data_4RKG # _entry.id 4RKG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI NDB NA3252 ? ? RCSB RCSB087457 ? ? PDB 4RKG pdb_00004rkg 10.2210/pdb4rkg/pdb WWPDB D_1000087457 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-01-21 2 'Structure model' 1 1 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_struct_conn_angle 5 2 'Structure model' struct_conn 6 2 'Structure model' struct_ref_seq_dif 7 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 9 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 10 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 11 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 13 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 14 2 'Structure model' '_pdbx_struct_conn_angle.value' 15 2 'Structure model' '_struct_conn.pdbx_dist_value' 16 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 17 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 18 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 19 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 20 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 21 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 22 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 23 2 'Structure model' '_struct_ref_seq_dif.details' 24 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 25 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 26 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4RKG _pdbx_database_status.recvd_initial_deposition_date 2014-10-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4RKH _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zheng, S.' 1 'Ye, K.' 2 # _citation.id primary _citation.title 'Structural basis of X chromosome DNA recognition by the MSL2 CXC domain during Drosophila dosage compensation.' _citation.journal_abbrev 'Genes Dev.' _citation.journal_volume 28 _citation.page_first 2652 _citation.page_last 2662 _citation.year 2014 _citation.journal_id_ASTM GEDEEP _citation.country US _citation.journal_id_ISSN 0890-9369 _citation.journal_id_CSD 2056 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25452275 _citation.pdbx_database_id_DOI 10.1101/gad.250936.114 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zheng, S.' 1 ? primary 'Villa, R.' 2 ? primary 'Wang, J.' 3 ? primary 'Feng, Y.' 4 ? primary 'Wang, J.' 5 ? primary 'Becker, P.B.' 6 ? primary 'Ye, K.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'E3 ubiquitin-protein ligase msl-2' 5652.500 2 6.3.2.- C560G 'CXC domain (UNP RESIDUES 520-570)' ? 2 polymer syn ;DNA (5'-D(*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*C)-3') ; 3665.368 2 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 9 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Protein male-specific lethal-2' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no SPPKPKCRCGISGSSNTLTTCRNSRCPCYKSYNSCAGCHCVGCKNPHKEDYV SPPKPKCRCGISGSSNTLTTCRNSRCPCYKSYNSCAGCHCVGCKNPHKEDYV A,B ? 2 polydeoxyribonucleotide no no '(DG)(DC)(DG)(DC)(DG)(DC)(DG)(DC)(DG)(DC)(DG)(DC)' GCGCGCGCGCGC H,I ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 PRO n 1 3 PRO n 1 4 LYS n 1 5 PRO n 1 6 LYS n 1 7 CYS n 1 8 ARG n 1 9 CYS n 1 10 GLY n 1 11 ILE n 1 12 SER n 1 13 GLY n 1 14 SER n 1 15 SER n 1 16 ASN n 1 17 THR n 1 18 LEU n 1 19 THR n 1 20 THR n 1 21 CYS n 1 22 ARG n 1 23 ASN n 1 24 SER n 1 25 ARG n 1 26 CYS n 1 27 PRO n 1 28 CYS n 1 29 TYR n 1 30 LYS n 1 31 SER n 1 32 TYR n 1 33 ASN n 1 34 SER n 1 35 CYS n 1 36 ALA n 1 37 GLY n 1 38 CYS n 1 39 HIS n 1 40 CYS n 1 41 VAL n 1 42 GLY n 1 43 CYS n 1 44 LYS n 1 45 ASN n 1 46 PRO n 1 47 HIS n 1 48 LYS n 1 49 GLU n 1 50 ASP n 1 51 TYR n 1 52 VAL n 2 1 DG n 2 2 DC n 2 3 DG n 2 4 DC n 2 5 DG n 2 6 DC n 2 7 DG n 2 8 DC n 2 9 DG n 2 10 DC n 2 11 DG n 2 12 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Fruit fly' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CG3241, msl-2, MSL2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Drosophila melanogaster' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7227 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a-SMT3 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 519 ? ? ? A . n A 1 2 PRO 2 520 ? ? ? A . n A 1 3 PRO 3 521 ? ? ? A . n A 1 4 LYS 4 522 ? ? ? A . n A 1 5 PRO 5 523 523 PRO PRO A . n A 1 6 LYS 6 524 524 LYS LYS A . n A 1 7 CYS 7 525 525 CYS CYS A . n A 1 8 ARG 8 526 526 ARG ARG A . n A 1 9 CYS 9 527 527 CYS CYS A . n A 1 10 GLY 10 528 528 GLY GLY A . n A 1 11 ILE 11 529 529 ILE ILE A . n A 1 12 SER 12 530 ? ? ? A . n A 1 13 GLY 13 531 ? ? ? A . n A 1 14 SER 14 532 ? ? ? A . n A 1 15 SER 15 533 ? ? ? A . n A 1 16 ASN 16 534 ? ? ? A . n A 1 17 THR 17 535 ? ? ? A . n A 1 18 LEU 18 536 ? ? ? A . n A 1 19 THR 19 537 537 THR THR A . n A 1 20 THR 20 538 538 THR THR A . n A 1 21 CYS 21 539 539 CYS CYS A . n A 1 22 ARG 22 540 540 ARG ARG A . n A 1 23 ASN 23 541 541 ASN ASN A . n A 1 24 SER 24 542 542 SER SER A . n A 1 25 ARG 25 543 543 ARG ARG A . n A 1 26 CYS 26 544 544 CYS CYS A . n A 1 27 PRO 27 545 545 PRO PRO A . n A 1 28 CYS 28 546 546 CYS CYS A . n A 1 29 TYR 29 547 547 TYR TYR A . n A 1 30 LYS 30 548 548 LYS LYS A . n A 1 31 SER 31 549 549 SER SER A . n A 1 32 TYR 32 550 550 TYR TYR A . n A 1 33 ASN 33 551 551 ASN ASN A . n A 1 34 SER 34 552 552 SER SER A . n A 1 35 CYS 35 553 553 CYS CYS A . n A 1 36 ALA 36 554 554 ALA ALA