HEADER TRANSPORT PROTEIN 12-OCT-14 4RK9 TITLE CRYSTAL STRUCTURE OF SUGAR TRANSPORTER BL01359 FROM BACILLUS TITLE 2 LICHENIFORMIS, TARGET EFI-510856, IN COMPLEX WITH STACHYOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBOHYDRATE ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN COMPND 3 MSME; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: MULTIPLE SUGAR-BINDING PROTEIN MSME; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS LICHENIFORMIS; SOURCE 3 ORGANISM_TAXID: 279010; SOURCE 4 STRAIN: DSM 13 / ATCC 14580; SOURCE 5 GENE: MSME, BL01359, BLI01140; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SUGAR TRANSPORTER, ABC-TYPE, ENZYME FUNCTION INITIATIVE, EFI, KEYWDS 2 STRUCTURAL GENOMICS, TRANSPORT PROTEIN, STACHYOSE EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.TORO,R.BHOSLE,N.AL OBAIDI,S.CHAMALA,J.D.ATTONITO, AUTHOR 2 A.SCOTT GLENN,S.CHOWDHURY,J.LAFLEUR,R.D.SIEDEL,B.HILLERICH,J.LOVE, AUTHOR 3 K.L.WHALEN,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 3 28-FEB-24 4RK9 1 HETSYN REVDAT 2 29-JUL-20 4RK9 1 COMPND REMARK SEQADV HETNAM REVDAT 2 2 1 LINK SITE ATOM REVDAT 1 05-NOV-14 4RK9 0 JRNL AUTH Y.PATSKOVSKY,R.TORO,R.BHOSLE,N.AL OBAIDI,S.CHAMALA, JRNL AUTH 2 A.SCOTT GLENN,J.D.ATTONITO,S.CHOWDHURY,J.LAFLEUR,R.D.SIEDEL, JRNL AUTH 3 B.HILLERICH,J.LOVE,K.L.WHALEN,J.A.GERLT,S.C.ALMO, JRNL AUTH 4 ENZYME FUNCTION INITIATIVE (EFI) JRNL TITL CRYSTAL STRUCTURE OF SUGAR TRANSPORTER BL01359 FROM BACILLUS JRNL TITL 2 LICHENIFORMIS, TARGET EFI-510856 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 45491 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1404 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3318 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6160 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 90 REMARK 3 SOLVENT ATOMS : 182 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.48000 REMARK 3 B22 (A**2) : 0.79000 REMARK 3 B33 (A**2) : 1.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.241 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.222 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.190 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.202 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6402 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 5974 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8678 ; 1.304 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13871 ; 0.772 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 766 ; 6.133 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 297 ;37.209 ;25.623 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1128 ;16.639 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;20.092 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 955 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7079 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1352 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3070 ;10.897 ; 5.672 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3069 ;10.895 ; 5.670 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3834 ;11.272 ; 8.471 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3835 ;11.271 ; 8.472 