HEADER HYDROLASE/HYDROLASE INHIBITOR 21-OCT-14 4RMJ TITLE HUMAN SIRT2 IN COMPLEX WITH ADP RIBOSE AND NICOTINAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 56-356; COMPND 5 SYNONYM: REGULATORY PROTEIN SIR2 HOMOLOG 2, SIR2-LIKE PROTEIN 2; COMPND 6 EC: 3.5.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SIRT2, SIR2L, SIR2L2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.RUMPF,M.SCHIEDEL,B.KARAMAN,C.ROESSLER,B.J.NORTH,A.LEHOTZKY,J.OLAH, AUTHOR 2 K.I.LADWEIN,K.SCHMIDTKUNZ,M.GAJER,M.PANNEK,C.STEEGBORN,D.A.SINCLAIR, AUTHOR 3 S.GERHARDT,J.OVADI,M.SCHUTKOWSKI,W.SIPPL,O.EINSLE,M.JUNG REVDAT 2 28-FEB-24 4RMJ 1 REMARK SEQADV HETSYN LINK REVDAT 1 25-FEB-15 4RMJ 0 JRNL AUTH T.RUMPF,M.SCHIEDEL,B.KARAMAN,C.ROESSLER,B.J.NORTH, JRNL AUTH 2 A.LEHOTZKY,J.OLAH,K.I.LADWEIN,K.SCHMIDTKUNZ,M.GAJER, JRNL AUTH 3 M.PANNEK,C.STEEGBORN,D.A.SINCLAIR,S.GERHARDT,J.OVADI, JRNL AUTH 4 M.SCHUTKOWSKI,W.SIPPL,O.EINSLE,M.JUNG JRNL TITL SELECTIVE SIRT2 INHIBITION BY LIGAND-INDUCED REARRANGEMENT JRNL TITL 2 OF THE ACTIVE SITE. JRNL REF NAT COMMUN V. 6 6263 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 25672491 JRNL DOI 10.1038/NCOMMS7263 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 55034 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2944 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3990 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3300 REMARK 3 BIN FREE R VALUE SET COUNT : 243 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4754 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 113 REMARK 3 SOLVENT ATOMS : 138 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.057 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4983 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4721 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6722 ; 1.595 ; 2.007 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10918 ; 0.848 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 600 ; 6.228 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 212 ;34.983 ;23.679 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 866 ;14.437 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;15.259 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 732 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5439 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1102 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2406 ; 2.181 ; 3.056 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2405 ; 2.181 ; 3.055 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3004 ; 3.274 ; 4.564 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3005 ; 3.245 ; 4.589 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2577 ; 2.552 ; 3.421 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2577 ; 2.542 ; 3.438 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3721 ; 4.056 ; 5.015 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5626 ; 5.851 ;25.005 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5594 ; 5.850 ;24.970 