HEADER TRANSFERASE 14-OCT-14 4RKZ TITLE CRYSTAL STRUCTURE OF MEVALONATE-3-KINASE FROM THERMOPLASMA ACIDOPHILUM TITLE 2 (MEVALONATE 3-PHOSPHATE/ADP BOUND) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN TA1305; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MEVALONATE-3-KINASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOPLASMA ACIDOPHILUM; SOURCE 3 ORGANISM_TAXID: 273075; SOURCE 4 STRAIN: ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165; SOURCE 5 GENE: TA1305; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS MEVALONATE, MEVALONATE-3-KINASE, MEVALONATE PYROPHOSPHATE KEYWDS 2 DECARBOXYLASE, MEVALONATE DIPHOSPHATE DECARBOXYLASE, MEVALONIC ACID, KEYWDS 3 MEVALONATE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.VINOKUR,D.CASCIO,M.R.SAWAYA,J.U.BOWIE REVDAT 3 20-SEP-23 4RKZ 1 REMARK SEQADV REVDAT 2 11-FEB-15 4RKZ 1 JRNL REVDAT 1 10-DEC-14 4RKZ 0 JRNL AUTH J.M.VINOKUR,T.P.KORMAN,M.R.SAWAYA,M.COLLAZO,D.CASCIO, JRNL AUTH 2 J.U.BOWIE JRNL TITL STRUCTURAL ANALYSIS OF MEVALONATE-3-KINASE PROVIDES INSIGHT JRNL TITL 2 INTO THE MECHANISMS OF ISOPRENOID PATHWAY DECARBOXYLASES. JRNL REF PROTEIN SCI. V. 24 212 2015 JRNL REFN ISSN 0961-8368 JRNL PMID 25422158 JRNL DOI 10.1002/PRO.2607 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1555 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 86.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 34194 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3418 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 86.9526 - 6.6335 0.99 1338 149 0.1687 0.1869 REMARK 3 2 6.6335 - 5.2654 1.00 1314 146 0.1912 0.2614 REMARK 3 3 5.2654 - 4.5999 0.98 1291 143 0.1674 0.1993 REMARK 3 4 4.5999 - 4.1793 1.00 1283 143 0.1570 0.2016 REMARK 3 5 4.1793 - 3.8798 0.99 1284 143 0.1706 0.2363 REMARK 3 6 3.8798 - 3.6510 1.00 1293 143 0.1901 0.2330 REMARK 3 7 3.6510 - 3.4682 1.00 1273 142 0.2011 0.2564 REMARK 3 8 3.4682 - 3.3172 1.00 1295 144 0.2159 0.2444 REMARK 3 9 3.3172 - 3.1895 0.99 1269 141 0.2289 0.2853 REMARK 3 10 3.1895 - 3.0794 0.99 1272 141 0.2416 0.2876 REMARK 3 11 3.0794 - 2.9831 1.00 1313 146 0.2216 0.2719 REMARK 3 12 2.9831 - 2.8978 0.99 1250 139 0.2383 0.2797 REMARK 3 13 2.8978 - 2.8216 1.00 1282 142 0.2494 0.3198 REMARK 3 14 2.8216 - 2.7527 1.00 1280 143 0.2405 0.2761 REMARK 3 15 2.7527 - 2.6901 0.99 1286 143 0.2481 0.3127 REMARK 3 16 2.6901 - 2.6329 1.00 1275 141 0.2354 0.3205 REMARK 3 17 2.6329 - 2.5802 1.00 1286 143 0.2512 0.3312 REMARK 3 18 2.5802 - 2.5315 0.99 1242 139 0.2532 0.3172 REMARK 3 19 2.5315 - 2.4863 0.99 1282 142 0.2601 0.3180 REMARK 3 20 2.4863 - 2.4441 1.00 1257 140 0.2817 0.3375 REMARK 3 21 2.4441 - 2.4047 0.99 1252 140 0.2844 0.3934 REMARK 3 22 2.4047 - 2.3677 0.99 1317 144 0.2927 0.3669 REMARK 3 23 2.3677 - 2.3329 1.00 1259 139 0.3093 0.3541 REMARK 3 24 2.3329 - 2.3000 1.00 1283 142 0.3195 0.4178 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4923 REMARK 3 ANGLE : 0.672 6701 REMARK 3 CHIRALITY : 0.025 747 REMARK 3 PLANARITY : 0.002 855 REMARK 3 DIHEDRAL : 12.010 1688 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2794 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RKZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087476. