HEADER LYASE 24-OCT-14 4RNQ TITLE CRYSTAL STRUCTURE OF TOBACCO 5-EPI-ARISTOLOCHENE SYNTHASE (TEAS) WITH TITLE 2 ANILINOGERANYL DIPHOSPHATE (AGPP) AND GERANILINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5-EPI-ARISTOLOCHENE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EAS; COMPND 5 EC: 4.2.3.61; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NICOTIANA TABACUM; SOURCE 3 ORGANISM_COMMON: AMERICAN TOBACCO,TOBACCO; SOURCE 4 ORGANISM_TAXID: 4097; SOURCE 5 GENE: EAS3, EAS4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PH9GW KEYWDS TEAS, 5-EPI-ARISTOLOCHENE SYNTHASE, ANILINOGERANYL DIPHOSPHATE KEYWDS 2 (AGPP), GERANILINE, TERPENE SYNTHASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR H.J.KOO,C.M.CRENSHAW,C.STARKS,H.P.SPIELMANN,J.CHAPPELL,J.P.NOEL REVDAT 3 28-FEB-24 4RNQ 1 REMARK SEQADV LINK REVDAT 2 29-JUL-15 4RNQ 1 JRNL REVDAT 1 06-MAY-15 4RNQ 0 JRNL AUTH K.A.RISING,C.M.CRENSHAW,H.J.KOO,T.SUBRAMANIAN,K.A.CHEHADE, JRNL AUTH 2 C.STARKS,K.D.ALLEN,D.A.ANDRES,H.P.SPIELMANN,J.P.NOEL, JRNL AUTH 3 J.CHAPPELL JRNL TITL FORMATION OF A NOVEL MACROCYCLIC ALKALOID FROM THE UNNATURAL JRNL TITL 2 FARNESYL DIPHOSPHATE ANALOGUE ANILINOGERANYL DIPHOSPHATE BY JRNL TITL 3 5-EPI-ARISTOLOCHENE SYNTHASE. JRNL REF ACS CHEM.BIOL. V. 10 1729 2015 JRNL REFN ISSN 1554-8929 JRNL PMID 25897591 JRNL DOI 10.1021/ACSCHEMBIO.5B00145 REMARK 2 REMARK 2 RESOLUTION. 2.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 35264 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1767 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.0831 - 5.8053 1.00 2906 150 0.1250 0.1740 REMARK 3 2 5.8053 - 4.6088 1.00 2766 143 0.1328 0.1893 REMARK 3 3 4.6088 - 4.0265 1.00 2712 145 0.1287 0.1560 REMARK 3 4 4.0265 - 3.6584 1.00 2706 135 0.1552 0.2003 REMARK 3 5 3.6584 - 3.3963 1.00 2683 147 0.1886 0.2588 REMARK 3 6 3.3963 - 3.1961 1.00 2677 141 0.2085 0.3007 REMARK 3 7 3.1961 - 3.0360 1.00 2656 144 0.2227 0.2471 REMARK 3 8 3.0360 - 2.9039 1.00 2675 143 0.2357 0.2990 REMARK 3 9 2.9039 - 2.7921 1.00 2660 145 0.2441 0.3008 REMARK 3 10 2.7921 - 2.6958 1.00 2636 135 0.2543 0.3060 REMARK 3 11 2.6958 - 2.6115 0.84 2259 113 0.2706 0.3533 REMARK 3 12 2.6115 - 2.5368 0.79 2060 109 0.3089 0.3839 REMARK 3 13 2.5368 - 2.4700 0.79 2101 117 0.3428 0.3642 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4518 REMARK 3 ANGLE : 1.045 6129 REMARK 3 CHIRALITY : 0.037 683 REMARK 3 PLANARITY : 0.012 774 REMARK 3 DIHEDRAL : 15.861 1696 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.9934 55.1481 21.5471 REMARK 3 T TENSOR REMARK 3 T11: 0.5423 T22: 0.3251 REMARK 3 T33: 0.5971 T12: -0.0660 REMARK 3 T13: 