A . n A 1 37 GLY 37 555 555 GLY GLY A . n A 1 38 CYS 38 556 556 CYS CYS A . n A 1 39 HIS 39 557 557 HIS HIS A . n A 1 40 CYS 40 558 558 CYS CYS A . n A 1 41 VAL 41 559 559 VAL VAL A . n A 1 42 GLY 42 560 560 GLY GLY A . n A 1 43 CYS 43 561 561 CYS CYS A . n A 1 44 LYS 44 562 562 LYS LYS A . n A 1 45 ASN 45 563 563 ASN ASN A . n A 1 46 PRO 46 564 564 PRO PRO A . n A 1 47 HIS 47 565 565 HIS HIS A . n A 1 48 LYS 48 566 566 LYS LYS A . n A 1 49 GLU 49 567 ? ? ? A . n A 1 50 ASP 50 568 ? ? ? A . n A 1 51 TYR 51 569 ? ? ? A . n A 1 52 VAL 52 570 ? ? ? A . n B 1 1 SER 1 519 ? ? ? B . n B 1 2 PRO 2 520 ? ? ? B . n B 1 3 PRO 3 521 ? ? ? B . n B 1 4 LYS 4 522 522 LYS LYS B . n B 1 5 PRO 5 523 523 PRO PRO B . n B 1 6 LYS 6 524 524 LYS LYS B . n B 1 7 CYS 7 525 525 CYS CYS B . n B 1 8 ARG 8 526 526 ARG ARG B . n B 1 9 CYS 9 527 527 CYS CYS B . n B 1 10 GLY 10 528 528 GLY GLY B . n B 1 11 ILE 11 529 529 ILE ILE B . n B 1 12 SER 12 530 530 SER SER B . n B 1 13 GLY 13 531 531 GLY GLY B . n B 1 14 SER 14 532 532 SER SER B . n B 1 15 SER 15 533 533 SER SER B . n B 1 16 ASN 16 534 534 ASN ASN B . n B 1 17 THR 17 535 535 THR THR B . n B 1 18 LEU 18 536 536 LEU LEU B . n B 1 19 THR 19 537 537 THR THR B . n B 1 20 THR 20 538 538 THR THR B . n B 1 21 CYS 21 539 539 CYS CYS B . n B 1 22 ARG 22 540 540 ARG ARG B . n B 1 23 ASN 23 541 541 ASN ASN B . n B 1 24 SER 24 542 542 SER SER B . n B 1 25 ARG 25 543 543 ARG ARG B . n B 1 26 CYS 26 544 544 CYS CYS B . n B 1 27 PRO 27 545 545 PRO PRO B . n B 1 28 CYS 28 546 546 CYS CYS B . n B 1 29 TYR 29 547 547 TYR TYR B . n B 1 30 LYS 30 548 548 LYS LYS B . n B 1 31 SER 31 549 549 SER SER B . n B 1 32 TYR 32 550 550 TYR TYR B . n B 1 33 ASN 33 551 551 ASN ASN B . n B 1 34 SER 34 552 552 SER SER B . n B 1 35 CYS 35 553 553 CYS CYS B . n B 1 36 ALA 36 554 554 ALA ALA B . n B 1 37 GLY 37 555 555 GLY GLY B . n B 1 38 CYS 38 556 556 CYS CYS B . n B 1 39 HIS 39 557 557 HIS HIS B . n B 1 40 CYS 40 558 558 CYS CYS B . n B 1 41 VAL 41 559 559 VAL VAL B . n B 1 42 GLY 42 560 560 GLY GLY B . n B 1 43 CYS 43 561 561 CYS CYS B . n B 1 44 LYS 44 562 562 LYS LYS B . n B 1 45 ASN 45 563 563 ASN ASN B . n B 1 46 PRO 46 564 564 PRO PRO B . n B 1 47 HIS 47 565 565 HIS HIS B . n B 1 48 LYS 48 566 566 LYS LYS B . n B 1 49 GLU 49 567 567 GLU GLU B . n B 1 50 ASP 50 568 ? ? ? B . n B 1 51 TYR 51 569 ? ? ? B . n B 1 52 VAL 52 570 ? ? ? B . n C 2 1 DG 1 1 1 DG DG H . n C 2 2 DC 2 2 2 DC DC H . n C 2 3 DG 3 3 3 DG DG H . n C 2 4 DC 4 4 4 DC DC H . n C 2 5 DG 5 5 5 DG DG H . n C 2 6 DC 6 6 6 DC DC H . n C 2 7 DG 7 7 7 DG DG H . n C 2 8 DC 8 8 8 DC DC H . n C 2 9 DG 9 9 9 DG DG H . n C 2 10 DC 10 10 10 DC DC H . n C 2 11 DG 11 11 11 DG DG H . n C 2 12 DC 12 12 12 DC DC H . n D 2 1 DG 1 1 1 DG DG I . n D 2 2 DC 2 2 2 DC DC I . n D 2 3 DG 3 3 3 DG DG I . n D 2 4 DC 4 4 4 DC DC I . n D 2 5 DG 5 5 5 DG DG I . n D 2 6 DC 6 6 6 DC DC I . n D 2 7 DG 7 7 7 DG DG I . n D 2 8 DC 8 8 8 DC DC I . n D 2 9 DG 9 9 9 DG DG I . n D 2 10 DC 10 10 10 DC DC I . n D 2 11 DG 11 11 11 DG DG I . n D 2 12 DC 12 12 12 DC DC I . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN 1 701 701 ZN ZN A . F 3 ZN 1 702 702 ZN ZN A . G 3 ZN 1 703 703 ZN ZN A . H 3 ZN 1 701 701 ZN ZN B . I 3 ZN 1 702 702 ZN ZN B . J 3 ZN 1 703 703 ZN ZN B . K 3 ZN 1 701 701 ZN ZN H . L 3 ZN 1 702 702 ZN ZN H . M 3 ZN 1 703 703 ZN ZN H . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.9_1692)' ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # _cell.entry_id 4RKG _cell.length_a 40.705 _cell.length_b 75.251 _cell.length_c 77.436 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4RKG _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4RKG _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.18 _exptl_crystal.density_percent_sol 61.34 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '0.1M HEPES-Na (pH 7.5), 25% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 298 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2012-10-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97913 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRF BEAMLINE BL17U' _diffrn_source.pdbx_synchrotron_site SSRF _diffrn_source.pdbx_synchrotron_beamline BL17U _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97913 # _reflns.entry_id 4RKG _reflns.observed_criterion_sigma_I 6.5 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.5 _reflns.number_obs 8584 _reflns.number_all 8732 _reflns.percent_possible_obs 98.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.5 _reflns_shell.d_res_low 2.55 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.699 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 12.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 416 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4RKG _refine.ls_number_reflns_obs 8510 _refine.ls_number_reflns_all 8648 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 18.015 _refine.ls_d_res_high 2.500 _refine.ls_percent_reflns_obs 98.42 _refine.ls_R_factor_obs 0.2306 _refine.ls_R_factor_all 0.2306 _refine.ls_R_factor_R_work 0.2265 _refine.ls_R_factor_R_free 0.3149 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.77 _refine.ls_number_reflns_R_free 406 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.38 _refine.pdbx_overall_phase_error 34.70 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 615 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1110 _refine_hist.d_res_high 2.500 _refine_hist.d_res_low 18.015 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.009 ? ? 