HEADER HYDROLASE 23-OCT-14 4RN7 TITLE THE CRYSTAL STRUCTURE OF N-ACETYLMURAMOYL-L-ALANINE AMIDASE FROM TITLE 2 CLOSTRIDIUM DIFFICILE 630 COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLMURAMOYL-L-ALANINE AMIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 117-301; COMPND 5 EC: 3.5.1.28; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PEPTOCLOSTRIDIUM DIFFICILE; SOURCE 3 ORGANISM_TAXID: 272563; SOURCE 4 STRAIN: 630; SOURCE 5 GENE: CD630_27610; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,R.MULLIGAN,K.KWON,W.F.ANDERSON,A.JOACHIMIAK,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 2 22-NOV-17 4RN7 1 REMARK REVDAT 1 05-NOV-14 4RN7 0 JRNL AUTH K.TAN,R.MULLIGAN,K.KWON,W.F.ANDERSON,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF N-ACETYLMURAMOYL-L-ALANINE AMIDASE JRNL TITL 2 FROM CLOSTRIDIUM DIFFICILE 630 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 26718 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1322 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.7591 - 3.5697 0.98 2926 164 0.1792 0.1870 REMARK 3 2 3.5697 - 2.8342 1.00 2864 146 0.1928 0.2301 REMARK 3 3 2.8342 - 2.4761 1.00 2851 133 0.2091 0.2150 REMARK 3 4 2.4761 - 2.2498 1.00 2787 163 0.1989 0.2281 REMARK 3 5 2.2498 - 2.0886 1.00 2830 119 0.1953 0.1870 REMARK 3 6 2.0886 - 1.9655 1.00 2807 138 0.2096 0.2542 REMARK 3 7 1.9655 - 1.8671 1.00 2770 176 0.2228 0.2850 REMARK 3 8 1.8671 - 1.7858 1.00 2793 125 0.2340 0.2898 REMARK 3 9 1.7858 - 1.7171 1.00 2768 158 0.2470 0.2845 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1520 REMARK 3 ANGLE : 0.988 2067 REMARK 3 CHIRALITY : 0.068 240 REMARK 3 PLANARITY : 0.003 270 REMARK 3 DIHEDRAL : 13.634 578 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 114 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.3530 15.6623 -17.1819 REMARK 3 T TENSOR REMARK 3 T11: 0.3072 T22: 0.2358 REMARK 3 T33: 0.2491 T12: -0.0617 REMARK 3 T13: -0.0065 T23: 0.0344 REMARK 3 L TENSOR REMARK 3 L11: 8.8507 L22: 7.2895 REMARK 3 L33: 2.7052 L12: 3.3388 REMARK 3 L13: -3.7746 L23: -3.9995 REMARK 3 S TENSOR REMARK 3 S11: 0.3188 S12: 0.8530 S13: 0.3433 REMARK 3 S21: -0.4618 S22: 0.3244 S23: 0.0563 REMARK 3 S31: 0.6311 S32: -0.6947 S33: -0.6424 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 124 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.1293 6.5523 -0.0284 REMARK 3 T TENSOR REMARK 3 T11: 0.3681 T22: 0.2271 REMARK 3 T33: 0.3267 T12: -0.1270 REMARK 3 T13: -0.0265 T23: 0.0279 REMARK 3 L TENSOR REMARK 3 L11: 3.8750 L22: 5.6958 REMARK 3 L33: 0.4512 L12: -0.4133 REMARK 3 L13: 0.7725 L23: 1.2062 REMARK 3 S TENSOR REMARK 3 S11: 0.0807 S12: -0.4889 S13: -0.1633 REMARK 3 S21: 0.8210 S22: -0.0114 S23: -0.3812 REMARK 3 S31: 0.0924 S32: 0.2336 S33: 0.0207 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 159 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.7090 9.7308 -6.9408 REMARK 3 T TENSOR REMARK 3 T11: 0.2482 T22: 0.2148 REMARK 3 T33: 0.2339 T12: -0.0773 REMARK 3 T13: 0.0134 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 2.7593 L22: 5.3802 REMARK 3 L33: 2.9316 L12: 1.3050 REMARK 3 L13: -0.2038 L23: -1.5370 REMARK 3 S TENSOR REMARK 3 S11: -0.0304 S12: 0.1630 S13: 0.0888 REMARK 3 S21: -0.0531 S22: 0.0850 S23: 0.3515 REMARK 3 S31: -0.0283 S32: -0.2306 S33: -0.0414 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 277 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.6106 2.5820 -15.6479 REMARK 3 T TENSOR REMARK 3 T11: 0.5391 T22: 0.3762 REMARK 3 T33: 0.4008 T12: -0.1291 REMARK 3 T13: 0.0519 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 2.8937 L22: 3.2210 REMARK 3 L33: 7.6130 L12: -2.8747 REMARK 3 L13: 2.9507 L23: -3.7733 REMARK 3 S TENSOR REMARK 3 S11: -0.0334 S12: 0.3861 S13: -0.1660 REMARK 3 S21: -1.0166 S22: -0.0761 S23: -0.2224 REMARK 3 S31: 0.4262 S32: -0.1422 S33: 0.0595 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RN7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087554. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97899 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO BUILDER/HKL3000, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK BUILDER/HKL3000, HKL REMARK 200 -3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26769 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 28.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 54.