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3332 ;16.236 ; 6.934 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3333 ;16.234 ; 6.935 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4845 ;16.292 ; 9.826 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7560 ;16.045 ;21.170 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7506 ;16.089 ;21.084 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 0 A 415 4 REMARK 3 1 B 0 B 415 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 6019 ; 0.410 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 6019 ; 6.970 ; 5.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 37 A 415 REMARK 3 ORIGIN FOR THE GROUP (A): -25.7705 13.8567 -20.5105 REMARK 3 T TENSOR REMARK 3 T11: 0.0641 T22: 0.1032 REMARK 3 T33: 0.0992 T12: 0.0097 REMARK 3 T13: 0.0354 T23: -0.0313 REMARK 3 L TENSOR REMARK 3 L11: 3.0469 L22: 1.3047 REMARK 3 L33: 3.9212 L12: -0.1136 REMARK 3 L13: 0.4255 L23: -0.2194 REMARK 3 S TENSOR REMARK 3 S11: -0.0837 S12: -0.0974 S13: -0.0488 REMARK 3 S21: 0.0714 S22: -0.0186 S23: -0.2330 REMARK 3 S31: 0.3099 S32: 0.4732 S33: 0.1023 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 37 B 415 REMARK 3 ORIGIN FOR THE GROUP (A): 10.3698 8.5383 -34.7451 REMARK 3 T TENSOR REMARK 3 T11: 0.0437 T22: 0.1762 REMARK 3 T33: 0.2735 T12: 0.0034 REMARK 3 T13: 0.0067 T23: -0.1716 REMARK 3 L TENSOR REMARK 3 L11: 2.5293 L22: 2.7919 REMARK 3 L33: 4.7646 L12: -0.1057 REMARK 3 L13: 0.3588 L23: 0.4688 REMARK 3 S TENSOR REMARK 3 S11: -0.0455 S12: 0.3196 S13: -0.0661 REMARK 3 S21: -0.2109 S22: -0.2987 S23: 0.5634 REMARK 3 S31: -0.1486 S32: -0.5520 S33: 0.3442 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RK9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087450. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : ROCK CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47047 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : 0.09900 REMARK 200 FOR THE DATA SET : 27.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 10 MM BIS-TRIS, 500 MM NACL, REMARK 280 10% GLYCEROL, 5 MM DTT, TEV PROTEASE (1:100 RATIO, 10 MM REMARK 280 STACHYOSE; RESERVOIR: 0.1M MAGNESIUM CHLORIDE, 0.1M SODIUM REMARK 280 ACETATE:HCL, PH 4.6, 25% PEG 400; CRYOPROTECTION: RESERVOIR, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.16600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.29000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.95800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.29000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.16600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.95800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 17 REMARK 465 MET A 18 REMARK 465 ALA A 19 REMARK 465 GLY A 20 REMARK 465 CYS A 21 REMARK 465 SER A 22 REMARK 465 GLY A 23 REMARK 465 LYS A 24 REMARK 465 ASN A 25 REMARK 465 ALA A 26 REMARK 465 GLY A 27 REMARK 465 LYS A 28 REMARK 465 SER A 29 REMARK 465 GLY A 30 REMARK 465 ASP A 31 REMARK 465 GLU A 416 REMARK 465 GLN A 417 REMARK 465 SER B 17 REMARK 465 MET B 18 REMARK 465 ALA B 19 REMARK 465 GLY B 20 REMARK 465 CYS B 21 REMARK 465 SER B 22 REMARK 465 GLY B 23 REMARK 465 LYS B 24 REMARK 465 ASN B 25 