1170 ? 'X-RAY DIFFRACTION' f_angle_d 1.053 ? ? 1670 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 27.875 ? ? 473 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.047 ? ? 180 ? 'X-RAY DIFFRACTION' f_plane_restr 0.006 ? ? 131 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs 'X-RAY DIFFRACTION' 5 2.5000 2.6924 1587 0.3337 99.00 0.3854 . . 89 . . . . 'X-RAY DIFFRACTION' 5 2.6924 2.9623 1611 0.2993 100.00 0.3529 . . 78 . . . . 'X-RAY DIFFRACTION' 5 2.9623 3.3885 1588 0.2569 97.00 0.3632 . . 82 . . . . 'X-RAY DIFFRACTION' 5 3.3885 4.2598 1641 0.2251 100.00 0.3672 . . 81 . . . . 'X-RAY DIFFRACTION' 5 4.2598 18.0156 1677 0.1987 96.00 0.2600 . . 76 . . . . # _database_PDB_matrix.entry_id 4RKG _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4RKG _struct.title 'Structure of the MSL2 CXC domain bound with a non-specific (GC)6 DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4RKG _struct_keywords.pdbx_keywords 'DNA binding protein/DNA' _struct_keywords.text 'Zinc cluster, DNA binding domain, Dosage compensation, DNA binding protein-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP MSL2_DROME P50534 1 PPKPKCRCGISGSSNTLTTCRNSRCPCYKSYNSCAGCHCVCCKNPHKEDYV 520 ? 2 PDB 4RKG 4RKG 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4RKG A 2 ? 52 ? P50534 520 ? 570 ? 520 570 2 1 4RKG B 2 ? 52 ? P50534 520 ? 570 ? 520 570 3 2 4RKG H 1 ? 12 ? 4RKG 1 ? 12 ? 1 12 4 2 4RKG I 1 ? 12 ? 4RKG 1 ? 12 ? 1 12 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4RKG SER A 1 ? UNP P50534 ? ? 'expression tag' 519 1 1 4RKG GLY A 42 ? UNP P50534 CYS 560 'engineered mutation' 560 2 2 4RKG SER B 1 ? UNP P50534 ? ? 'expression tag' 519 3 2 4RKG GLY B 42 ? UNP P50534 CYS 560 'engineered mutation' 560 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS A 26 ? SER A 31 ? CYS A 544 SER A 549 1 ? 6 HELX_P HELX_P2 2 CYS B 26 ? SER B 31 ? CYS B 544 SER B 549 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 7 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 525 A ZN 701 1_555 ? ? ? ? ? ? ? 2.281 ? ? metalc2 metalc ? ? A CYS 7 SG ? ? ? 1_555 G ZN . ZN ? ? A CYS 525 A ZN 703 1_555 ? ? ? ? ? ? ? 2.075 ? ? metalc3 metalc ? ? A CYS 9 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 527 A ZN 701 1_555 ? ? ? ? ? ? ? 2.357 ? ? metalc4 metalc ? ? A CYS 21 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 539 A ZN 701 1_555 ? ? ? ? ? ? ? 2.363 ? ? metalc5 metalc ? ? A CYS 21 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 539 A ZN 702 1_555 ? ? ? ? ? ? ? 2.215 ? ? metalc6 metalc ? ? A CYS 26 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 544 A ZN 701 1_555 ? ? ? ? ? ? ? 2.338 ? ? metalc7 metalc ? ? A CYS 28 SG ? ? ? 1_555 G ZN . ZN ? ? A CYS 546 A ZN 703 1_555 ? ? ? ? ? ? ? 2.377 ? ? metalc8 metalc ? ? A CYS 35 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 553 A ZN 702 1_555 ? ? ? ? ? ? ? 2.410 ? ? metalc9 metalc ? ? A CYS 35 SG ? ? ? 1_555 G ZN . ZN ? ? A CYS 553 A ZN 703 1_555 ? ? ? ? ? ? ? 2.245 ? ? metalc10 metalc ? ? A CYS 38 SG ? ? ? 1_555 G ZN . ZN ? ? A CYS 556 A ZN 703 1_555 ? ? ? ? ? ? ? 2.185 ? ? metalc11 metalc ? ? A CYS 40 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 558 A ZN 702 1_555 ? ? ? ? ? ? ? 2.564 ? ? metalc12 metalc ? ? A CYS 43 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 561 A ZN 702 1_555 ? ? ? ? ? ? ? 2.254 ? ? metalc13 metalc ? ? B CYS 7 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 525 B ZN 701 1_555 ? ? ? ? ? ? ? 2.430 ? ? metalc14 metalc ? ? B CYS 7 SG ? ? ? 1_555 J ZN . ZN ? ? B CYS 525 B ZN 703 1_555 ? ? ? ? ? ? ? 2.277 ? ? metalc15 metalc ? ? B CYS 9 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 527 B ZN 701 1_555 ? ? ? ? ? ? ? 2.196 ? ? metalc16 metalc ? ? B CYS 21 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 539 B ZN 701 1_555 ? ? ? ? ? ? ? 2.374 ? ? metalc17 metalc ? ? B CYS 21 SG ? ? ? 1_555 I ZN . ZN ? ? B CYS 539 B ZN 702 1_555 ? ? ? ? ? ? ? 2.277 ? ? metalc18 metalc ? ? B CYS 26 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 544 B ZN 701 1_555 ? ? ? ? ? ? ? 2.315 ? ? metalc19 metalc ? ? B CYS 28 SG ? ? ? 1_555 J ZN . ZN ? ? B CYS 546 B ZN 703 1_555 ? ? ? ? ? ? ? 2.261 ? ? metalc20 metalc ? ? B CYS 35 SG ? ? ? 1_555 I ZN . ZN ? ? B CYS 553 B ZN 702 1_555 ? ? ? ? ? ? ? 2.348 ? ? metalc21 metalc ? ? B CYS 35 SG ? ? ? 1_555 J ZN . ZN ? ? B CYS 553 B ZN 703 1_555 ? ? ? ? ? ? ? 2.392 ? ? metalc22 metalc ? ? B CYS 38 SG ? ? ? 1_555 J ZN . ZN ? ? B CYS 556 B ZN 703 1_555 ? ? ? ? ? ? ? 2.345 ? ? metalc23 metalc ? ? B CYS 40 SG ? ? ? 1_555 I ZN . ZN ? ? B CYS 558 B ZN 702 1_555 ? ? ? ? ? ? ? 2.280 ? ? metalc24 metalc ? ? B CYS 43 SG ? ? ? 1_555 I ZN . ZN ? ? B CYS 561 B ZN 702 1_555 ? ? ? ? ? ? ? 2.381 ? ? hydrog1 hydrog ? ? C DG 1 N1 ? ? ? 1_555 D DC 12 N3 ? ? H DG 1 I DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C DG 1 N2 ? ? ? 1_555 D DC 12 O2 ? ? H DG 1 I DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C DG 1 O6 ? ? ? 1_555 D DC 12 N4 ? ? H DG 1 I DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C DC 2 N3 ? ? ? 1_555 D DG 11 N1 ? ? H DC 2 I DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C DC 2 N4 ? ? ? 