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34215 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 86.891 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 15.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.63000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4RKP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROCOMPLEX CONDITION 68, (QUIAGEN CAT REMARK 280 NO. 135468A) 0.1 M SODIUM ACETATE PH 5.0, 1.0 M AMMONIUM SULFATE REMARK 280 (2:1 PROTEIN:RESERVOIR RATIO), SOAKED IN 5 MM MEVALONATE 3- REMARK 280 PHOSPHATE AND ADP GENERATED ENZYMATICALLY, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 73.18500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.53000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 73.18500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.53000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASP A 69 REMARK 465 ASP A 70 REMARK 465 ASN A 71 REMARK 465 ARG A 72 REMARK 465 MET B -18 REMARK 465 GLY B -17 REMARK 465 SER B -16 REMARK 465 SER B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 SER B -8 REMARK 465 SER B -7 REMARK 465 GLY B -6 REMARK 465 LEU B -5 REMARK 465 VAL B -4 REMARK 465 PRO B -3 REMARK 465 ARG B -2 REMARK 465 THR B 68 REMARK 465 ASP B 69 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 75 NE CZ NH1 NH2 REMARK 470 ARG A 76 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 79 CG OD1 OD2 REMARK 470 ARG A 80 CD NE CZ NH1 NH2 REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 GLU A 87 CG CD OE1 OE2 REMARK 470 LYS A 92 CD CE NZ REMARK 470 GLU A 169 CG CD OE1 OE2 REMARK 470 ASP A 182 CG OD1 OD2 REMARK 470 GLN A 184 CG CD OE1 NE2 REMARK 470 ASP A 199 CG OD1 OD2 REMARK 470 LYS A 206 CG CD CE NZ REMARK 470 GLU A 210 CG CD OE1 OE2 REMARK 470 GLU A 233 CD OE1 OE2 REMARK 470 GLU A 252 CG CD OE1 OE2 REMARK 470 LYS A 256 CG CD CE NZ REMARK 470 LYS A 262 CD CE NZ REMARK 470 LYS A 266 CG CD CE NZ REMARK 470 GLU A 287 CD OE1 OE2 REMARK 470 GLU A 296 CG CD OE1 OE2 REMARK 470 LYS A 302 CD CE NZ REMARK 470 ARG A 307 CD NE CZ NH1 NH2 REMARK 470 VAL B 26 CG1 CG2 REMARK 470 GLU B 56 CG CD OE1 OE2 REMARK 470 ASP B 70 CB CG OD1 OD2 REMARK 470 ARG B 72 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 76 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 80 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 87 CD OE1 OE2 REMARK 470 LYS B 92 CD CE NZ REMARK 470 GLN B 99 CD OE1 NE2 REMARK 470 ASP B 167 CG OD1 OD2 REMARK 470 ASP B 182 CG OD1 OD2 REMARK 470 ARG B 197 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 206 CG CD CE NZ REMARK 470 GLU B 233 CG CD OE1 OE2 REMARK 470 ILE B 241 CD1 REMARK 470 GLN B 255 CG CD OE1 NE2 REMARK 470 LYS B 262 CG CD CE NZ REMARK 470 LEU B 263 CD1 CD2 REMARK 470 LYS B 266 CG CD CE NZ REMARK 470 GLU B 287 CG CD OE1 OE2 REMARK 470 ILE B 295 CG1 CG2 CD1 REMARK 470 GLU B 296 CG CD OE1 OE2 REMARK 470 LYS B 302 CD CE NZ REMARK 470 ARG B 315 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 104 -95.69 -86.57 REMARK 500 THR A 275 -127.19 -87.66 REMARK 500 SER A 278 52.49 -95.98 REMARK 500 VAL B 26 -62.27 -90.10 REMARK 500 LEU B 104 -99.09 -92.59 REMARK 500 THR B 275 -138.45 -84.00 REMARK 500 SER B 278 47.83 -82.62 REMARK 500 ILE B 295 132.65 -39.