REMARK 465 ALA B 26 REMARK 465 GLY B 27 REMARK 465 LYS B 28 REMARK 465 SER B 29 REMARK 465 GLY B 30 REMARK 465 ASP B 31 REMARK 465 GLU B 416 REMARK 465 GLN B 417 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 351 OG1 CG2 REMARK 470 GLU A 352 CG CD OE1 OE2 REMARK 470 ARG B 278 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 279 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 78 CA - CB - CG ANGL. DEV. = -14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 224 6.42 82.29 REMARK 500 ARG A 307 -77.17 -122.19 REMARK 500 LEU A 414 6.09 -67.16 REMARK 500 ASN B 138 -168.08 -161.78 REMARK 500 ASP B 208 99.77 -69.74 REMARK 500 ASP B 246 1.38 -62.09 REMARK 500 ARG B 307 -76.48 -126.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-510856 RELATED DB: TARGETTRACK DBREF 4RK9 A 19 417 UNP Q65LL6 Q65LL6_BACLD 19 417 DBREF 4RK9 B 19 417 UNP Q65LL6 Q65LL6_BACLD 19 417 SEQADV 4RK9 SER A 17 UNP Q65LL6 EXPRESSION TAG SEQADV 4RK9 MET A 18 UNP Q65LL6 EXPRESSION TAG SEQADV 4RK9 SER B 17 UNP Q65LL6 EXPRESSION TAG SEQADV 4RK9 MET B 18 UNP Q65LL6 EXPRESSION TAG SEQRES 1 A 401 SER MET ALA GLY CYS SER GLY LYS ASN ALA GLY LYS SER SEQRES 2 A 401 GLY ASP VAL THR LEU THR MET PHE SER THR MET THR ASN SEQRES 3 A 401 ASP SER GLU LYS ASN THR LEU ARG SER ILE ALA ASP ASP SEQRES 4 A 401 PHE GLU LYS GLU ASN GLU GLY ILE LYS ILE ASP ILE SER SEQRES 5 A 401 PHE PRO GLY PRO ASP TYR GLU ASN MET LEU ARG VAL LYS SEQRES 6 A 401 MET ALA ALA ASN ASP MET PRO ASP LEU PHE ASP THR HIS SEQRES 7 A 401 GLY TRP ALA LYS ILE ARG TYR GLY GLU TYR THR ALA ASP SEQRES 8 A 401 LEU LYS ASP MET ASP TRP VAL LYS HIS LEU ASP PRO ASN SEQRES 9 A 401 LEU ASP PRO ILE LEU LYS ASP GLU LYS GLY LYS VAL TYR SEQRES 10 A 401 ALA TYR PRO PHE ASN GLN ALA LYS ASP GLY ILE VAL TYR SEQRES 11 A 401 ASN ALA GLY LEU LEU LYS LYS TYR GLY LEU LYS PRO PRO SEQRES 12 A 401 GLN THR LEU ASP GLU LEU MET HIS ALA LEU GLU THR ILE SEQRES 13 A 401 LYS GLU LYS SER ASN GLY SER VAL ILE PRO PHE TRP PHE SEQRES 14 A 401 ALA GLY SER ASP LYS GLY ALA LEU ALA GLN PHE TYR ASP SEQRES 15 A 401 GLN LEU ALA THR PRO LEU LEU ILE THR ASP ASP ARG ARG SEQRES 16 A 401 ASN GLU LYS LYS ALA LEU GLU ASN GLY THR PHE ASP TRP SEQRES 17 A 401 SER ASP TYR THR LEU LEU ALA GLU THR PHE LYS GLU MET SEQRES 18 A 401 GLN GLU LYS GLN LEU ILE ASN LYS ASP ILE LEU THR ALA SEQRES 19 A 401 LYS PRO SER GLN LEU VAL GLU LEU MET ALA GLN GLU LYS SEQRES 20 A 401 ILE GLY PHE THR LEU SER VAL THR SER ILE GLY PRO ASP SEQRES 21 A 401 THR ARG GLU VAL ASN PRO ASP ILE GLN LEU GLY VAL MET SEQRES 22 A 401 PRO THR PRO ALA VAL TYR GLU GLY ASP LYS PRO SER TRP SEQRES 23 A 401 ILE GLY GLY GLU ARG HIS THR VAL ALA VAL TRP LYS ASP SEQRES 24 A 401 SER GLU HIS LEU GLU GLU ALA LYS ARG PHE ILE GLU PHE SEQRES 25 A 401 ALA ALA GLN PRO LYS TYR VAL LYS LYS ILE ALA GLU ALA SEQRES 26 A 401 THR SER PHE PRO GLN ALA LEU THR ASN THR GLU ALA GLU SEQRES 27 A 401 ASN TYR TYR SER LYS PHE TYR ASP GLN TYR GLU GLU ILE SEQRES 28 A 401 LYS ILE GLU PRO TYR PHE ASP ARG VAL TYR LEU PRO SER SEQRES 29 A 401 GLY MET TRP ASP VAL MET GLY THR THR GLY GLN GLU LEU SEQRES 30 A 401 LEU ALA GLY THR LEU THR PRO LYS GLN VAL SER GLU LYS SEQRES 31 A 401 MET LYS GLN GLU TYR SER ARG LEU GLN