1_555 D DG 11 O6 ? ? H DC 2 I DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DC 2 O2 ? ? ? 1_555 D DG 11 N2 ? ? H DC 2 I DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C DG 3 N1 ? ? ? 1_555 D DC 10 N3 ? ? H DG 3 I DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C DG 3 N2 ? ? ? 1_555 D DC 10 O2 ? ? H DG 3 I DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DG 3 O6 ? ? ? 1_555 D DC 10 N4 ? ? H DG 3 I DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DC 4 N3 ? ? ? 1_555 D DG 9 N1 ? ? H DC 4 I DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C DC 4 N4 ? ? ? 1_555 D DG 9 O6 ? ? H DC 4 I DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C DC 4 O2 ? ? ? 1_555 D DG 9 N2 ? ? H DC 4 I DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C DG 5 N1 ? ? ? 1_555 D DC 8 N3 ? ? H DG 5 I DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C DG 5 N2 ? ? ? 1_555 D DC 8 O2 ? ? H DG 5 I DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C DG 5 O6 ? ? ? 1_555 D DC 8 N4 ? ? H DG 5 I DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C DC 6 N3 ? ? ? 1_555 D DG 7 N1 ? ? H DC 6 I DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DC 6 N4 ? ? ? 1_555 D DG 7 O6 ? ? H DC 6 I DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DC 6 O2 ? ? ? 1_555 D DG 7 N2 ? ? H DC 6 I DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DG 7 N1 ? ? ? 1_555 D DC 6 N3 ? ? H DG 7 I DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DG 7 N2 ? ? ? 1_555 D DC 6 O2 ? ? H DG 7 I DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DG 7 O6 ? ? ? 1_555 D DC 6 N4 ? ? H DG 7 I DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DC 8 N3 ? ? ? 1_555 D DG 5 N1 ? ? H DC 8 I DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DC 8 N4 ? ? ? 1_555 D DG 5 O6 ? ? H DC 8 I DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DC 8 O2 ? ? ? 1_555 D DG 5 N2 ? ? H DC 8 I DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DG 9 N1 ? ? ? 1_555 D DC 4 N3 ? ? H DG 9 I DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DG 9 N2 ? ? ? 1_555 D DC 4 O2 ? ? H DG 9 I DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DG 9 O6 ? ? ? 1_555 D DC 4 N4 ? ? H DG 9 I DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DC 10 N3 ? ? ? 1_555 D DG 3 N1 ? ? H DC 10 I DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DC 10 N4 ? ? ? 1_555 D DG 3 O6 ? ? H DC 10 I DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DC 10 O2 ? ? ? 1_555 D DG 3 N2 ? ? H DC 10 I DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DG 11 N1 ? ? ? 1_555 D DC 2 N3 ? ? H DG 11 I DC 2 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog32 hydrog ? ? C DC 12 O2 ? ? ? 1_555 D DG 1 N2 ? ? H DC 12 I DG 1 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 7 ? A CYS 525 ? 1_555 ZN ? E ZN . ? A ZN 701 ? 1_555 SG ? A CYS 9 ? A CYS 527 ? 1_555 113.1 ? 2 SG ? A CYS 7 ? A CYS 525 ? 1_555 ZN ? E ZN . ? A ZN 701 ? 1_555 SG ? A CYS 21 ? A CYS 539 ? 1_555 103.3 ? 3 SG ? A CYS 9 ? A CYS 527 ? 1_555 ZN ? E ZN . ? A ZN 701 ? 1_555 SG ? A CYS 21 ? A CYS 539 ? 1_555 103.5 ? 4 SG ? A CYS 7 ? A CYS 525 ? 1_555 ZN ? E ZN . ? A ZN 701 ? 1_555 SG ? A CYS 26 ? A CYS 544 ? 1_555 114.5 ? 5 SG ? A CYS 9 ? A CYS 527 ? 1_555 ZN ? E ZN . ? A ZN 701 ? 1_555 SG ? A CYS 26 ? A CYS 544 ? 1_555 109.8 ? 6 SG ? A CYS 21 ? A CYS 539 ? 1_555 ZN ? E ZN . ? A ZN 701 ? 1_555 SG ? A CYS 26 ? A CYS 544 ? 1_555 111.9 ? 7 SG ? A CYS 7 ? A CYS 525 ? 1_555 ZN ? G ZN . ? A ZN 703 ? 1_555 SG ? A CYS 28 ? A CYS 546 ? 1_555 107.1 ? 8 SG ? A CYS 7 ? A CYS 525 ? 1_555 ZN ? G ZN . ? A ZN 703 ? 1_555 SG ? A CYS 35 ? A CYS 553 ? 1_555 113.6 ? 9 SG ? A CYS 28 ? A CYS 546 ? 1_555 ZN ? G ZN . ? A ZN 703 ? 1_555 SG ? A CYS 35 ? A CYS 553 ? 1_555 117.9 ? 10 SG ? A CYS 7 ? A CYS 525 ? 1_555 ZN ? G ZN . ? A ZN 703 ? 1_555 SG ? A CYS 38 ? A CYS 556 ? 1_555 105.8 ? 11 SG ? A CYS 28 ? A CYS 546 ? 1_555 ZN ? G ZN . ? A ZN 703 ? 1_555 SG ? A CYS 38 ? A CYS 556 ? 1_555 98.1 ? 12 SG ? A CYS 35 ? A CYS 553 ? 1_555 ZN ? G ZN . ? A ZN 703 ? 1_555 SG ? A CYS 38 ? A CYS 556 ? 1_555 112.7 ? 13 SG ? A CYS 21 ? A CYS 539 ? 1_555 ZN ? F ZN . ? A ZN 702 ? 1_555 SG ? A CYS 35 ? A CYS 553 ? 1_555 110.1 ? 14 SG ? A CYS 21 ? A CYS 539 ? 1_555 ZN ? F ZN . ? A ZN 702 ? 1_555 SG ? A CYS 40 ? A CYS 558 ? 1_555 112.5 ? 15 SG ? A CYS 35 ? A CYS 553 ? 1_555 ZN ? F ZN . ? A ZN 702 ? 1_555 SG ? A CYS 40 ? A CYS 558 ? 1_555 102.7 ? 16 SG ? A CYS 21 ? A CYS 539 ? 1_555 ZN ? F ZN . ? A ZN 702 ? 1_555 SG ? A CYS 43 ? A CYS 561 ? 1_555 112.9 ? 17 SG ? A CYS 35 ? A CYS 553 ? 1_555 ZN ? F ZN . ? A ZN 702 ? 1_555 SG ? A CYS 43 ? A CYS 561 ? 1_555 104.2 ? 18 SG ? A CYS 40 ? A CYS 558 ? 1_555 ZN ? F ZN . ? A ZN 702 ? 1_555 SG ? A CYS 43 ? A CYS 561 ? 1_555 113.5 ? 19 SG ? B CYS 7 ? B CYS 525 ? 1_555 ZN ? H ZN . ? B ZN 701 ? 1_555 SG ? B CYS 9 ? B CYS 527 ? 1_555 105.8 ? 20 SG ? B CYS 7 ? B CYS 525 ? 1_555 ZN ? H ZN . ? B ZN 701 ? 1_555 SG ? B CYS 21 ? B CYS 539 ? 1_555 97.9 ? 21 SG ? B CYS 9 ? B CYS 527 ? 1_555 ZN ? H ZN . ? B ZN 701 ? 1_555 SG ? B CYS 21 ? B CYS 539 ? 1_555 103.5 ? 22 SG ? B CYS 7 ? B CYS 525 ? 1_555 ZN ? H ZN . ? B ZN 701 ? 1_555 SG ? B CYS 26 ? B CYS 544 ? 1_555 119.4 ? 23 SG ? B CYS 9 ? B CYS 527 ? 1_555 ZN ? H ZN . ? B ZN 701 ? 1_555 SG ? B CYS 26 ? B CYS 544 ? 1_555 114.9 ? 