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 55 A 355 REMARK 3 RESIDUE RANGE : A 406 A 406 REMARK 3 ORIGIN FOR THE GROUP (A): 8.1134 -17.0454 -24.0191 REMARK 3 T TENSOR REMARK 3 T11: 0.0813 T22: 0.0071 REMARK 3 T33: 0.1196 T12: 0.0025 REMARK 3 T13: -0.0006 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.4521 L22: 0.2276 REMARK 3 L33: 0.6222 L12: 0.2440 REMARK 3 L13: -0.2447 L23: 0.0672 REMARK 3 S TENSOR REMARK 3 S11: 0.0630 S12: 0.0008 S13: -0.0280 REMARK 3 S21: 0.0720 S22: 0.0143 S23: -0.0177 REMARK 3 S31: -0.0129 S32: 0.0586 S33: -0.0773 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 55 B 355 REMARK 3 RESIDUE RANGE : B 401 B 401 REMARK 3 ORIGIN FOR THE GROUP (A): 6.2705 -16.9740 -59.8892 REMARK 3 T TENSOR REMARK 3 T11: 0.0273 T22: 0.1465 REMARK 3 T33: 0.0778 T12: -0.0018 REMARK 3 T13: 0.0148 T23: -0.0601 REMARK 3 L TENSOR REMARK 3 L11: 0.2861 L22: 0.4393 REMARK 3 L33: 0.7985 L12: 0.1654 REMARK 3 L13: 0.1597 L23: 0.4996 REMARK 3 S TENSOR REMARK 3 S11: -0.0431 S12: 0.1553 S13: -0.0670 REMARK 3 S21: 0.0050 S22: 0.1111 S23: -0.0806 REMARK 3 S31: -0.0422 S32: -0.0109 S33: -0.0679 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RMJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087530. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : FIXED-EXIT LN2 COOLED DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58048 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 64.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% (WT/VOL) PEG 10,000, PH 5.75, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.80000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.14000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.98000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.14000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.80000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.98000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 53 REMARK 465 HIS A 54 REMARK 465 SER A 356 REMARK 465 GLY B 53 REMARK 465 HIS B 54 REMARK 465 SER B 356 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 55 CG SD CE REMARK 470 TYR A 139 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 355 CG CD OE1 NE2 REMARK 470 MET B 55 CG SD CE REMARK 470 TYR B 139 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN B 355 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 114 OE2 GLU B 120 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 100 -45.26 71.21 REMARK 500 CYS A 200 -70.67 -117.81 REMARK 500 GLN A 225 11.37 59.87 REMARK 500 ASP A 231 37.93 -76.14 REMARK 500 TYR A 315 -13.07 -141.59 REMARK 500 ARG A 316 -1.62 -150.45 REMARK 500 ASP B 95 -166.57 -79.97 REMARK 500 SER B 100 -48.93 71.76 REMARK 500 CYS B 200 -60.71 -122.37 REMARK 500 GLN B 225 -0.03 70.11 REMARK 500 ASP B 231 39.51 -75.32 REMARK 500 ARG B 316 -7.65 -148.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 170 OD1 REMARK 620 2 GLU A 173 OE2 117.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 406 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 195 SG REMARK 620 2 CYS A 200 SG 113.3 REMARK 620 3 CYS A 221 SG 105.9 107.5 REMARK 620 4 CYS A 224 SG 92.5 123.0 112.