK 3 L33: 0.0827 L12: 0.0693 REMARK 3 L13: 0.0679 L23: 0.0670 REMARK 3 S TENSOR REMARK 3 S11: 0.0314 S12: -0.0208 S13: 0.1172 REMARK 3 S21: 0.0033 S22: -0.0074 S23: 0.0362 REMARK 3 S31: -0.0575 S32: -0.0665 S33: -0.0091 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 272:375 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5300 30.9625 22.3958 REMARK 3 T TENSOR REMARK 3 T11: 0.1658 T22: 0.0941 REMARK 3 T33: 0.1323 T12: 0.0027 REMARK 3 T13: 0.0012 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 0.2791 L22: 0.1970 REMARK 3 L33: 0.1379 L12: 0.0630 REMARK 3 L13: 0.1480 L23: 0.0590 REMARK 3 S TENSOR REMARK 3 S11: -0.0091 S12: 0.0117 S13: 0.0717 REMARK 3 S21: 0.0003 S22: -0.0013 S23: 0.0151 REMARK 3 S31: -0.1220 S32: -0.0052 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 376:414 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7133 24.9295 23.8422 REMARK 3 T TENSOR REMARK 3 T11: 0.1657 T22: 0.1373 REMARK 3 T33: 0.1380 T12: -0.0104 REMARK 3 T13: -0.0133 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.0698 L22: 0.0222 REMARK 3 L33: 0.0134 L12: -0.0410 REMARK 3 L13: -0.0523 L23: 0.0222 REMARK 3 S TENSOR REMARK 3 S11: -0.0503 S12: -0.0204 S13: 0.0139 REMARK 3 S21: -0.0167 S22: 0.0100 S23: 0.0195 REMARK 3 S31: -0.1251 S32: 0.0916 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RJX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087438. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : SINGLE BOUNCE SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67047 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 29.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM SODIUM ACETATE, 0.225 M AMMONIUM REMARK 280 SULPHATE, 12% PEG4000, PH 4.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.73950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.25301 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.01333 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 43.73950 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 25.25301 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.01333 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 43.73950 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 25.25301 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.01333 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.50602 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 106.02667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 50.50602 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 106.02667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 50.50602 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 106.02667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 732 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 975 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 976 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -14 REMARK 465 VAL A -13 REMARK 465 ASN A -12 REMARK 465 ARG A -11 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A -9 CD OE1 NE2 REMARK 480 LYS A 25 CD CE NZ REMARK 480 LYS A 74 CE NZ REMARK 480 LYS A 296 CE NZ REMARK 480 LYS A 298 CD CE NZ REMARK 480 GLU A 318 CG CD OE1 OE2 REMARK 480 GLU A 328 CG CD OE1 OE2 REMARK 480 LYS A 345 CE NZ REMARK 480 LYS A 366 CD CE NZ REMARK 480 LYS A 388 CD CE NZ REMARK 480 LYS A 390 