24 SG ? B CYS 21 ? B CYS 539 ? 1_555 ZN ? H ZN . ? B ZN 701 ? 1_555 SG ? B CYS 26 ? B CYS 544 ? 1_555 112.9 ? 25 SG ? B CYS 7 ? B CYS 525 ? 1_555 ZN ? J ZN . ? B ZN 703 ? 1_555 SG ? B CYS 28 ? B CYS 546 ? 1_555 116.7 ? 26 SG ? B CYS 7 ? B CYS 525 ? 1_555 ZN ? J ZN . ? B ZN 703 ? 1_555 SG ? B CYS 35 ? B CYS 553 ? 1_555 108.0 ? 27 SG ? B CYS 28 ? B CYS 546 ? 1_555 ZN ? J ZN . ? B ZN 703 ? 1_555 SG ? B CYS 35 ? B CYS 553 ? 1_555 116.9 ? 28 SG ? B CYS 7 ? B CYS 525 ? 1_555 ZN ? J ZN . ? B ZN 703 ? 1_555 SG ? B CYS 38 ? B CYS 556 ? 1_555 102.6 ? 29 SG ? B CYS 28 ? B CYS 546 ? 1_555 ZN ? J ZN . ? B ZN 703 ? 1_555 SG ? B CYS 38 ? B CYS 556 ? 1_555 91.8 ? 30 SG ? B CYS 35 ? B CYS 553 ? 1_555 ZN ? J ZN . ? B ZN 703 ? 1_555 SG ? B CYS 38 ? B CYS 556 ? 1_555 119.6 ? 31 SG ? B CYS 21 ? B CYS 539 ? 1_555 ZN ? I ZN . ? B ZN 702 ? 1_555 SG ? B CYS 35 ? B CYS 553 ? 1_555 113.5 ? 32 SG ? B CYS 21 ? B CYS 539 ? 1_555 ZN ? I ZN . ? B ZN 702 ? 1_555 SG ? B CYS 40 ? B CYS 558 ? 1_555 110.0 ? 33 SG ? B CYS 35 ? B CYS 553 ? 1_555 ZN ? I ZN . ? B ZN 702 ? 1_555 SG ? B CYS 40 ? B CYS 558 ? 1_555 113.3 ? 34 SG ? B CYS 21 ? B CYS 539 ? 1_555 ZN ? I ZN . ? B ZN 702 ? 1_555 SG ? B CYS 43 ? B CYS 561 ? 1_555 114.6 ? 35 SG ? B CYS 35 ? B CYS 553 ? 1_555 ZN ? I ZN . ? B ZN 702 ? 1_555 SG ? B CYS 43 ? B CYS 561 ? 1_555 96.6 ? 36 SG ? B CYS 40 ? B CYS 558 ? 1_555 ZN ? I ZN . ? B ZN 702 ? 1_555 SG ? B CYS 43 ? B CYS 561 ? 1_555 108.2 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 701 ? 5 'BINDING SITE FOR RESIDUE ZN A 701' AC2 Software A ZN 702 ? 4 'BINDING SITE FOR RESIDUE ZN A 702' AC3 Software A ZN 703 ? 5 'BINDING SITE FOR RESIDUE ZN A 703' AC4 Software B ZN 701 ? 5 'BINDING SITE FOR RESIDUE ZN B 701' AC5 Software B ZN 702 ? 5 'BINDING SITE FOR RESIDUE ZN B 702' AC6 Software B ZN 703 ? 5 'BINDING SITE FOR RESIDUE ZN B 703' AC7 Software H ZN 702 ? 1 'BINDING SITE FOR RESIDUE ZN H 702' AC8 Software H ZN 703 ? 1 'BINDING SITE FOR RESIDUE ZN H 703' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 CYS A 7 ? CYS A 525 . ? 1_555 ? 2 AC1 5 CYS A 9 ? CYS A 527 . ? 1_555 ? 3 AC1 5 CYS A 21 ? CYS A 539 . ? 1_555 ? 4 AC1 5 CYS A 26 ? CYS A 544 . ? 1_555 ? 5 AC1 5 ZN G . ? ZN A 703 . ? 1_555 ? 6 AC2 4 CYS A 21 ? CYS A 539 . ? 1_555 ? 7 AC2 4 CYS A 35 ? CYS A 553 . ? 1_555 ? 8 AC2 4 CYS A 40 ? CYS A 558 . ? 1_555 ? 9 AC2 4 CYS A 43 ? CYS A 561 . ? 1_555 ? 10 AC3 5 CYS A 7 ? CYS A 525 . ? 1_555 ? 11 AC3 5 CYS A 28 ? CYS A 546 . ? 1_555 ? 12 AC3 5 CYS A 35 ? CYS A 553 . ? 1_555 ? 13 AC3 5 CYS A 38 ? CYS A 556 . ? 1_555 ? 14 AC3 5 ZN E . ? ZN A 701 . ? 1_555 ? 15 AC4 5 CYS B 7 ? CYS B 525 . ? 1_555 ? 16 AC4 5 CYS B 9 ? CYS B 527 . ? 1_555 ? 17 AC4 5 CYS B 21 ? CYS B 539 . ? 1_555 ? 18 AC4 5 CYS B 26 ? CYS B 544 . ? 1_555 ? 19 AC4 5 ZN J . ? ZN B 703 . ? 1_555 ? 20 AC5 5 CYS B 7 ? CYS B 525 . ? 1_555 ? 21 AC5 5 CYS B 21 ? CYS B 539 . ? 1_555 ? 22 AC5 5 CYS B 35 ? CYS B 553 . ? 1_555 ? 23 AC5 5 CYS B 40 ? CYS B 558 . ? 1_555 ? 24 AC5 5 CYS B 43 ? CYS B 561 . ? 1_555 ? 25 AC6 5 CYS B 7 ? CYS B 525 . ? 1_555 ? 26 AC6 5 CYS B 28 ? CYS B 546 . ? 1_555 ? 27 AC6 5 CYS B 35 ? CYS B 553 . ? 1_555 ? 28 AC6 5 CYS B 38 ? CYS B 556 . ? 1_555 ? 29 AC6 5 ZN H . ? ZN B 701 . ? 1_555 ? 30 AC7 1 ZN M . ? ZN H 703 . ? 1_555 ? 31 AC8 1 ZN L . ? ZN H 702 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 THR _pdbx_validate_close_contact.auth_seq_id_1 535 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 NZ _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 LYS _pdbx_validate_close_contact.auth_seq_id_2 562 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" H DC 10 ? ? "C3'" H DC 10 ? ? 1.377 1.419 -0.042 0.006 N 2 1 "O3'" I DC 8 ? ? "C3'" I DC 8 ? ? 1.377 1.419 -0.042 0.006 N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 H _pdbx_validate_rmsd_angle.auth_comp_id_1 DG _pdbx_validate_rmsd_angle.auth_seq_id_1 7 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 H _pdbx_validate_rmsd_angle.auth_comp_id_2 DG _pdbx_validate_rmsd_angle.auth_seq_id_2 7 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N9 _pdbx_validate_rmsd_angle.auth_asym_id_3 H _pdbx_validate_rmsd_angle.auth_comp_id_3 DG _pdbx_validate_rmsd_angle.auth_seq_id_3 7 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 110.35 _pdbx_validate_rmsd_angle.angle_target_value 108.30 _pdbx_validate_rmsd_angle.angle_deviation 2.05 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 524 ? ? -168.33 96.69 2 1 ARG A 526 ? ? -147.44 39.00 3 1 CYS A 553 ? ? -103.32 42.23 4 1 SER B 533 ? ? -173.21 135.35 # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 17.3669 _pdbx_refine_tls.origin_y 0.2768 _pdbx_refine_tls.origin_z 18.9614 _pdbx_refine_tls.T[1][1] 0.5916 _pdbx_refine_tls.T[2][2] 0.6217 _pdbx_refine_tls.T[3][3] 0.5698 _pdbx_refine_tls.T[1][2] -0.0366 _pdbx_refine_tls.T[1][3] 0.0123 _pdbx_refine_tls.T[2][3] -0.0990 _pdbx_refine_tls.L[1][1] 2.3185 _pdbx_refine_tls.L[2][2] 3.7476 _pdbx_refine_tls.L[3][3] 4.0102 _pdbx_refine_tls.L[1][2] -0.0199 _pdbx_refine_tls.L[1][3] -1.4830 _pdbx_refine_tls.L[2][3] 2.0312 _pdbx_refine_tls.S[1][1] 0.0033 _pdbx_refine_tls.S[1][2] -0.3163 _pdbx_refine_tls.S[1][3] 0.2756 _pdbx_refine_tls.S[2][1] 0.3565 _pdbx_refine_tls.S[2][2] -0.2664 _pdbx_refine_tls.S[2][3] 0.5830 _pdbx_refine_tls.S[3][1] 0.1285 _pdbx_refine_tls.S[3][2] 0.2669 _pdbx_refine_tls.S[3][3] 