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 195 SG REMARK 620 2 CYS B 200 SG 118.6 REMARK 620 3 CYS B 221 SG 101.7 116.0 REMARK 620 4 CYS B 224 SG 95.7 115.3 106.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AR6 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AR6 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE B 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RMG RELATED DB: PDB REMARK 900 RELATED ID: 4RMH RELATED DB: PDB REMARK 900 RELATED ID: 4RMI RELATED DB: PDB DBREF 4RMJ A 56 356 UNP Q8IXJ6 SIR2_HUMAN 56 356 DBREF 4RMJ B 56 356 UNP Q8IXJ6 SIR2_HUMAN 56 356 SEQADV 4RMJ GLY A 53 UNP Q8IXJ6 EXPRESSION TAG SEQADV 4RMJ HIS A 54 UNP Q8IXJ6 EXPRESSION TAG SEQADV 4RMJ MET A 55 UNP Q8IXJ6 EXPRESSION TAG SEQADV 4RMJ GLY B 53 UNP Q8IXJ6 EXPRESSION TAG SEQADV 4RMJ HIS B 54 UNP Q8IXJ6 EXPRESSION TAG SEQADV 4RMJ MET B 55 UNP Q8IXJ6 EXPRESSION TAG SEQRES 1 A 304 GLY HIS MET GLU ARG LEU LEU ASP GLU LEU THR LEU GLU SEQRES 2 A 304 GLY VAL ALA ARG TYR MET GLN SER GLU ARG CYS ARG ARG SEQRES 3 A 304 VAL ILE CYS LEU VAL GLY ALA GLY ILE SER THR SER ALA SEQRES 4 A 304 GLY ILE PRO ASP PHE ARG SER PRO SER THR GLY LEU TYR SEQRES 5 A 304 ASP ASN LEU GLU LYS TYR HIS LEU PRO TYR PRO GLU ALA SEQRES 6 A 304 ILE PHE GLU ILE SER TYR PHE LYS LYS HIS PRO GLU PRO SEQRES 7 A 304 PHE PHE ALA LEU ALA LYS GLU LEU TYR PRO GLY GLN PHE SEQRES 8 A 304 LYS PRO THR ILE CYS HIS TYR PHE MET ARG LEU LEU LYS SEQRES 9 A 304 ASP LYS GLY LEU LEU LEU ARG CYS TYR THR GLN ASN ILE SEQRES 10 A 304 ASP THR LEU GLU ARG ILE ALA GLY LEU GLU GLN GLU ASP SEQRES 11 A 304 LEU VAL GLU ALA HIS GLY THR PHE TYR THR SER HIS CYS SEQRES 12 A 304 VAL SER ALA SER CYS ARG HIS GLU TYR PRO LEU SER TRP SEQRES 13 A 304 MET LYS GLU LYS ILE PHE SER GLU VAL THR PRO LYS CYS SEQRES 14 A 304 GLU ASP CYS GLN SER LEU VAL LYS PRO ASP ILE VAL PHE SEQRES 15 A 304 PHE GLY GLU SER LEU PRO ALA ARG PHE PHE SER CYS MET SEQRES 16 A 304 GLN SER ASP PHE LEU LYS VAL ASP LEU LEU LEU VAL MET SEQRES 17 A 304 GLY THR SER LEU GLN VAL GLN PRO PHE ALA SER LEU ILE SEQRES 18 A 304 SER LYS ALA PRO LEU SER THR PRO ARG LEU LEU ILE ASN SEQRES 19 A 304 LYS GLU LYS ALA GLY GLN SER ASP PRO PHE LEU GLY MET SEQRES 20 A 304 ILE MET GLY LEU GLY GLY GLY MET ASP PHE ASP SER LYS SEQRES 21 A 304 LYS ALA TYR ARG ASP VAL ALA TRP LEU GLY GLU CYS ASP SEQRES 22 A 304 GLN GLY CYS LEU ALA LEU ALA GLU LEU LEU GLY TRP LYS SEQRES 23 A 304 LYS GLU LEU GLU ASP LEU VAL ARG ARG GLU HIS ALA SER SEQRES 24 A 304 ILE ASP ALA GLN SER SEQRES 1 B 304 GLY HIS MET GLU ARG LEU LEU ASP GLU LEU THR LEU GLU SEQRES 2 B 304 GLY VAL ALA ARG TYR MET GLN SER GLU ARG CYS ARG ARG SEQRES 3 B 304 VAL ILE CYS LEU VAL GLY ALA GLY ILE SER THR SER ALA SEQRES 4 B 304 GLY ILE PRO ASP PHE ARG SER PRO SER THR GLY LEU TYR SEQRES 5 B 304 ASP ASN LEU GLU LYS TYR HIS LEU PRO TYR PRO GLU ALA SEQRES 6 B 304 ILE PHE GLU ILE SER TYR PHE LYS LYS HIS PRO GLU PRO SEQRES 7 B 