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3S4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3S4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RKP RELATED DB: PDB REMARK 900 RELATED ID: 4RKS RELATED DB: PDB DBREF 4RKZ A 1 318 UNP Q9HIN1 Q9HIN1_THEAC 1 318 DBREF 4RKZ B 1 318 UNP Q9HIN1 Q9HIN1_THEAC 1 318 SEQADV 4RKZ MET A -18 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ GLY A -17 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ SER A -16 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ SER A -15 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ HIS A -14 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ HIS A -13 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ HIS A -12 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ HIS A -11 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ HIS A -10 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ HIS A -9 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ SER A -8 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ SER A -7 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ GLY A -6 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ LEU A -5 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ VAL A -4 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ PRO A -3 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ ARG A -2 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ GLY A -1 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ SER A 0 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ MET B -18 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ GLY B -17 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ SER B -16 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ SER B -15 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ HIS B -14 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ HIS B -13 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ HIS B -12 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ HIS B -11 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ HIS B -10 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ HIS B -9 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ SER B -8 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ SER B -7 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ GLY B -6 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ LEU B -5 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ VAL B -4 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ PRO B -3 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ ARG B -2 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ GLY B -1 UNP Q9HIN1 EXPRESSION TAG SEQADV 4RKZ SER B 0 UNP Q9HIN1 EXPRESSION TAG SEQRES 1 A 337 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 337 LEU VAL PRO ARG GLY SER MET THR TYR ARG SER ILE GLY SEQRES 3 A 337 SER THR ALA TYR PRO THR ILE GLY VAL VAL LEU LEU GLY SEQRES 4 A 337 GLY ILE ALA ASN PRO VAL THR ARG THR PRO LEU HIS THR SEQRES 5 A 337 SER ALA GLY ILE ALA TYR SER ASP SER CYS GLY SER ILE SEQRES 6 A 337 ARG SER GLU THR ARG ILE TYR ALA ASP GLU ALA THR HIS SEQRES 7 A 337 ILE TYR PHE ASN GLY THR GLU SER THR ASP ASP ASN ARG SEQRES 8 A 337 SER VAL ARG ARG VAL LEU ASP ARG TYR SER SER VAL PHE SEQRES 9 A 337 GLU GLU ALA PHE GLY THR LYS THR VAL SER TYR SER SER SEQRES 10 A 337 GLN ASN PHE GLY ILE LEU SER GLY SER SER ASP ALA GLY SEQRES 11 A 337 ALA ALA SER ILE GLY ALA