GLU GLN SEQRES 1 B 401 SER MET ALA GLY CYS SER GLY LYS ASN ALA GLY LYS SER SEQRES 2 B 401 GLY ASP VAL THR LEU THR MET PHE SER THR MET THR ASN SEQRES 3 B 401 ASP SER GLU LYS ASN THR LEU ARG SER ILE ALA ASP ASP SEQRES 4 B 401 PHE GLU LYS GLU ASN GLU GLY ILE LYS ILE ASP ILE SER SEQRES 5 B 401 PHE PRO GLY PRO ASP TYR GLU ASN MET LEU ARG VAL LYS SEQRES 6 B 401 MET ALA ALA ASN ASP MET PRO ASP LEU PHE ASP THR HIS SEQRES 7 B 401 GLY TRP ALA LYS ILE ARG TYR GLY GLU TYR THR ALA ASP SEQRES 8 B 401 LEU LYS ASP MET ASP TRP VAL LYS HIS LEU ASP PRO ASN SEQRES 9 B 401 LEU ASP PRO ILE LEU LYS ASP GLU LYS GLY LYS VAL TYR SEQRES 10 B 401 ALA TYR PRO PHE ASN GLN ALA LYS ASP GLY ILE VAL TYR SEQRES 11 B 401 ASN ALA GLY LEU LEU LYS LYS TYR GLY LEU LYS PRO PRO SEQRES 12 B 401 GLN THR LEU ASP GLU LEU MET HIS ALA LEU GLU THR ILE SEQRES 13 B 401 LYS GLU LYS SER ASN GLY SER VAL ILE PRO PHE TRP PHE SEQRES 14 B 401 ALA GLY SER ASP LYS GLY ALA LEU ALA GLN PHE TYR ASP SEQRES 15 B 401 GLN LEU ALA THR PRO LEU LEU ILE THR ASP ASP ARG ARG SEQRES 16 B 401 ASN GLU LYS LYS ALA LEU GLU ASN GLY THR PHE ASP TRP SEQRES 17 B 401 SER ASP TYR THR LEU LEU ALA GLU THR PHE LYS GLU MET SEQRES 18 B 401 GLN GLU LYS GLN LEU ILE ASN LYS ASP ILE LEU THR ALA SEQRES 19 B 401 LYS PRO SER GLN LEU VAL GLU LEU MET ALA GLN GLU LYS SEQRES 20 B 401 ILE GLY PHE THR LEU SER VAL THR SER ILE GLY PRO ASP SEQRES 21 B 401 THR ARG GLU VAL ASN PRO ASP ILE GLN LEU GLY VAL MET SEQRES 22 B 401 PRO THR PRO ALA VAL TYR GLU GLY ASP LYS PRO SER TRP SEQRES 23 B 401 ILE GLY GLY GLU ARG HIS THR VAL ALA VAL TRP LYS ASP SEQRES 24 B 401 SER GLU HIS LEU GLU GLU ALA LYS ARG PHE ILE GLU PHE SEQRES 25 B 401 ALA ALA GLN PRO LYS TYR VAL LYS LYS ILE ALA GLU ALA SEQRES 26 B 401 THR SER PHE PRO GLN ALA LEU THR ASN THR GLU ALA GLU SEQRES 27 B 401 ASN TYR TYR SER LYS PHE TYR ASP GLN TYR GLU GLU ILE SEQRES 28 B 401 LYS ILE GLU PRO TYR PHE ASP ARG VAL TYR LEU PRO SER SEQRES 29 B 401 GLY MET TRP ASP VAL MET GLY THR THR GLY GLN GLU LEU SEQRES 30 B 401 LEU ALA GLY THR LEU THR PRO LYS GLN VAL SER GLU LYS SEQRES 31 B 401 MET LYS GLN GLU TYR SER ARG LEU GLN GLU GLN HET GLC C 1 11 HET GLA C 2 11 HET GLA C 3 11 HET FRU C 4 12 HET GLC D 1 11 HET GLA D 2 11 HET GLA D 3 11 HET FRU D 4 12 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM GLA ALPHA-D-GALACTOPYRANOSE HETNAM FRU BETA-D-FRUCTOFURANOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GLA ALPHA-D-GALACTOSE; D-GALACTOSE; GALACTOSE; ALPHA D- HETSYN 2 GLA GALACTOSE HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE FORMUL 3 GLC 2(C6 H12 O6) FORMUL 3 GLA 4(C6 H12 O6) FORMUL 3 FRU 2(C6 H12 O6) FORMUL 5 HOH *182(H2 O) HELIX 1 1 ASN A 42 ASN A 60 1 19 HELIX 2 2 PRO A 70 PRO A 72 5 3 HELIX 3 3 ASP A 73 ALA A 84 1 12 HELIX 4 4 TYR A 101 THR A 105 5 5 HELIX 5 5 MET A 111 LEU A 117 5 7 HELIX 6 6 ASP A 118 ASN A 120 5 3 HELIX 7 7 LEU A 121 LYS A 126 1 6 HELIX 8 8 ALA A 148 TYR A 154 1 7 HELIX 9 9 THR A 161 SER A 176 1 16 HELIX 10 10 ASP A 189 ILE A 206 1 18 HELIX 11 11 GLU A 213 GLY A 220 1 8 HELIX 12 12 TYR A 227 LYS A 240 1 14 HELIX 13 13 LYS A 251 SER A 253 5 3 HELIX 14 14 GLN A 254 GLN A 261 1 8 HELIX 15 15 VAL A 270 SER A 272 5 3 HELIX 16 16 