304 PHE PHE ALA LEU ALA LYS GLU LEU TYR PRO GLY GLN PHE SEQRES 8 B 304 LYS PRO THR ILE CYS HIS TYR PHE MET ARG LEU LEU LYS SEQRES 9 B 304 ASP LYS GLY LEU LEU LEU ARG CYS TYR THR GLN ASN ILE SEQRES 10 B 304 ASP THR LEU GLU ARG ILE ALA GLY LEU GLU GLN GLU ASP SEQRES 11 B 304 LEU VAL GLU ALA HIS GLY THR PHE TYR THR SER HIS CYS SEQRES 12 B 304 VAL SER ALA SER CYS ARG HIS GLU TYR PRO LEU SER TRP SEQRES 13 B 304 MET LYS GLU LYS ILE PHE SER GLU VAL THR PRO LYS CYS SEQRES 14 B 304 GLU ASP CYS GLN SER LEU VAL LYS PRO ASP ILE VAL PHE SEQRES 15 B 304 PHE GLY GLU SER LEU PRO ALA ARG PHE PHE SER CYS MET SEQRES 16 B 304 GLN SER ASP PHE LEU LYS VAL ASP LEU LEU LEU VAL MET SEQRES 17 B 304 GLY THR SER LEU GLN VAL GLN PRO PHE ALA SER LEU ILE SEQRES 18 B 304 SER LYS ALA PRO LEU SER THR PRO ARG LEU LEU ILE ASN SEQRES 19 B 304 LYS GLU LYS ALA GLY GLN SER ASP PRO PHE LEU GLY MET SEQRES 20 B 304 ILE MET GLY LEU GLY GLY GLY MET ASP PHE ASP SER LYS SEQRES 21 B 304 LYS ALA TYR ARG ASP VAL ALA TRP LEU GLY GLU CYS ASP SEQRES 22 B 304 GLN GLY CYS LEU ALA LEU ALA GLU LEU LEU GLY TRP LYS SEQRES 23 B 304 LYS GLU LEU GLU ASP LEU VAL ARG ARG GLU HIS ALA SER SEQRES 24 B 304 ILE ASP ALA GLN SER HET AR6 A 401 36 HET NCA A 402 9 HET PEG A 403 7 HET EDO A 404 4 HET NA A 405 1 HET ZN A 406 1 HET ZN B 401 1 HET AR6 B 402 36 HET EDO B 403 4 HET EDO B 404 4 HET PGE B 405 10 HETNAM AR6 [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY- HETNAM 2 AR6 OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5- HETNAM 3 AR6 TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN HETNAM 4 AR6 PHOSPHATE HETNAM NCA NICOTINAMIDE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETNAM ZN ZINC ION HETNAM PGE TRIETHYLENE GLYCOL HETSYN AR6 ADENOSINE-5-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 AR6 2(C15 H23 N5 O14 P2) FORMUL 4 NCA C6 H6 N2 O FORMUL 5 PEG C4 H10 O3 FORMUL 6 EDO 3(C2 H6 O2) FORMUL 7 NA NA 1+ FORMUL 8 ZN 2(ZN 2+) FORMUL 13 PGE C6 H14 O4 FORMUL 14 HOH *138(H2 O) HELIX 1 1 THR A 63 SER A 73 1 11 HELIX 2 2 ALA A 85 GLY A 92 5 8 HELIX 3 3 GLY A 102 ASN A 106 5 5 HELIX 4 4 LEU A 107 HIS A 111 5 5 HELIX 5 5 TYR A 114 PHE A 119 5 6 HELIX 6 6 GLU A 120 HIS A 127 1 8 HELIX 7 7 PRO A 128 TYR A 139 1 12 HELIX 8 8 THR A 146 LYS A 158 1 13 HELIX 9 9 THR A 171 ALA A 176 1 6 HELIX 10 10 GLU A 179 GLU A 181 5 3 HELIX 11 11 LEU A 206 SER A 215 1 10 HELIX 12 12 PRO A 240 PHE A 251 1 12 HELIX 13 13 PRO A 268 ALA A 270 5 3 HELIX 14 14 SER A 271 ALA A 276 1 6 HELIX 15 15 GLU A 323 GLY A 336 1 14 HELIX 16 16 TRP A 337 GLN A 355 1 19 HELIX 17 17 THR B 63 SER B 73 1 11 HELIX 18 18 ALA B 85 SER B 88 5 4 HELIX 19 19 GLY B 102 ASN B 106 5 5 HELIX 20 20 LEU B 107 HIS B 111 5 5 HELIX 21 21 TYR B 114 PHE B 119 5 6 HELIX 22 22 GLU B 120 HIS B 127 1 8 HELIX 23 23 PRO B 128 TYR B 139 1 12 HELIX 24 24 THR B 146 LYS B 158 1 13 HELIX 25 25 THR B 171 ALA B 176 1 6 HELIX 26 26 GLU B 179 GLU B 181 5 3 HELIX 27 27 LEU B 206 SER B 215 1 10 HELIX 28 28 PRO B 240 PHE B 251 1 12 HELIX 29 29 PRO B 268 ALA B 276 5 9 HELIX 