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 74 O HOH A 787 1.60 REMARK 500 O HOH A 845 O HOH A 1063 2.11 REMARK 500 O HOH A 1064 O HOH A 1065 2.13 REMARK 500 O HOH A 650 O HOH A 862 2.15 REMARK 500 O HOH A 873 O HOH A 930 2.16 REMARK 500 O HOH A 751 O HOH A 859 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 977 O HOH A 979 2555 2.07 REMARK 500 O HOH A 1057 O HOH A 1068 8544 2.09 REMARK 500 O HOH A 769 O HOH A 825 2555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 71 -45.76 69.34 REMARK 500 ASN A 104 123.23 -32.45 REMARK 500 ALA A 140 65.32 -163.54 REMARK 500 ASN A 144 33.84 -142.87 REMARK 500 MET A 161 -3.72 -144.87 REMARK 500 HIS A 194 45.15 -145.89 REMARK 500 ASN A 198 82.02 -151.84 REMARK 500 ALA A 230 111.04 -165.97 REMARK 500 ASN A 242 77.44 -112.96 REMARK 500 LYS A 258 -72.16 -132.29 REMARK 500 ASP A 288 -66.30 -105.58 REMARK 500 ALA A 320 69.65 36.97 REMARK 500 ASP A 323 -141.13 -140.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 C8E A 501 REMARK 610 C8E A 502 REMARK 610 C8E A 503 REMARK 610 C8E A 504 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RJW RELATED DB: PDB REMARK 900 WILD TYPE OPRO DBREF 4RJX A 1 414 UNP P32977 PORO_PSEAE 25 438 SEQADV 4RJX ALA A -14 UNP P32977 EXPRESSION TAG SEQADV 4RJX VAL A -13 UNP P32977 EXPRESSION TAG SEQADV 4RJX ASN A -12 UNP P32977 EXPRESSION TAG SEQADV 4RJX ARG A -11 UNP P32977 EXPRESSION TAG SEQADV 4RJX LEU A -10 UNP P32977 EXPRESSION TAG SEQADV 4RJX GLN A -9 UNP P32977 EXPRESSION TAG SEQADV 4RJX HIS A -8 UNP P32977 EXPRESSION TAG SEQADV 4RJX HIS A -7 UNP P32977 EXPRESSION TAG SEQADV 4RJX HIS A -6 UNP P32977 EXPRESSION TAG SEQADV 4RJX HIS A -5 UNP P32977 EXPRESSION TAG SEQADV 4RJX HIS A -4 UNP P32977 EXPRESSION TAG SEQADV 4RJX HIS A -3 UNP P32977 EXPRESSION TAG SEQADV 4RJX HIS A -2 UNP P32977 EXPRESSION TAG SEQADV 4RJX LEU A -1 UNP P32977 EXPRESSION TAG SEQADV 4RJX GLU A 0 UNP P32977 EXPRESSION TAG SEQADV 4RJX TYR A 62 UNP P32977 PHE 86 ENGINEERED MUTATION SEQADV 4RJX TYR A 114 UNP P32977 ASP 138 ENGINEERED MUTATION SEQRES 1 A 429 ALA VAL ASN ARG LEU GLN HIS HIS HIS HIS HIS HIS HIS SEQRES 2 A 429 LEU GLU GLY THR VAL THR THR ASP GLY ALA ASP ILE VAL SEQRES 3 A 429 ILE LYS THR LYS GLY GLY LEU GLU VAL ALA THR THR ASP SEQRES 4 A 429 LYS GLU PHE SER PHE LYS LEU GLY GLY ARG LEU GLN ALA SEQRES 5 A 429 ASP TYR SER ARG PHE ASP GLY PHE TYR THR LYS ASN GLY SEQRES 6 A 429 ASN THR ALA ASP ALA ALA TYR PHE ARG ARG ALA TYR ILE SEQRES 7 A 429 GLU LEU GLY GLY THR ALA TYR LYS ASP TRP LYS TYR GLN SEQRES 8 A 429 ILE ASN PHE ASP LEU SER HIS ASN THR GLY SER SER ASP SEQRES 9 A 429 ASN GLY TYR PHE ASP GLU ALA SER VAL THR TYR THR GLY SEQRES 10 A 429 PHE ASN PRO VAL ASN LEU LYS PHE GLY ARG PHE TYR PRO SEQRES 11 A 429 ASP PHE GLY LEU GLU LYS ALA THR SER SER LYS TRP VAL SEQRES 12 A 429 THR ALA PRO GLU ARG ASN ALA ALA TYR GLU LEU ALA ASP SEQRES 13 A 429 TRP ILE ASN THR HIS GLN ASP GLY MET GLY ALA GLN VAL SEQRES 14 A 429 ASN SER THR LEU ALA ASP MET ALA TYR LEU SER ALA GLY SEQRES 15 A 429 VAL SER ALA LYS ASP ALA ASP ASP SER ASP GLY ASP SER SEQRES 16 A 429 VAL LYS GLN PHE ASN PHE ARG GLY VAL PHE ALA PRO MET SEQRES 17 A 429 HIS GLU ALA GLY ASN VAL LEU HIS VAL GLY VAL ASN TYR SEQRES 18 A 429 ALA TYR ARG ASP LEU ASP ASP THR ALA PHE ASP SER ARG SEQRES 19 A 429 ILE ARG PRO ARG LEU GLY MET ARG GLY ILE ALA THR SER