0.1835 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ALL # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 519 ? A SER 1 2 1 Y 1 A PRO 520 ? A PRO 2 3 1 Y 1 A PRO 521 ? A PRO 3 4 1 Y 1 A LYS 522 ? A LYS 4 5 1 Y 1 A SER 530 ? A SER 12 6 1 Y 1 A GLY 531 ? A GLY 13 7 1 Y 1 A SER 532 ? A SER 14 8 1 Y 1 A SER 533 ? A SER 15 9 1 Y 1 A ASN 534 ? A ASN 16 10 1 Y 1 A THR 535 ? A THR 17 11 1 Y 1 A LEU 536 ? A LEU 18 12 1 Y 1 A GLU 567 ? A GLU 49 13 1 Y 1 A ASP 568 ? A ASP 50 14 1 Y 1 A TYR 569 ? A TYR 51 15 1 Y 1 A VAL 570 ? A VAL 52 16 1 Y 1 B SER 519 ? B SER 1 17 1 Y 1 B PRO 520 ? B PRO 2 18 1 Y 1 B PRO 521 ? B PRO 3 19 1 Y 1 B ASP 568 ? B ASP 50 20 1 Y 1 B TYR 569 ? B TYR 51 21 1 Y 1 B VAL 570 ? B VAL 52 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DC OP3 O N N 88 DC P P N N 89 DC OP1 O N N 90 DC OP2 O N N 91 DC "O5'" O N N 92 DC "C5'" C N N 93 DC "C4'" C N R 94 DC "O4'" O N N 95 DC "C3'" C N S 96 DC "O3'" O N N 97 DC "C2'" C N N 98 DC "C1'" C N R 99 DC N1 N N N 100 DC C2 C N N 101 DC O2 O N N 102 DC N3 N N N 103 DC C4 C N N 104 DC N4 N N N 105 DC C5 C N N 106 DC C6 C N N 107 DC HOP3 H N N 108 DC HOP2 H N N 109 DC "H5'" H N N 110 DC "H5''" H N N 111 DC "H4'" H N N 112 DC "H3'" H N N 113 DC "HO3'" H N N 114 DC "H2'" H N N 115 DC "H2''" H N N 116 DC "H1'" H N N 117 DC H41 H N N 118 DC H42 H N N 119 DC H5 H N N 120 DC H6 H N N 121 DG OP3 O N N 122 DG P P N N 123 DG OP1 O N N 124 DG OP2 O N N 125 DG "O5'" O N N 126 DG "C5'" C N N 127 DG "C4'" C N R 128 DG "O4'" O N N 129 DG "C3'" C N S 130 DG "O3'" O N N 131 DG "C2'" C N N 132 DG "C1'" C N R 133 DG N9 N Y N 134 DG C8 C Y N 135 DG N7 N Y N 136 DG C5 C Y N 137 DG C6 C N N 138 DG O6 O N N 139 DG N1 N N N 140 DG C2 C N N 141 DG N2 N N N 142 DG N3 N N N 143 DG C4 C Y N 144 DG HOP3 H N N 145 DG HOP2 H N N 146 DG "H5'" H N N 147 DG "H5''" H N N 148 DG "H4'" H N N 149 DG "H3'" H N N 150 DG "HO3'" H N N 151 DG "H2'" H N N 152 DG "H2''" H N N 153 DG "H1'" H N N 154 DG H8 H N N 155 DG H1 H N N 156 DG H21 H N N 157 DG H22 H N N 158 GLU N N N N 159 GLU CA C N S 160 GLU C C N N 161 GLU O O N N 162 GLU CB C N N 163 GLU CG C N N 164 GLU CD C N N 165 GLU OE1 O N N 166 GLU OE2 O N N 167 GLU OXT O N N 168 GLU H H N N 169 GLU H2 H N N 170 GLU HA H N N 171 GLU HB2 H N N 172 GLU HB3 H N N 173 GLU HG2 H N N 174 GLU HG3 H N N 175 GLU HE2 H N N 176 GLU HXT H N N 177 GLY N N N N 178 GLY CA C N N 179 GLY C C N N 180 GLY O O N N 181 GLY OXT O N N 182 GLY H H N N 183 GLY H2 H N N 184 GLY HA2 H N N 185 GLY HA3 H N N 186 GLY HXT H N N 187 HIS N N N N 188 HIS CA C N S 189 HIS C C N N 190 HIS O O N N 191 HIS CB C N N 192 HIS CG C Y N 193 HIS ND1 N Y N 194 HIS CD2 C Y N 195 HIS CE1 C Y N 196 HIS NE2 N Y N 197 HIS OXT O N N 198 HIS H H N N 199 HIS H2 H N N 200 HIS HA H N N 201 HIS HB2 H N N 202 HIS HB3 H N N 203 HIS HD1 H N N 204 HIS HD2 H N N 205 HIS HE1 H N N 206 HIS HE2 H N N 207 HIS HXT H N N 208 ILE N N N N 209 ILE CA C N S 210 ILE C C N N 211 ILE O O N N 212 ILE CB C N S 213 ILE CG1 C N N 214 ILE CG2 C N N 215 ILE CD1 C N N 216 ILE OXT O N N 217 ILE H H N N 218 ILE H2 H N N 219 ILE HA H N N 220 ILE HB H N N 221 ILE HG12 H N N 222 ILE HG13 H N N 223 ILE HG21 H N N 224 ILE HG22 H N N 225 ILE HG23 H N N 226 ILE HD11 H N N 227 ILE HD12 H N N 228 ILE HD13 H N N 229 ILE HXT H N N 230 LEU N N N N 231 LEU CA C N S 232 LEU C C N N 233 LEU O O N N 234 LEU CB C N N 235 LEU CG C N N 236 LEU CD1 C N N 237 LEU CD2 C N N 238 LEU OXT O N N 239 LEU H H N N 240 LEU H2 H N N 241 LEU HA H N N 242 LEU HB2 H N N 243 LEU HB3 H N N 244 LEU HG H N N 245 LEU HD11 H N N 246 LEU HD12 H N N 247 LEU HD13 H N N 248 LEU HD21 H N N 249 LEU HD22 H N N 250 LEU HD23 H N N 251 LEU HXT H N N 252 LYS N N N N 253 LYS CA C N S 254 LYS C C N N 255 LYS O O N N 256 LYS CB C N N 257 LYS CG C N N 258 LYS CD C N N 259 LYS CE C N N 260 LYS NZ N N N 261 LYS OXT O N N 262 LYS H H N N 263 LYS H2 H N N 264 LYS HA H N N 265 LYS HB2 H N N 266 LYS HB3 H N N 267 LYS HG2 H N N 268 LYS HG3 H N N 269 LYS HD2 H N N 270 LYS HD3 H N N 271 LYS HE2 H N N 272 LYS HE3 H N N 273 LYS HZ1 H N N 274 LYS HZ2 H N N 275 LYS HZ3 H N N 276 LYS HXT H N N 277 PRO N N N N 278 PRO CA C N S 279 PRO C C N N 280 PRO O O N N 281 PRO CB C N N 282 PRO CG C N N 283 PRO CD C N N 284 PRO OXT O N N 285 PRO H H N N 286 PRO HA H N N 287 PRO HB2 H N N 288 PRO HB3 H N N 289 PRO HG2 H N N 290 PRO HG3 H N N 291 PRO HD2 H N N 292 PRO HD3 H N N 293 PRO HXT H N N 294 SER N N N N 295 SER CA C N S 296 SER C C N N 297 SER O O N N 298 SER CB C N N 299 SER OG O N N 300 SER OXT O N N 301 SER H H N N 302 SER H2 H N N 303 SER HA H N N 304 SER HB2 H N N 305 SER HB3 H N N 306 SER HG H N N 307 SER HXT H N N 308 THR N N N N 309 THR CA C N S 310 THR C C N N 311 THR O O N N 312 THR CB C N R 313 THR OG1 O N N 314 THR CG2 C N N 315 THR OXT O N N 316 THR H H N N 317 THR H2 H N N 318 THR HA H N N 319 THR HB H N N 320 THR HG1 H N N 321 THR HG21 H N N 322 THR HG22 H N N 323 THR HG23 H N N 324 THR HXT H N N 325 TYR N N N N 326 TYR CA C N S 327 TYR C C N N 328 TYR O O N N 329 TYR CB C N N 330 TYR CG C Y N 331 TYR CD1 C Y N 332 TYR CD2 C Y N 333 TYR CE1 C Y N 334 TYR CE2 C Y N 335 TYR CZ C Y N 336 TYR OH O N N 337 TYR OXT O N N 338 TYR H H N N 339 TYR H2 H N N 340 TYR HA H N N 341 TYR HB2 H N N 342 TYR HB3 H N N 343 TYR HD1 H N N 344 TYR HD2 H N N 345 TYR HE1 H N N 346 TYR HE2 H N N 347 