0.0720 T23: -0.0776 REMARK 3 L TENSOR REMARK 3 L11: 3.8464 L22: 4.5646 REMARK 3 L33: 1.9835 L12: -1.2319 REMARK 3 L13: 0.4024 L23: -0.1307 REMARK 3 S TENSOR REMARK 3 S11: -0.0213 S12: -0.3346 S13: -0.2440 REMARK 3 S21: 0.4059 S22: 0.0727 S23: 0.7605 REMARK 3 S31: 0.1371 S32: -0.3366 S33: -0.0505 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.7030 59.5191 25.9638 REMARK 3 T TENSOR REMARK 3 T11: 0.4808 T22: 0.3807 REMARK 3 T33: 0.5473 T12: 0.0577 REMARK 3 T13: -0.1293 T23: -0.0653 REMARK 3 L TENSOR REMARK 3 L11: 1.6738 L22: 8.0890 REMARK 3 L33: 9.0981 L12: 3.3071 REMARK 3 L13: -0.3277 L23: -1.0096 REMARK 3 S TENSOR REMARK 3 S11: 0.1945 S12: -0.5572 S13: -0.0606 REMARK 3 S21: 0.9077 S22: 0.0393 S23: -0.6788 REMARK 3 S31: 0.0874 S32: 1.1923 S33: -0.2570 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.6504 63.9601 9.4003 REMARK 3 T TENSOR REMARK 3 T11: 0.3596 T22: 0.3434 REMARK 3 T33: 0.5556 T12: -0.0387 REMARK 3 T13: 0.0431 T23: -0.0845 REMARK 3 L TENSOR REMARK 3 L11: 3.2972 L22: 3.2991 REMARK 3 L33: 6.6301 L12: -1.2218 REMARK 3 L13: -0.9589 L23: 2.9040 REMARK 3 S TENSOR REMARK 3 S11: 0.0181 S12: 0.0195 S13: 0.2146 REMARK 3 S21: -0.1108 S22: 0.2294 S23: -0.7798 REMARK 3 S31: -0.2070 S32: 0.5231 S33: -0.2125 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 196 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.2582 54.4626 13.5990 REMARK 3 T TENSOR REMARK 3 T11: 0.3808 T22: 0.3570 REMARK 3 T33: 0.5212 T12: -0.0283 REMARK 3 T13: 0.0486 T23: -0.0775 REMARK 3 L TENSOR REMARK 3 L11: 2.4881 L22: 5.7123 REMARK 3 L33: 2.4105 L12: 0.0787 REMARK 3 L13: -0.0405 L23: -0.2109 REMARK 3 S TENSOR REMARK 3 S11: -0.0609 S12: 0.1345 S13: -0.4510 REMARK 3 S21: -0.1304 S22: 0.2157 S23: 0.3452 REMARK 3 S31: 0.2770 S32: -0.0067 S33: -0.0484 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 412 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5118 77.8609 22.0691 REMARK 3 T TENSOR REMARK 3 T11: 0.5095 T22: 0.4921 REMARK 3 T33: 1.0281 T12: 0.0549 REMARK 3 T13: 0.1434 T23: -0.1132 REMARK 3 L TENSOR REMARK 3 L11: 1.9585 L22: 3.7174 REMARK 3 L33: 1.1356 L12: 0.0057 REMARK 3 L13: -0.2645 L23: 0.3693 REMARK 3 S TENSOR REMARK 3 S11: 0.0385 S12: -0.1398 S13: 0.4569 REMARK 3 S21: 0.1512 S22: -0.0253 S23: 1.3187 REMARK 3 S31: -0.3127 S32: -0.4302 S33: -0.0010 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 413 THROUGH 472 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7235 84.2613 15.8139 REMARK 3 T TENSOR REMARK 3 T11: 0.6486 T22: 0.2770 REMARK 3 T33: 0.7678 T12: 0.0275 REMARK 3 T13: -0.0085 T23: -0.1169 REMARK 3 L TENSOR REMARK 3 L11: 5.1016 L22: 4.9826 REMARK 