SEQRES 20 A 429 GLY GLY ASN ASP ALA GLY ASP ASN GLY ASN ARG ALA THR SEQRES 21 A 429 PHE GLY GLY VAL SER ASN SER PRO ALA GLY SER TYR LYS SEQRES 22 A 429 ASP ASP SER VAL TRP GLY LEU GLU GLY ALA TRP ALA MET SEQRES 23 A 429 GLY PRO PHE SER ALA GLN ALA GLU TYR LEU ALA ARG LYS SEQRES 24 A 429 LEU LYS ALA ASP ASP ASN ALA TYR LYS ASP ILE LYS ALA SEQRES 25 A 429 LYS GLY TYR TYR ALA GLN LEU ALA TYR THR LEU THR GLY SEQRES 26 A 429 GLU SER ARG GLN TYR LYS LEU GLU GLY ALA LYS PHE ASP SEQRES 27 A 429 SER VAL LYS PRO GLU ASN LYS GLU ILE GLY ALA TRP GLU SEQRES 28 A 429 VAL PHE TYR ARG TYR ASP ASN ILE LYS VAL GLU ASP ASP SEQRES 29 A 429 ASN VAL VAL ALA ASP THR ALA THR ARG GLU VAL GLY ASP SEQRES 30 A 429 THR LYS ALA LYS ALA HIS ASN LEU GLY VAL ASN TRP TYR SEQRES 31 A 429 VAL ASN ASP ALA VAL LYS ILE SER ALA ALA TYR VAL LYS SEQRES 32 A 429 ALA LYS THR ASP LYS ILE THR ASN ASN ASN GLY ASP ASP SEQRES 33 A 429 ASP GLY ASP GLY PHE VAL THR ARG LEU GLN TYR VAL PHE HET C8E A 501 8 HET C8E A 502 8 HET C8E A 503 7 HET C8E A 504 6 HET PO4 A 505 5 HETNAM C8E (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE HETNAM PO4 PHOSPHATE ION FORMUL 2 C8E 4(C16 H34 O5) FORMUL 6 PO4 O4 P 3- FORMUL 7 HOH *468(H2 O) HELIX 1 1 GLY A 118 THR A 123 1 6 HELIX 2 2 ALA A 136 THR A 145 5 10 HELIX 3 3 MET A 226 ALA A 230 5 5 HELIX 4 4 ALA A 237 GLY A 241 5 5 SHEET 1 A 5 ILE A 10 LYS A 13 0 SHEET 2 A 5 LEU A 18 THR A 22 -1 O ALA A 21 N VAL A 11 SHEET 3 A 5 SER A 28 GLY A 44 -1 O PHE A 29 N VAL A 20 SHEET 4 A 5 ALA A 53 ALA A 69 -1 O TYR A 57 N ASP A 38 SHEET 5 A 5 GLY A 234 ASN A 235 -1 O ASN A 235 N ALA A 56 SHEET 1 B19 ILE A 10 LYS A 13 0 SHEET 2 B19 LEU A 18 THR A 22 -1 O ALA A 21 N VAL A 11 SHEET 3 B19 SER A 28 GLY A 44 -1 O PHE A 29 N VAL A 20 SHEET 4 B19 ASP A 402 PHE A 414 -1 O LEU A 410 N ALA A 37 SHEET 5 B19 VAL A 380 ASP A 392 -1 N LYS A 381 O GLN A 411 SHEET 6 B19 THR A 363 TYR A 375 -1 N TRP A 374 O ILE A 382 SHEET 7 B19 ALA A 334 ASP A 348 -1 N ILE A 344 O ALA A 365 SHEET 8 B19 ILE A 295 THR A 307 -1 N LYS A 296 O GLU A 347 SHEET 9 B19 PHE A 274 ALA A 287 -1 N LEU A 285 O ILE A 295 SHEET 10 B19 TYR A 257 MET A 271 -1 N ASP A 259 O LYS A 286 SHEET 11 B19 ASN A 198 ASP A 210 -1 N GLY A 203 O GLU A 266 SHEET 12 B19 SER A 180 GLU A 195 -1 N PHE A 190 O VAL A 202 SHEET 13 B19 ALA A 162 ASP A 174 -1 N TYR A 163 O VAL A 189 SHEET 14 B19 MET A 150 LEU A 158 -1 N MET A 150 O ALA A 170 SHEET 15 B19 ASN A 107 ARG A 112 -1 N ASN A 107 O ASN A 155 SHEET 16 B19 PHE A 93 TYR A 100 -1 N TYR A 100 O LEU A 108 SHEET 17 B19 TRP A 73 ASP A 80 -1 N ASN A 78 O ASP A 94 SHEET 18 B19 ALA A 53 ALA A 69 -1 N LEU A 65 O ILE A 77 SHEET 19 B19 GLY A 234 ASN A 235 -1 O ASN A 235 N ALA A 56 SHEET 1 C 2 ARG A 313 LYS A 316 0 SHEET 2 C 2 LYS A 321 VAL A 325 -1 O SER A 324 N GLN A 314 CISPEP 1 ASN A 104 PRO A 105 0 11.73 SITE 1 AC1 2 TYR A 306 C8E A 502 SITE 1 AC2 2 PHE A 274 C8E A 501 SITE 1 AC3 3 GLY A 267 ALA A 268 ALA A 278 SITE 1 AC4 1 TYR A 100 SITE 1 AC5 12 ARG A 34 TYR A 62 ASP A 94 TYR A 114 SITE 2 AC5 12 SER A 124 SER A 125 ARG A 133 HOH A 665 SITE 3 AC5 12 HOH A 685 HOH A 803 HOH A1042 HOH A1060 CRYST1 87.479 87.479 159.040 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011431 0.006600 0.000000 0.00000 SCALE2 0.000000 0.013200 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006288 0.00000