TYR HH H N N 348 TYR HXT H N N 349 VAL N N N N 350 VAL CA C N S 351 VAL C C N N 352 VAL O O N N 353 VAL CB C N N 354 VAL CG1 C N N 355 VAL CG2 C N N 356 VAL OXT O N N 357 VAL H H N N 358 VAL H2 H N N 359 VAL HA H N N 360 VAL HB H N N 361 VAL HG11 H N N 362 VAL HG12 H N N 363 VAL HG13 H N N 364 VAL HG21 H N N 365 VAL HG22 H N N 366 VAL HG23 H N N 367 VAL HXT H N N 368 ZN ZN ZN N N 369 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DC OP3 P sing N N 83 DC OP3 HOP3 sing N N 84 DC P OP1 doub N N 85 DC P OP2 sing N N 86 DC P "O5'" sing N N 87 DC OP2 HOP2 sing N N 88 DC "O5'" "C5'" sing N N 89 DC "C5'" "C4'" sing N N 90 DC "C5'" "H5'" sing N N 91 DC "C5'" "H5''" sing N N 92 DC "C4'" "O4'" sing N N 93 DC "C4'" "C3'" sing N N 94 DC "C4'" "H4'" sing N N 95 DC "O4'" "C1'" sing N N 96 DC "C3'" "O3'" sing N N 97 DC "C3'" "C2'" sing N N 98 DC "C3'" "H3'" sing N N 99 DC "O3'" "HO3'" sing N N 100 DC "C2'" "C1'" sing N N 101 DC "C2'" "H2'" sing N N 102 DC "C2'" "H2''" sing N N 103 DC "C1'" N1 sing N N 104 DC "C1'" "H1'" sing N N 105 DC N1 C2 sing N N 106 DC N1 C6 sing N N 107 DC C2 O2 doub N N 108 DC C2 N3 sing N N 109 DC N3 C4 doub N N 110 DC C4 N4 sing N N 111 DC C4 C5 sing N N 112 DC N4 H41 sing N N 113 DC N4 H42 sing N N 114 DC C5 C6 doub N N 115 DC C5 H5 sing N N 116 DC C6 H6 sing N N 117 DG OP3 P sing N N 118 DG OP3 HOP3 sing N N 119 DG P OP1 doub N N 120 DG P OP2 sing N N 121 DG P "O5'" sing N N 122 DG OP2 HOP2 sing N N 123 DG "O5'" "C5'" sing N N 124 DG "C5'" "C4'" sing N N 125 DG "C5'" "H5'" sing N N 126 DG "C5'" "H5''" sing N N 127 DG "C4'" "O4'" sing N N 128 DG "C4'" "C3'" sing N N 129 DG "C4'" "H4'" sing N N 130 DG "O4'" "C1'" sing N N 131 DG "C3'" "O3'" sing N N 132 DG "C3'" "C2'" sing N N 133 DG "C3'" "H3'" sing N N 134 DG "O3'" "HO3'" sing N N 135 DG "C2'" "C1'" sing N N 136 DG "C2'" "H2'" sing N N 137 DG "C2'" "H2''" sing N N 138 DG "C1'" N9 sing N N 139 DG "C1'" "H1'" sing N N 140 DG N9 C8 sing Y N 141 DG N9 C4 sing Y N 142 DG C8 N7 doub Y N 143 DG C8 H8 sing N N 144 DG N7 C5 sing Y N 145 DG C5 C6 sing N N 146 DG C5 C4 doub Y N 147 DG C6 O6 doub N N 148 DG C6 N1 sing N N 149 DG N1 C2 sing N N 150 DG N1 H1 sing N N 151 DG C2 N2 sing N N 152 DG C2 N3 doub N N 153 DG N2 H21 sing N N 154 DG N2 H22 sing N N 155 DG N3 C4 sing N N 156 GLU N CA sing N N 157 GLU N H sing N N 158 GLU N H2 sing N N 159 GLU CA C sing N N 160 GLU CA CB sing N N 161 GLU CA HA sing N N 162 GLU C O doub N N 163 GLU C OXT sing N N 164 GLU CB CG sing N N 165 GLU CB HB2 sing N N 166 GLU CB HB3 sing N N 167 GLU CG CD sing N N 168 GLU CG HG2 sing N N 169 GLU CG HG3 sing N N 170 GLU CD OE1 doub N N 171 GLU CD OE2 sing N N 172 GLU OE2 HE2 sing N N 173 GLU OXT HXT sing N N 174 GLY N CA sing N N 175 GLY N H sing N N 176 GLY N H2 sing N N 177 GLY CA C sing N N 178 GLY CA HA2 sing N N 179 GLY CA HA3 sing N N 180 GLY C O doub N N 181 GLY C OXT sing N N 182 GLY OXT HXT sing N N 183 HIS N CA sing N N 184 HIS N H sing N N 185 HIS N H2 sing N N 186 HIS CA C sing N N 187 HIS CA CB sing N N 188 HIS CA HA sing N N 189 HIS C O doub N N 190 HIS C OXT sing N N 191 HIS CB CG sing N N 192 HIS CB HB2 sing N N 193 HIS CB HB3 sing N N 194 HIS CG ND1 sing Y N 195 HIS CG CD2 doub Y N 196 HIS ND1 CE1 doub Y N 197 HIS ND1 HD1 sing N N 198 HIS CD2 NE2 sing Y N 199 HIS CD2 HD2 sing N N 200 HIS CE1 NE2 sing Y N 201 HIS CE1 HE1 sing N N 202 HIS NE2 HE2 sing N N 203 HIS OXT HXT sing N N 204 ILE N CA sing N N 205 ILE N H sing N N 206 ILE N H2 sing N N 207 ILE CA C sing N N 208 ILE CA CB sing N N 209 ILE CA HA sing N N 210 ILE C O doub N N 211 ILE C OXT sing N N 212 ILE CB CG1 sing N N 213 ILE CB CG2 sing N N 214 ILE CB HB sing N N 215 ILE CG1 CD1 sing N N 216 ILE CG1 HG12 sing N N 217 ILE CG1 HG13 sing N N 218 ILE CG2 HG21 sing N N 219 ILE CG2 HG22 sing N N 220 ILE CG2 HG23 sing N N 221 ILE CD1 HD11 sing N N 222 ILE CD1 HD12 sing N N 223 ILE CD1 HD13 sing N N 224 ILE OXT HXT sing N N 225 LEU N CA sing N N 226 LEU N H sing N N 227 LEU N H2 sing N N 228 LEU CA C sing N N 229 LEU CA CB sing N N 230 LEU CA HA sing N N 231 LEU C O doub N N 232 LEU C OXT sing N N 233 LEU CB CG sing N N 234 LEU CB HB2 sing N N 235 LEU CB HB3 sing N N 236 LEU CG CD1 sing N N 237 LEU CG CD2 sing N N 238 LEU CG HG sing N N 239 LEU CD1 HD11 sing N N 240 LEU CD1 HD12 sing N N 241 LEU CD1 HD13 sing N N 242 LEU CD2 HD21 sing N N 243 LEU CD2 HD22 sing N N 244 LEU CD2 HD23 sing N N 245 LEU OXT HXT sing N N 246 LYS N CA sing N N 247 LYS N H sing N N 248 LYS N H2 sing N N 249 LYS CA C sing N N 250 LYS CA CB sing N N 251 LYS CA HA sing N N 252 LYS C O doub N N 253 LYS C OXT sing N N 254 LYS CB CG sing N N 255 LYS CB HB2 sing N N 256 LYS CB HB3 sing N N 257 LYS CG CD sing N N 258 LYS CG HG2 sing N N 259 LYS CG HG3 sing N N 260 LYS CD CE sing N N 261 LYS CD HD2 sing N N 262 LYS CD HD3 sing N N 263 LYS CE NZ sing N N 264 LYS CE HE2 sing N N 265 LYS CE HE3 sing N N 266 LYS NZ HZ1 sing N N 267 LYS NZ HZ2 sing N N 268 LYS NZ HZ3 sing N N 269 LYS OXT HXT sing N N 270 PRO N CA sing N N 271 PRO N CD sing N N 272 PRO N H sing N N 273 PRO CA C sing N N 274 PRO CA CB sing N N 275 PRO CA HA sing N N 276 PRO C O doub N N 277 PRO C OXT sing N N 278 PRO CB CG sing N N 279 PRO CB HB2 sing N N 280 PRO CB HB3 sing N N 281 PRO CG CD sing N N 282 PRO CG HG2 sing N N 283 PRO CG HG3 sing N N 284 PRO CD HD2 sing N N 285 