3 L33: 8.6407 L12: -0.1011 REMARK 3 L13: -1.2337 L23: -1.9767 REMARK 3 S TENSOR REMARK 3 S11: -0.0954 S12: 0.4683 S13: 0.6407 REMARK 3 S21: -0.5424 S22: -0.2147 S23: 0.1960 REMARK 3 S31: -0.7762 S32: -0.2610 S33: 0.1312 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 473 THROUGH 548 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.7276 71.4593 14.3867 REMARK 3 T TENSOR REMARK 3 T11: 0.3702 T22: 0.3220 REMARK 3 T33: 0.5801 T12: 0.0612 REMARK 3 T13: 0.0380 T23: -0.0493 REMARK 3 L TENSOR REMARK 3 L11: 4.0223 L22: 3.9298 REMARK 3 L33: 2.5726 L12: 0.6532 REMARK 3 L13: 0.2216 L23: 1.1604 REMARK 3 S TENSOR REMARK 3 S11: 0.1034 S12: 0.4512 S13: 0.3431 REMARK 3 S21: -0.2105 S22: 0.0017 S23: 0.3104 REMARK 3 S31: -0.0365 S32: 0.0462 S33: -0.0951 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RNQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000087572. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35371 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.470 REMARK 200 RESOLUTION RANGE LOW (A) : 56.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.99700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1:1 PROTEIN:MOPSO7 100MM, MGOAC 100 REMARK 280 MM, PEG8000 10%, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 278K, REMARK 280 PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.15000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 63.37500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 63.37500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.07500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 63.37500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 63.37500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 93.22500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 63.37500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.37500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.07500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 63.37500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.37500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 93.22500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.15000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 VAL A 6 REMARK 465 ALA A 7 REMARK 465 ASN A 8 REMARK 465 TYR A 9 REMARK 465 GLU A 10 REMARK 465 GLU A 11 REMARK 465 GLU A 12 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 726 O HOH A 727 1.89 REMARK 500 O HOH A 715 O HOH A 724 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 23 126.25 -36.60 REMARK 500 ASN A 98 86.74 55.28 REMARK 500 ASN A 100 76.09 -109.64 REMARK 500 CYS A 101 27.96 -163.51 REMARK 500 ASN A 133 -18.01 -175.63 REMARK 500 ALA A 306 21.45 -154.08 REMARK 500 TYR A 307 -52.48 -159.14 REMARK 500 TRP A 323 82.45 49.82 REMARK 500 ASP A 324 125.28 -179.02 REMARK 500 ASN A 326 -9.75 -57.38 REMARK 500 THR A 448 35.61 -99.39 REMARK 500 ASP A 525 85.81 -68.31 REMARK 500 VAL A 543 -70.73 -112.