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.40 REMARK 200 R MERGE FOR SHELL (I) : 0.71700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD BUILDER/HKL3000, MLPHARE BUILDER/HKL3000, DM REMARK 200 BUILDER/HKL3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 25% W/V PEG3350, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.13333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.06667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.06667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 64.13333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 300 REMARK 465 LYS A 301 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 130 CE NZ REMARK 470 GLU A 133 CD OE1 OE2 REMARK 470 LYS A 135 NZ REMARK 470 LYS A 158 CE NZ REMARK 470 LYS A 160 CD CE NZ REMARK 470 ASP A 170 OD1 OD2 REMARK 470 LYS A 200 CD CE NZ REMARK 470 LYS A 236 CE NZ REMARK 470 LYS A 298 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 115 35.59 -150.29 REMARK 500 HIS A 125 -166.26 64.96 REMARK 500 ASN A 203 29.95 -145.57 REMARK 500 CYS A 262 36.42 -85.72 REMARK 500 LYS A 298 54.22 -146.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 EPE A 403 REMARK 610 EPE A 404 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 195 ND1 REMARK 620 2 HIS A 125 NE2 97.5 REMARK 620 3 GLU A 141 OE2 99.1 92.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP05258 RELATED DB: TARGETTRACK DBREF 4RN7 A 117 301 UNP Q183J9 Q183J9_PEPD6 117 301 SEQADV 4RN7 SER A 114 UNP Q183J9 EXPRESSION TAG SEQADV 4RN7 ASN A 115 UNP Q183J9 EXPRESSION TAG SEQADV 4RN7 ALA A 116 UNP Q183J9 EXPRESSION TAG SEQRES 1 A 188 SER ASN ALA TYR THR VAL PHE ILE ASP PRO GLY HIS GLY SEQRES 2 A 188 GLY ASN ASP LYS GLY THR GLU SER LYS THR SER ASN ARG SEQRES 3 A 188 TYR GLU LYS ASP LEU ASN LEU GLN ILE ALA LYS LYS LEU SEQRES 4 A 188 ALA ASN LYS LEU SER LYS GLN LYS ASP ILE GLN VAL VAL SEQRES 5 A 188 VAL SER ARG THR ASP ASP THR TYR ILE SER LEU LYS ASP SEQRES 6 A 188 ARG ALA ILE LEU ALA ASN ASN SER SER ALA ASP VAL LEU SEQRES 7 A 188 VAL SER ILE HIS LEU ASN ALA GLU LYS ASN GLY ASN THR SEQRES 8 A 188 ALA THR GLY ILE GLU THR TRP TYR ARG ASN LYS ALA THR SEQRES 9 A 188 ASP GLY SER LYS GLU LEU ALA GLN THR VAL GLN SER THR SEQRES 10 A 188 ILE VAL SER TYR VAL LYS VAL ARG ASP ARG GLY ILE VAL SEQRES 11 A 188 GLU ASN ASN PHE GLU VAL LEU ARG GLU SER ASN MSE PRO SEQRES 12 A 188 ALA ILE LEU ILE GLU CYS GLY PHE LEU THR THR PRO SER SEQRES 13 A 188 GLU GLU GLN LYS ILE ILE ASN GLU LYS TYR GLN ASP GLN SEQRES 14 A 188 LEU ALA GLU GLY ILE VAL GLN GLY VAL LEU SER TYR LEU SEQRES 15 A 188 ASP SER LYS GLY ASN LYS MODRES 4RN7 MSE A 255 MET SELENOMETHIONINE HET MSE A 255 8 HET ZN A 401 1 HET GOL A 402 6 HET EPE A 403 9 HET EPE A 404 7 HET FMT A 405 3 HET FMT A 406 3 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM FMT FORMIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EPE HEPES FORMUL 1 MSE C5 H11 N O2 SE FORMUL 2 ZN ZN 2+ FORMUL 3 GOL C3 H8 O3 FORMUL 4 EPE 2(C8 H18 N2 O4 S) FORMUL 6 FMT 2(C H2 O2) FORMUL 8 HOH *123(H2 O) HELIX 1 1 TYR A 140 LYS A 158 1 19 HELIX 2 2 SER A 175 SER A 186 1 12 HELIX 3 3 GLY A 219 LYS A 236 1 18 HELIX 4 4 PHE A 247 SER A 253 1 7 HELIX 5 5 THR A 267 ILE A 275 1 9 HELIX 6 6 ASN A 276 GLY A 299 1 24 SHEET 1 A 6 ILE A 162 VAL A 166 0 SHEET 2 A 6 TYR A 117 PRO A 123 1 N ILE A 121 O VAL A 165 SHEET 3 A 6 VAL A 190 ASN A 197 1 O VAL A 192 N ASP A 122 SHEET 4 A 6 ALA A 257 PHE A 264 1 O ILE A 260 N SER A 193 SHEET 5 A 6 ILE A 208 TYR A 212 -1 N TRP A 211 O LEU A 259 SHEET 6 A 6 ASP A 239 GLU A 244 1 O VAL A 243 N THR A 210 LINK C ASN A 254 N MSE A 255 1555 1555 1.33 LINK C MSE A 255 N PRO A 256 1555 1555 1.35 LINK ND1 HIS A 195 ZN ZN A 401 1555 1555 2.08 LINK NE2 HIS A 125 ZN ZN A 401 1555 1555 2.13 LINK OE2 GLU A 141 ZN ZN A 401 1555 1555 2.13 SITE 1 AC1 4 SER A 114 HIS A 125 GLU A 141 HIS A 195 SITE 1 AC2 2 LYS A 160 ASP A 161 SITE 1 AC3 7 ARG A 213 LYS A 215 ALA A 216 THR A 217 SITE 2 AC3 7 ASP A 218 TYR A 234 SER A 253 SITE 1 AC4 3 GLU A 199 ARG A 240 HOH A 503 SITE 1 AC5 4 ALA A 116 GLN A 163 ALA A 198 HOH A 581 SITE 1 AC6 2 GLN A 163 SER A 186 CRYST1 66.407 66.407 96.200 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015059 0.008694 0.000000 0.00000 SCALE2 0.000000 0.017388 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010395 0.00000