ALA ILE LEU GLY LEU LYS PRO SEQRES 12 A 337 ASP LEU ASP PRO HIS ASP VAL GLU ASN ASP LEU ARG ALA SEQRES 13 A 337 VAL SER GLU SER ALA GLY ARG SER LEU PHE GLY GLY LEU SEQRES 14 A 337 THR ILE THR TRP SER ASP GLY PHE HIS ALA TYR THR GLU SEQRES 15 A 337 LYS ILE LEU ASP PRO GLU ALA PHE SER GLY TYR SER ILE SEQRES 16 A 337 VAL ALA PHE ALA PHE ASP TYR GLN ARG ASN PRO SER ASP SEQRES 17 A 337 VAL ILE HIS GLN ASN ILE VAL ARG SER ASP LEU TYR PRO SEQRES 18 A 337 ALA ARG LYS LYS HIS ALA ASP GLU HIS ALA HIS MET ILE SEQRES 19 A 337 LYS GLU TYR ALA LYS THR ASN ASP ILE LYS GLY ILE PHE SEQRES 20 A 337 ASP LEU ALA GLN GLU ASP THR GLU GLU TYR HIS SER ILE SEQRES 21 A 337 LEU ARG GLY VAL GLY VAL ASN VAL ILE ARG GLU ASN MET SEQRES 22 A 337 GLN LYS LEU ILE SER TYR LEU LYS LEU ILE ARG LYS ASP SEQRES 23 A 337 TYR TRP ASN ALA TYR ILE VAL THR GLY GLY SER ASN VAL SEQRES 24 A 337 TYR VAL ALA VAL GLU SER GLU ASN ALA ASP ARG LEU PHE SEQRES 25 A 337 SER ILE GLU ASN THR PHE GLY SER LYS LYS LYS MET LEU SEQRES 26 A 337 ARG ILE VAL GLY GLY ALA TRP HIS ARG ARG PRO GLU SEQRES 1 B 337 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 337 LEU VAL PRO ARG GLY SER MET THR TYR ARG SER ILE GLY SEQRES 3 B 337 SER THR ALA TYR PRO THR ILE GLY VAL VAL LEU LEU GLY SEQRES 4 B 337 GLY ILE ALA ASN PRO VAL THR ARG THR PRO LEU HIS THR SEQRES 5 B 337 SER ALA GLY ILE ALA TYR SER ASP SER CYS GLY SER ILE SEQRES 6 B 337 ARG SER GLU THR ARG ILE TYR ALA ASP GLU ALA THR HIS SEQRES 7 B 337 ILE TYR PHE ASN GLY THR GLU SER THR ASP ASP ASN ARG SEQRES 8 B 337 SER VAL ARG ARG VAL LEU ASP ARG TYR SER SER VAL PHE SEQRES 9 B 337 GLU GLU ALA PHE GLY THR LYS THR VAL SER TYR SER SER SEQRES 10 B 337 GLN ASN PHE GLY ILE LEU SER GLY SER SER ASP ALA GLY SEQRES 11 B 337 ALA ALA SER ILE GLY ALA ALA ILE LEU GLY LEU LYS PRO SEQRES 12 B 337 ASP LEU ASP PRO HIS ASP VAL GLU ASN ASP LEU ARG ALA SEQRES 13 B 337 VAL SER GLU SER ALA GLY ARG SER LEU PHE GLY GLY LEU SEQRES 14 B 337 THR ILE THR TRP SER ASP GLY PHE HIS ALA TYR THR GLU SEQRES 15 B 337 LYS ILE LEU ASP PRO GLU ALA PHE SER GLY TYR SER ILE SEQRES 16 B 337 VAL ALA PHE ALA PHE ASP TYR GLN ARG ASN PRO SER ASP SEQRES 17 B 337 VAL ILE HIS GLN ASN ILE VAL ARG SER ASP LEU TYR PRO SEQRES 18 B 337 ALA ARG LYS LYS HIS ALA ASP GLU HIS ALA HIS MET ILE SEQRES 19 B 337 LYS GLU TYR ALA LYS THR ASN ASP ILE LYS GLY ILE PHE SEQRES 20 B 337 ASP LEU ALA GLN GLU ASP THR GLU GLU TYR HIS SER ILE SEQRES 21 B 337 LEU ARG GLY VAL GLY VAL ASN VAL ILE ARG GLU ASN MET SEQRES 22 B 337 GLN LYS LEU ILE SER TYR LEU LYS LEU ILE ARG LYS ASP SEQRES 23 B 337 TYR TRP ASN ALA TYR ILE VAL THR GLY GLY SER ASN VAL SEQRES 24 B 337 TYR VAL ALA VAL GLU SER GLU ASN ALA ASP ARG LEU PHE SEQRES 25 B 337 SER ILE GLU ASN THR PHE GLY SER LYS LYS LYS MET LEU SEQRES 26 B 337 ARG ILE VAL GLY GLY ALA TRP HIS ARG ARG PRO GLU HET ADP A 401 27 HET 3S4 A 402 14 HET SO4 A 403 5 HET 3S4 B 401 14 HET SO4 B 402 5 HET SO4 B 403 5 HET SO4 B 404 5 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM 3S4 (3R)-5-HYDROXY-3-METHYL-3-(PHOSPHONOOXY)PENTANOIC ACID HETNAM SO4 SULFATE ION FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 3S4 2(C6 H13 O7 P) FORMUL 5 SO4 4(O4 S 2-) FORMUL 10 HOH *40(H2 O) HELIX 1 1 VAL A 74 TYR A 81 1 8 HELIX 2 2 TYR A 81 GLY A 90 1 10 HELIX 3 3 GLY A 106 LYS A 123 1 18 HELIX 4 4 