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 301 OD2 REMARK 620 2 ASP A 305 OD2 101.1 REMARK 620 3 A4S A 604 O22 86.6 63.3 REMARK 620 4 DPO A 606 O3 71.2 67.2 15.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 301 OD1 REMARK 620 2 ASP A 305 OD2 113.2 REMARK 620 3 A4S A 604 O18 143.1 103.3 REMARK 620 4 A4S A 604 O19 103.3 105.9 59.8 REMARK 620 5 DPO A 606 O5 150.0 93.0 13.9 53.2 REMARK 620 6 DPO A 606 O3 95.6 68.4 92.7 45.2 80.2 REMARK 620 7 DPO A 606 O4 99.9 111.5 60.1 5.7 55.0 49.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 448 OG1 REMARK 620 2 A4S A 604 O23 146.1 REMARK 620 3 DPO A 606 O1 134.4 13.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE A4S A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1GA A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DPO A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 607 DBREF 4RNQ A 1 548 UNP Q40577 5EAS_TOBAC 1 548 SEQADV 4RNQ GLY A -1 UNP Q40577 EXPRESSION TAG SEQADV 4RNQ SER A 0 UNP Q40577 EXPRESSION TAG SEQRES 1 A 550 GLY SER MET ALA SER ALA ALA VAL ALA ASN TYR GLU GLU SEQRES 2 A 550 GLU ILE VAL ARG PRO VAL ALA ASP PHE SER PRO SER LEU SEQRES 3 A 550 TRP GLY ASP GLN PHE LEU SER PHE SER ILE LYS ASN GLN SEQRES 4 A 550 VAL ALA GLU LYS TYR ALA LYS GLU ILE GLU ALA LEU LYS SEQRES 5 A 550 GLU GLN THR ARG ASN MET LEU LEU ALA THR GLY MET LYS SEQRES 6 A 550 LEU ALA ASP THR LEU ASN LEU ILE ASP THR ILE GLU ARG SEQRES 7 A 550 LEU GLY ILE SER TYR HIS PHE GLU LYS GLU ILE ASP ASP SEQRES 8 A 550 ILE LEU ASP GLN ILE TYR ASN GLN ASN SER ASN CYS ASN SEQRES 9 A 550 ASP LEU CYS THR SER ALA LEU GLN PHE ARG LEU LEU ARG SEQRES 10 A 550 GLN HIS GLY PHE ASN ILE SER PRO GLU ILE PHE SER LYS SEQRES 11 A 550 PHE GLN ASP GLU ASN GLY LYS PHE LYS GLU SER LEU ALA SEQRES 12 A 550 SER ASP VAL LEU GLY LEU LEU ASN LEU TYR GLU ALA SER SEQRES 13 A 550 HIS VAL ARG THR HIS ALA ASP ASP ILE LEU GLU ASP ALA SEQRES 14 A 550 LEU ALA PHE SER THR ILE HIS LEU GLU SER ALA ALA PRO SEQRES 15 A 550 HIS LEU LYS SER PRO LEU ARG GLU GLN VAL THR HIS ALA SEQRES 16 A 550 LEU GLU GLN CYS LEU HIS LYS GLY VAL PRO ARG VAL GLU SEQRES 17 A 550 THR ARG PHE PHE ILE SER SER ILE TYR ASP LYS GLU GLN SEQRES 18 A 550 SER LYS ASN ASN VAL LEU LEU ARG PHE ALA LYS LEU ASP SEQRES 19 A 550 PHE ASN LEU LEU GLN MET LEU HIS LYS GLN GLU LEU ALA SEQRES 20 A 550 GLN VAL SER