ILE A 273 ASN A 281 1 9 HELIX 17 17 HIS A 318 ALA A 330 1 13 HELIX 18 18 GLN A 331 ALA A 341 1 11 HELIX 19 19 TYR A 357 TYR A 364 1 8 HELIX 20 20 TYR A 372 LEU A 378 1 7 HELIX 21 21 GLY A 381 GLY A 396 1 16 HELIX 22 22 THR A 399 LEU A 414 1 16 HELIX 23 23 ASN B 42 ASN B 60 1 19 HELIX 24 24 PRO B 70 PRO B 72 5 3 HELIX 25 25 ASP B 73 ALA B 84 1 12 HELIX 26 26 TYR B 101 THR B 105 5 5 HELIX 27 27 MET B 111 LEU B 117 5 7 HELIX 28 28 ASP B 118 ASN B 120 5 3 HELIX 29 29 LEU B 121 LYS B 126 1 6 HELIX 30 30 ALA B 148 GLY B 155 1 8 HELIX 31 31 THR B 161 ASN B 177 1 17 HELIX 32 32 ASP B 189 ILE B 206 1 18 HELIX 33 33 GLU B 213 GLY B 220 1 8 HELIX 34 34 TYR B 227 LYS B 240 1 14 HELIX 35 35 LYS B 251 SER B 253 5 3 HELIX 36 36 GLN B 254 GLN B 261 1 8 HELIX 37 37 VAL B 270 SER B 272 5 3 HELIX 38 38 ILE B 273 ASN B 281 1 9 HELIX 39 39 HIS B 318 ALA B 330 1 13 HELIX 40 40 GLN B 331 THR B 342 1 12 HELIX 41 41 TYR B 357 TYR B 364 1 8 HELIX 42 42 TYR B 372 TYR B 377 1 6 HELIX 43 43 GLY B 381 ALA B 395 1 15 HELIX 44 44 THR B 399 LEU B 414 1 16 SHEET 1 A 5 LYS A 64 SER A 68 0 SHEET 2 A 5 THR A 33 PHE A 37 1 N LEU A 34 O LYS A 64 SHEET 3 A 5 LEU A 90 PHE A 91 1 O LEU A 90 N THR A 35 SHEET 4 A 5 THR A 309 VAL A 312 -1 O ALA A 311 N PHE A 91 SHEET 5 A 5 TYR A 135 PRO A 136 -1 N TYR A 135 O VAL A 310 SHEET 1 B 4 ILE A 181 PHE A 183 0 SHEET 2 B 4 ILE A 264 LEU A 268 1 O GLY A 265 N ILE A 181 SHEET 3 B 4 GLN A 139 ASN A 147 -1 N VAL A 145 O THR A 267 SHEET 4 B 4 LEU A 286 PRO A 290 -1 O MET A 289 N ILE A 144 SHEET 1 C 5 ILE A 181 PHE A 183 0 SHEET 2 C 5 ILE A 264 LEU A 268 1 O GLY A 265 N ILE A 181 SHEET 3 C 5 GLN A 139 ASN A 147 -1 N VAL A 145 O THR A 267 SHEET 4 C 5 TRP A 302 GLU A 306 -1 O GLY A 305 N ALA A 140 SHEET 5 C 5 ILE A 369 PRO A 371 1 O GLU A 370 N TRP A 302 SHEET 1 D 5 LYS B 64 SER B 68 0 SHEET 2 D 5 THR B 33 PHE B 37 1 N LEU B 34 O ASP B 66 SHEET 3 D 5 LEU B 90 PHE B 91 1 O LEU B 90 N PHE B 37 SHEET 4 D 5 THR B 309 VAL B 312 -1 O ALA B 311 N PHE B 91 SHEET 5 D 5 TYR B 135 PRO B 136 -1 N TYR B 135 O VAL B 310 SHEET 1 E 4 ILE B 181 PHE B 183 0 SHEET 2 E 4 ILE B 264 LEU B 268 1 O GLY B 265 N ILE B 181 SHEET 3 E 4 ALA B 140 ASN B 147 -1 N VAL B 145 O THR B 267 SHEET 4 E 4 LEU B 286 PRO B 290 -1 O GLY B 287 N TYR B 146 SHEET 1 F 5 ILE B 181 PHE B 183 0 SHEET 2 F 5 ILE B 264 LEU B 268 1 O GLY B 265 N ILE B 181 SHEET 3 F 5 ALA B 140 ASN B 147 -1 N VAL B 145 O THR B 267 SHEET 4 F 5 SER B 301 GLY B 305 -1 O GLY B 305 N ALA B 140 SHEET 5 F 5 LYS B 368 PRO B 371 1 O LYS B 368 N TRP B 302 LINK O6 GLC C 1 C1 GLA C 2 1555 1555 1.44 LINK C1 GLC C 1 O2 FRU C 4 1555 1555 1.44 LINK O6 GLA C 2 C1 GLA C 3 1555 1555 1.41 LINK O6 GLC D 1 C1 GLA D 2 1555 1555 1.46 LINK C1 GLC D 1 O2 FRU D 4 1555 1555 1.44 LINK O6 GLA D 2 C1 GLA D 3 1555 1555 1.46 CRYST1 74.332 85.916 132.580 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013453 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011639 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007543 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.878379 -0.448801 -0.164404 -18.61191 1 MTRIX2 2 -0.457961 0.691789 0.558301 32.11844 1 MTRIX3 2 -0.136833 0.565690 -0.813186 -52.17369 1