ASP A 127 ARG A 136 1 10 HELIX 5 5 SER A 141 GLY A 148 1 8 HELIX 6 6 ASP A 167 SER A 172 5 6 HELIX 7 7 PRO A 187 VAL A 196 1 10 HELIX 8 8 LEU A 200 THR A 221 1 22 HELIX 9 9 ASP A 223 GLY A 244 1 22 HELIX 10 10 ARG A 251 TYR A 268 1 18 HELIX 11 11 ASN A 288 SER A 294 1 7 HELIX 12 12 ASN B 71 TYR B 81 1 11 HELIX 13 13 TYR B 81 PHE B 89 1 9 HELIX 14 14 GLY B 106 LYS B 123 1 18 HELIX 15 15 ASP B 127 ARG B 136 1 10 HELIX 16 16 SER B 141 GLY B 148 1 8 HELIX 17 17 ASP B 167 SER B 172 5 6 HELIX 18 18 PRO B 187 VAL B 196 1 10 HELIX 19 19 LEU B 200 THR B 221 1 22 HELIX 20 20 ASP B 223 GLY B 244 1 22 HELIX 21 21 ARG B 251 LYS B 266 1 16 HELIX 22 22 ASN B 288 SER B 294 1 7 SHEET 1 A 6 THR A 65 SER A 67 0 SHEET 2 A 6 ILE A 60 PHE A 62 -1 N ILE A 60 O SER A 67 SHEET 3 A 6 VAL A 94 PHE A 101 1 O SER A 98 N TYR A 61 SHEET 4 A 6 ARG A 47 ALA A 54 -1 N TYR A 53 O SER A 95 SHEET 5 A 6 SER A 5 ALA A 10 -1 N ALA A 10 O SER A 48 SHEET 6 A 6 TRP A 313 HIS A 314 -1 O TRP A 313 N THR A 9 SHEET 1 B 4 THR A 13 VAL A 17 0 SHEET 2 B 4 SER A 34 SER A 40 -1 O ALA A 35 N VAL A 16 SHEET 3 B 4 LEU A 150 SER A 155 -1 O THR A 151 N GLY A 36 SHEET 4 B 4 ALA A 160 LEU A 166 -1 O ILE A 165 N LEU A 150 SHEET 1 C 6 THR A 13 VAL A 17 0 SHEET 2 C 6 SER A 34 SER A 40 -1 O ALA A 35 N VAL A 16 SHEET 3 C 6 LYS A 302 ILE A 308 -1 O ARG A 307 N SER A 40 SHEET 4 C 6 TYR A 174 ALA A 180 -1 N ILE A 176 O LEU A 306 SHEET 5 C 6 ASN A 279 GLU A 285 -1 O VAL A 284 N SER A 175 SHEET 6 C 6 ALA A 271 ILE A 273 -1 N ALA A 271 O ALA A 283 SHEET 1 D 6 THR B 65 GLU B 66 0 SHEET 2 D 6 ILE B 60 PHE B 62 -1 N PHE B 62 O THR B 65 SHEET 3 D 6 VAL B 94 PHE B 101 1 O TYR B 96 N TYR B 61 SHEET 4 D 6 ARG B 47 ALA B 54 -1 N GLU B 49 O GLN B 99 SHEET 5 D 6 SER B 5 ALA B 10 -1 N SER B 8 O THR B 50 SHEET 6 D 6 TRP B 313 HIS B 314 -1 O TRP B 313 N THR B 9 SHEET 1 E 4 THR B 13 VAL B 17 0 SHEET 2 E 4 SER B 34 SER B 40 -1 O ILE B 37 N ILE B 14 SHEET 3 E 4 LEU B 150 SER B 155 -1 O THR B 153 N SER B 34 SHEET 4 E 4 ALA B 160 LEU B 166 -1 O GLU B 163 N ILE B 152 SHEET 1 F 6 THR B 13 VAL B 17 0 SHEET 2 F 6 SER B 34 SER B 40 -1 O ILE B 37 N ILE B 14 SHEET 3 F 6 LYS B 302 ILE B 308 -1 O ARG B 307 N SER B 40 SHEET 4 F 6 TYR B 174 ALA B 180 -1 N ALA B 180 O LYS B 302 SHEET 5 F 6 ASN B 279 GLU B 285 -1 O VAL B 284 N SER B 175 SHEET 6 F 6 ALA B 271 ILE B 273 -1 N ILE B 273 O TYR B 281 SSBOND 1 CYS A 43 CYS B 43 1555 1555 2.04 SITE 1 AC1 13 SER A 48 PHE A 62 TYR A 96 SER A 98 SITE 2 AC1 13 ASN A 100 SER A 105 GLY A 106 SER A 107 SITE 3 AC1 13 SER A 108 GLY A 111 ARG A 185 SER A 188 SITE 4 AC1 13 3S4 A 402 SITE 1 AC2 11 GLY A 15 LEU A 18 LEU A 19 SER A 105 SITE 2 AC2 11 GLU A 140 ARG A 144 ARG A 185 HIS A 192 SITE 3 AC2 11 THR A 275 GLY A 276 ADP A 401 SITE 1 AC3 3 TYR A 183 GLN A 184 ARG A 251 SITE 1 AC4 9 LEU B 18 LEU B 19 SER B 105 GLU B 140 SITE 2 AC4 9 ARG B 144 ARG B 185 THR B 275 GLY B 276 SITE 3 AC4 9 SO4 B 404 SITE 1 AC5 2 ARG B 251 GLU B 252 SITE 1 AC6 3 TYR B 183 GLN B 184 ARG B 251 SITE 1 AC7 7 LEU B 104 SER B 105 GLY B 106 SER B 107 SITE 2 AC7 7 SER B 108 ARG B 185 3S4 B 401 CRYST1 146.370 61.060 103.550 90.00 122.95 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006832 0.000000 0.004428 0.00000 SCALE2 0.000000 0.016377 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011508 0.00000