ARG TRP TRP LYS ASP LEU ASP PHE VAL THR SEQRES 21 A 550 THR LEU PRO TYR ALA ARG ASP ARG VAL VAL GLU CYS TYR SEQRES 22 A 550 PHE TRP ALA LEU GLY VAL TYR PHE GLU PRO GLN TYR SER SEQRES 23 A 550 GLN ALA ARG VAL MET LEU VAL LYS THR ILE SER MET ILE SEQRES 24 A 550 SER ILE VAL ASP ASP THR PHE ASP ALA TYR GLY THR VAL SEQRES 25 A 550 LYS GLU LEU GLU ALA TYR THR ASP ALA ILE GLN ARG TRP SEQRES 26 A 550 ASP ILE ASN GLU ILE ASP ARG LEU PRO ASP TYR MET LYS SEQRES 27 A 550 ILE SER TYR LYS ALA ILE LEU ASP LEU TYR LYS ASP TYR SEQRES 28 A 550 GLU LYS GLU LEU SER SER ALA GLY ARG SER HIS ILE VAL SEQRES 29 A 550 CYS HIS ALA ILE GLU ARG MET LYS GLU VAL VAL ARG ASN SEQRES 30 A 550 TYR ASN VAL GLU SER THR TRP PHE ILE GLU GLY TYR THR SEQRES 31 A 550 PRO PRO VAL SER GLU TYR LEU SER ASN ALA LEU ALA THR SEQRES 32 A 550 THR THR TYR TYR TYR LEU ALA THR THR SER TYR LEU GLY SEQRES 33 A 550 MET LYS SER ALA THR GLU GLN ASP PHE GLU TRP LEU SER SEQRES 34 A 550 LYS ASN PRO LYS ILE LEU GLU ALA SER VAL ILE ILE CYS SEQRES 35 A 550 ARG VAL ILE ASP ASP THR ALA THR TYR GLU VAL GLU LYS SEQRES 36 A 550 SER ARG GLY GLN ILE ALA THR GLY ILE GLU CYS CYS MET SEQRES 37 A 550 ARG ASP TYR GLY ILE SER THR LYS GLU ALA MET ALA LYS SEQRES 38 A 550 PHE GLN ASN MET ALA GLU THR ALA TRP LYS ASP ILE ASN SEQRES 39 A 550 GLU GLY LEU LEU ARG PRO THR PRO VAL SER THR GLU PHE SEQRES 40 A 550 LEU THR PRO ILE LEU ASN LEU ALA ARG ILE VAL GLU VAL SEQRES 41 A 550 THR TYR ILE HIS ASN LEU ASP GLY TYR THR HIS PRO GLU SEQRES 42 A 550 LYS VAL LEU LYS PRO HIS ILE ILE ASN LEU LEU VAL ASP SEQRES 43 A 550 SER ILE LYS ILE HET MG A 601 1 HET MG A 602 1 HET MG A 603 1 HET A4S A 604 26 HET 1GA A 605 17 HET DPO A 606 9 HET ACT A 607 4 HETNAM MG MAGNESIUM ION HETNAM A4S (2E,6E)-3,7-DIMETHYL-8-(PHENYLAMINO)OCTA-2,6-DIEN-1-YL HETNAM 2 A4S TRIHYDROGEN DIPHOSPHATE HETNAM 1GA GERANILINE HETNAM DPO DIPHOSPHATE HETNAM ACT ACETATE ION HETSYN A4S ANILINOGERANYL DIPHOSPHATE HETSYN 1GA (4E,8E)-4,8-DIMETHYL-2-AZABICYCLO[9.2.2]PENTADECA- HETSYN 2 1GA 1(13),4,8,11,14-PENTAENE FORMUL 2 MG 3(MG 2+) FORMUL 5 A4S C16 H25 N O7 P2 FORMUL 6 1GA C16 H21 N FORMUL 7 DPO O7 P2 4- FORMUL 8 ACT C2 H3 O2 1- FORMUL 9 HOH *57(H2 O) HELIX 1 1 LYS A 35 LEU A 58 1 24 HELIX 2 2 LYS A 63 LEU A 77 1 15 HELIX 3 3 ILE A 79 HIS A 82 5 4 HELIX 4 4 PHE A 83 ASN A 96 1 14 HELIX 5 5 ASP A 103 HIS A 117 1 15 HELIX 6 6 SER A 122 GLN A 130 5 9 HELIX 7 7 LYS A 137 ALA A 141 5 5 HELIX 8 8 ASP A 143 SER A 154 1 12 HELIX 9 9 HIS A 155 ARG A 157 5 3 HELIX 10 10 ASP A 161 GLU A 165 5 5 HELIX 11 11 ASP A 166 ALA A 179 1 14 HELIX 12 12 PRO A 180 LEU A 182 5 3 HELIX 13 13 PRO A 185 GLN A 196 1 12 HELIX 