PRO CD HD3 sing N N 286 PRO OXT HXT sing N N 287 SER N CA sing N N 288 SER N H sing N N 289 SER N H2 sing N N 290 SER CA C sing N N 291 SER CA CB sing N N 292 SER CA HA sing N N 293 SER C O doub N N 294 SER C OXT sing N N 295 SER CB OG sing N N 296 SER CB HB2 sing N N 297 SER CB HB3 sing N N 298 SER OG HG sing N N 299 SER OXT HXT sing N N 300 THR N CA sing N N 301 THR N H sing N N 302 THR N H2 sing N N 303 THR CA C sing N N 304 THR CA CB sing N N 305 THR CA HA sing N N 306 THR C O doub N N 307 THR C OXT sing N N 308 THR CB OG1 sing N N 309 THR CB CG2 sing N N 310 THR CB HB sing N N 311 THR OG1 HG1 sing N N 312 THR CG2 HG21 sing N N 313 THR CG2 HG22 sing N N 314 THR CG2 HG23 sing N N 315 THR OXT HXT sing N N 316 TYR N CA sing N N 317 TYR N H sing N N 318 TYR N H2 sing N N 319 TYR CA C sing N N 320 TYR CA CB sing N N 321 TYR CA HA sing N N 322 TYR C O doub N N 323 TYR C OXT sing N N 324 TYR CB CG sing N N 325 TYR CB HB2 sing N N 326 TYR CB HB3 sing N N 327 TYR CG CD1 doub Y N 328 TYR CG CD2 sing Y N 329 TYR CD1 CE1 sing Y N 330 TYR CD1 HD1 sing N N 331 TYR CD2 CE2 doub Y N 332 TYR CD2 HD2 sing N N 333 TYR CE1 CZ doub Y N 334 TYR CE1 HE1 sing N N 335 TYR CE2 CZ sing Y N 336 TYR CE2 HE2 sing N N 337 TYR CZ OH sing N N 338 TYR OH HH sing N N 339 TYR OXT HXT sing N N 340 VAL N CA sing N N 341 VAL N H sing N N 342 VAL N H2 sing N N 343 VAL CA C sing N N 344 VAL CA CB sing N N 345 VAL CA HA sing N N 346 VAL C O doub N N 347 VAL C OXT sing N N 348 VAL CB CG1 sing N N 349 VAL CB CG2 sing N N 350 VAL CB HB sing N N 351 VAL CG1 HG11 sing N N 352 VAL CG1 HG12 sing N N 353 VAL CG1 HG13 sing N N 354 VAL CG2 HG21 sing N N 355 VAL CG2 HG22 sing N N 356 VAL CG2 HG23 sing N N 357 VAL OXT HXT sing N N 358 # _ndb_struct_conf_na.entry_id 4RKG _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DG 1 1_555 D DC 12 1_555 -0.790 -0.182 0.109 -0.515 -2.368 5.352 1 H_DG1:DC12_I H 1 ? I 12 ? 19 1 1 C DC 2 1_555 D DG 11 1_555 0.129 -0.235 0.279 -2.122 -8.010 -2.392 2 H_DC2:DG11_I H 2 ? I 11 ? 19 1 1 C DG 3 1_555 D DC 10 1_555 -0.362 -0.244 0.293 1.383 -8.766 0.963 3 H_DG3:DC10_I H 3 ? I 10 ? 19 1 1 C DC 4 1_555 D DG 9 1_555 0.288 -0.053 0.540 -8.061 -16.537 -4.161 4 H_DC4:DG9_I H 4 ? I 9 ? 19 1 1 C DG 5 1_555 D DC 8 1_555 -0.178 0.019 -0.060 -0.450 -2.453 1.089 5 H_DG5:DC8_I H 5 ? I 8 ? 19 1 1 C DC 6 1_555 D DG 7 1_555 0.064 -0.042 -0.002 2.781 -12.288 1.385 6 H_DC6:DG7_I H 6 ? I 7 ? 19 1 1 C DG 7 1_555 D DC 6 1_555 0.174 -0.188 0.164 5.351 -10.397 -0.321 7 H_DG7:DC6_I H 7 ? I 6 ? 19 1 1 C DC 8 1_555 D DG 5 1_555 -0.224 -0.038 0.850 -6.064 -7.055 -4.181 8 H_DC8:DG5_I H 8 ? I 5 ? 19 1 1 C DG 9 1_555 D DC 4 1_555 0.216 -0.089 0.449 3.084 -6.489 2.854 9 H_DG9:DC4_I H 9 ? I 4 ? 19 1 1 C DC 10 1_555 D DG 3 1_555 -0.218 -0.301 0.382 2.918 -10.816 -2.405 10 H_DC10:DG3_I H 10 ? I 3 ? 19 1 1 C DG 11 1_555 D DC 2 1_555 -0.210 0.341 0.687 12.193 -3.725 5.546 11 H_DG11:DC2_I H 11 ? I 2 ? ? 1 1 C DC 12 1_555 D DG 1 1_555 -0.106 0.496 -0.222 8.464 -4.530 1.290 12 H_DC12:DG1_I H 12 ? I 1 ? ? 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DG 1 1_555 D DC 12 1_555 C DC 2 1_555 D DG 11 1_555 -0.923 -0.078 3.414 -2.668 -2.529 34.998 0.268 1.107 3.469 -4.191 4.422 35.185 1 HH_DG1DC2:DG11DC12_II H 1 ? I 12 ? H 2 ? I 11 ? 1 C DC 2 1_555 D DG 11 1_555 C DG 3 1_555 D DC 10 1_555 0.546 0.767 3.139 2.128 4.539 35.625 0.609 -0.587 3.235 7.374 -3.457 35.965 2 HH_DC2DG3:DC10DG11_II H 2 ? I 11 ? H 3 ? I 10 ? 1 C DG 3 1_555 D DC 10 1_555 C DC 4 1_555 D DG 9 1_555 -0.529 -0.028 3.614 -2.852 -2.102 39.897 0.226 0.410 3.638 -3.072 4.170 40.048 3 HH_DG3DC4:DG9DC10_II H 3 ? I 10 ? H 4 ? I 9 ? 1 C DC 4 1_555 D DG 9 1_555 C DG 5 1_555 D DC 8 1_555 1.224 0.828 3.244 6.565 1.898 34.278 1.083 -1.013 3.452 3.180 -11.003 34.932 4 HH_DC4DG5:DC8DG9_II H 4 ? I 9 ? H 5 ? I 8 ? 1 C DG 5 1_555 D DC 8 1_555 C DC 6 1_555 D DG 7 1_555 -0.853 0.425 3.252 -2.293 2.042 32.962 0.399 1.107 3.321 3.590 4.031 33.101 5 HH_DG5DC6:DG7DC8_II H 5 ? I 8 ? H 6 ? I 7 ? 1 C DC 6 1_555 D DG 7 1_555 C DG 7 1_555 D DC 6 1_555 0.718 0.960 3.274 1.130 7.709 37.192 0.459 -0.954 3.418 11.927 -1.748 37.971 6 HH_DC6DG7:DC6DG7_II H 6 ? I 7 ? H 7 ? I 6 ? 1 C DG 7 1_555 D DC 6 1_555 C DC 8 1_555 D DG 5 1_555 -0.926 0.136 3.757 -8.180 -2.519 36.687 0.596 0.183 3.851 -3.936 12.782 37.639 7 HH_DG7DC8:DG5DC6_II H 7 ? I 6 ? H 8 ? I 5 ? 1 C DC 8 1_555 D DG 5 1_555 C DG 9 1_555 D DC 4 1_555 1.223 1.042 3.102 6.954 -0.712 40.502 1.560 -1.004 3.242 -1.019 -9.955 41.075 8 HH_DC8DG9:DC4DG5_II H 8 ? I 5 ? H 9 ? I 4 ? 1 C DG 9 1_555 D DC 4 1_555 C DC 10 1_555 D DG 3 1_555 -0.601 1.127 3.547 -0.129 0.197 31.429 2.040 1.084 3.556 0.364 0.238 31.430 9 HH_DG9DC10:DG3DC4_II H 9 ? I 4 ? H 10 ? I 3 ? 1 C DC 10 1_555 D DG 3 1_555 C DG 11 1_555 D DC 2 1_555 0.565 0.980 3.052 -1.494 3.147 36.006 1.161 -1.109 3.099 5.077 2.411 36.169 10 HH_DC10DG11:DC2DG3_II H 10 ? I 3 ? H 11 ? I 2 ? 1 C DG 11 1_555 D DC 2 1_555 C DC 12 1_555 D DG 1 1_555 0.236 -0.101 3.491 5.685 0.110 33.928 -0.190 0.553 3.483 0.186 -9.658 34.388 11 HH_DG11DC12:DG1DC2_II H 11 ? I 2 ? H 12 ? I 1 ? # _atom_sites.entry_id 4RKG _atom_sites.fract_transf_matrix[1][1] 0.024567 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013289 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012914 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S ZN # loop_