30 30 GLU B 323 GLY B 336 1 14 HELIX 31 31 TRP B 337 GLN B 355 1 19 SHEET 1 A 6 LEU A 183 GLU A 185 0 SHEET 2 A 6 LEU A 161 THR A 166 1 N THR A 166 O VAL A 184 SHEET 3 A 6 VAL A 79 VAL A 83 1 N CYS A 81 O TYR A 165 SHEET 4 A 6 LEU A 256 MET A 260 1 O LEU A 258 N LEU A 82 SHEET 5 A 6 ARG A 282 ASN A 286 1 O LEU A 283 N VAL A 259 SHEET 6 A 6 ASP A 317 LEU A 321 1 O VAL A 318 N LEU A 284 SHEET 1 B 3 GLU A 203 PRO A 205 0 SHEET 2 B 3 GLY A 188 CYS A 195 -1 N SER A 193 O TYR A 204 SHEET 3 B 3 VAL A 228 ILE A 232 -1 O ASP A 231 N THR A 192 SHEET 1 C 6 LEU B 183 GLU B 185 0 SHEET 2 C 6 LEU B 161 THR B 166 1 N THR B 166 O VAL B 184 SHEET 3 C 6 VAL B 79 VAL B 83 1 N CYS B 81 O TYR B 165 SHEET 4 C 6 LEU B 256 MET B 260 1 O LEU B 258 N LEU B 82 SHEET 5 C 6 ARG B 282 ASN B 286 1 O LEU B 283 N VAL B 259 SHEET 6 C 6 ASP B 317 LEU B 321 1 O VAL B 318 N LEU B 284 SHEET 1 D 3 GLU B 203 PRO B 205 0 SHEET 2 D 3 GLY B 188 CYS B 195 -1 N SER B 193 O TYR B 204 SHEET 3 D 3 VAL B 228 ILE B 232 -1 O LYS B 229 N HIS B 194 LINK OD1 ASP A 170 NA NA A 405 1555 1555 2.73 LINK OE2 GLU A 173 NA NA A 405 1555 1555 2.51 LINK SG CYS A 195 ZN ZN A 406 1555 1555 2.37 LINK SG CYS A 200 ZN ZN A 406 1555 1555 2.31 LINK SG CYS A 221 ZN ZN A 406 1555 1555 2.36 LINK SG CYS A 224 ZN ZN A 406 1555 1555 2.32 LINK SG CYS B 195 ZN ZN B 401 1555 1555 2.33 LINK SG CYS B 200 ZN ZN B 401 1555 1555 2.32 LINK SG CYS B 221 ZN ZN B 401 1555 1555 2.28 LINK SG CYS B 224 ZN ZN B 401 1555 1555 2.37 CISPEP 1 GLN A 267 PRO A 268 0 0.47 CISPEP 2 GLN B 267 PRO B 268 0 3.38 SITE 1 AC1 24 GLY A 84 ALA A 85 GLY A 86 THR A 89 SITE 2 AC1 24 ASP A 95 PHE A 96 ARG A 97 TYR A 104 SITE 3 AC1 24 GLN A 167 HIS A 187 PHE A 235 GLY A 261 SITE 4 AC1 24 THR A 262 SER A 263 ASN A 286 LYS A 287 SITE 5 AC1 24 GLU A 288 GLY A 322 GLU A 323 CYS A 324 SITE 6 AC1 24 EDO A 404 HOH A 504 HOH A 543 HOH A 549 SITE 1 AC2 6 ILE A 93 PRO A 94 PHE A 96 ASN A 168 SITE 2 AC2 6 ILE A 169 ASP A 170 SITE 1 AC3 7 GLU A 56 SER A 100 THR A 101 ASN A 106 SITE 2 AC3 7 PRO A 277 LEU A 278 SER A 279 SITE 1 AC4 4 PHE A 119 HIS A 187 VAL A 233 AR6 A 401 SITE 1 AC5 5 SER A 88 HIS A 149 ASN A 168 ASP A 170 SITE 2 AC5 5 GLU A 173 SITE 1 AC6 4 CYS A 195 CYS A 200 CYS A 221 CYS A 224 SITE 1 AC7 4 CYS B 195 CYS B 200 CYS B 221 CYS B 224 SITE 1 AC8 24 GLY B 84 ALA B 85 GLY B 86 THR B 89 SITE 2 AC8 24 ASP B 95 PHE B 96 ARG B 97 TYR B 104 SITE 3 AC8 24 GLN B 167 HIS B 187 PHE B 235 GLY B 261 SITE 4 AC8 24 THR B 262 SER B 263 VAL B 266 ASN B 286 SITE 5 AC8 24 LYS B 287 GLU B 288 GLY B 322 GLU B 323 SITE 6 AC8 24 CYS B 324 EDO B 404 HOH B 514 HOH B 526 SITE 1 AC9 1 LEU B 321 SITE 1 BC1 4 HIS B 187 VAL B 233 AR6 B 402 HOH B 520 SITE 1 BC2 9 GLN B 265 GLY B 291 SER B 293 PHE B 296 SITE 2 BC2 9 MET B 299 ILE B 300 MET B 301 GLY B 304 SITE 3 BC2 9 HOH B 519 CRYST1 77.600 77.960 114.280 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012887 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012827 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008750 0.00000