14 14 VAL A 202 ILE A 214 1 13 HELIX 15 15 TYR A 215 GLU A 218 5 4 HELIX 16 16 ASN A 222 ASP A 253 1 32 HELIX 17 17 ASP A 255 LEU A 260 1 6 HELIX 18 18 ARG A 266 TYR A 278 1 13 HELIX 19 19 GLU A 280 GLN A 282 5 3 HELIX 20 20 TYR A 283 TYR A 307 1 25 HELIX 21 21 THR A 309 TRP A 323 1 15 HELIX 22 22 ASP A 324 LEU A 331 5 8 HELIX 23 23 PRO A 332 LEU A 353 1 22 HELIX 24 24 SER A 354 GLY A 357 5 4 HELIX 25 25 ARG A 358 HIS A 360 5 3 HELIX 26 26 ILE A 361 GLY A 386 1 26 HELIX 27 27 PRO A 390 LEU A 399 1 10 HELIX 28 28 ALA A 400 THR A 402 5 3 HELIX 29 29 THR A 403 TYR A 412 1 10 HELIX 30 30 THR A 419 LYS A 428 1 10 HELIX 31 31 PRO A 430 THR A 448 1 19 HELIX 32 32 THR A 460 GLY A 470 1 11 HELIX 33 33 SER A 472 LEU A 495 1 24 HELIX 34 34 SER A 502 PHE A 505 5 4 HELIX 35 35 LEU A 506 TYR A 520 1 15 HELIX 36 36 ILE A 521 LEU A 524 5 4 HELIX 37 37 VAL A 533 VAL A 543 1 11 LINK OD2 ASP A 301 MG MG A 601 1555 1555 2.83 LINK OD1 ASP A 301 MG MG A 602 1555 1555 2.29 LINK OD2 ASP A 305 MG MG A 601 1555 1555 2.99 LINK OD2 ASP A 305 MG MG A 602 1555 1555 2.40 LINK OG1 THR A 448 MG MG A 603 1555 1555 2.51 LINK MG MG A 601 O22AA4S A 604 1555 1555 2.65 LINK MG MG A 601 O3 BDPO A 606 1555 1555 2.42 LINK MG MG A 602 O18AA4S A 604 1555 1555 2.09 LINK MG MG A 602 O19AA4S A 604 1555 1555 2.96 LINK MG MG A 602 O5 BDPO A 606 1555 1555 2.09 LINK MG MG A 602 O3 BDPO A 606 1555 1555 2.94 LINK MG MG A 602 O4 BDPO A 606 1555 1555 2.98 LINK MG MG A 603 O23AA4S A 604 1555 1555 2.60 LINK MG MG A 603 O1 BDPO A 606 1555 1555 2.79 CISPEP 1 SER A 184 PRO A 185 0 5.90 CISPEP 2 ARG A 497 PRO A 498 0 -2.82 SITE 1 AC1 5 ASP A 301 ASP A 305 GLU A 379 A4S A 604 SITE 2 AC1 5 DPO A 606 SITE 1 AC2 4 ASP A 301 ASP A 305 A4S A 604 DPO A 606 SITE 1 AC3 6 ASP A 444 ASP A 445 THR A 448 GLU A 452 SITE 2 AC3 6 A4S A 604 DPO A 606 SITE 1 AC4 18 ARG A 264 TRP A 273 ILE A 294 ILE A 297 SITE 2 AC4 18 SER A 298 ASP A 305 THR A 402 THR A 403 SITE 3 AC4 18 LEU A 407 CYS A 440 ARG A 441 ASP A 444 SITE 4 AC4 18 GLU A 452 TYR A 520 TYR A 527 MG A 601 SITE 5 AC4 18 MG A 602 MG A 603 SITE 1 AC5 8 ARG A 264 TRP A 273 THR A 402 THR A 403 SITE 2 AC5 8 LEU A 407 TYR A 520 TYR A 527 DPO A 606 SITE 1 AC6 10 ARG A 264 ASP A 301 ASP A 305 ARG A 441 SITE 2 AC6 10 ASP A 444 GLU A 452 MG A 601 MG A 602 SITE 3 AC6 10 MG A 603 1GA A 605 SITE 1 AC7 7 SER A 154 HIS A 155 ARG A 157 LYS A 200 SITE 2 AC7 7 GLU A 485 TRP A 488 ASN A 492 CRYST1 126.750 126.750 124.300 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007890 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007890 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008045 0.00000