HEADER OXIDOREDUCTASE 30-OCT-14 4RPE TITLE CRYSTAL STRUCTURE OF VARIANT G186E FROM PSEUDOMONAS AERUGINOSA TITLE 2 LIPOXYGENASE 2 AT 1.60A (C2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LINOLEATE 9/13-LIPOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SECRETABLE PA_LOX WITHOUT THE PERIPLASMIC SIGNAL PEPTIDE COMPND 5 (UNP RESIDUES 19-685); COMPND 6 SYNONYM: OLEATE 10S-LIPOXYGENASE, 15S-LIPOXYGENASE; COMPND 7 EC: 1.13.11.-, 1.13.11.58, 1.13.11.77; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: LOX; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NON-HEME IRON ENZYME, PROTEIN-PHOSPHOLIPID COMPLEX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR X.CARPENA,A.GARRETA,L.HERRERO,I.FITA REVDAT 3 28-FEB-24 4RPE 1 REMARK SEQADV LINK REVDAT 2 22-NOV-17 4RPE 1 REMARK REVDAT 1 04-NOV-15 4RPE 0 JRNL AUTH X.CARPENA,A.GARRETA,L.HERRERO,I.FITA JRNL TITL CRYSTAL STRUCTURE OF LIPOXYGENASE 2 IN SPACE GROUP C2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 80313 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4253 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5857 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 290 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5078 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 478 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.86000 REMARK 3 B22 (A**2) : -0.38000 REMARK 3 B33 (A**2) : -0.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.50000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.120 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.748 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.917 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5457 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5290 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7469 ; 1.905 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12168 ; 0.982 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 709 ; 6.290 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 233 ;31.900 ;23.176 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 863 ;14.846 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;20.785 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 842 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6269 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1249 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2735 ; 1.350 ; 1.575 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2734 ; 1.350 ; 1.575 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3449 ; 1.889 ; 2.365 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3450 ; 1.888 ; 2.365 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2721 ; 1.672 ; 1.713 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2722 ; 1.671 ; 1.713 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4010 ; 2.468 ; 2.509 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6827 ; 4.573 ;13.375 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6643 ; 4.428 ;13.142 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RPE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087631. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9334 REMARK 200 MONOCHROMATOR : DIAMOND(001) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84566 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 19.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, PH 7.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 42.31500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.44000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 42.31500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 48.44000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 SER A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 LEU A 11 REMARK 465 VAL A 12 REMARK 465 PRO A 13 REMARK 465 ARG A 14 REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 HIS A 17 REMARK 465 MET A 18 REMARK 465 ALA A 19 REMARK 465 ASN A 20 REMARK 465 ASP A 21 REMARK 465 GLN A 202 REMARK 465 GLY A 203 REMARK 465 GLY A 204 REMARK 465 GLN A 205 REMARK 465 GLY A 206 REMARK 465 ASP A 207 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB ALA A 391 OE1 GLU A 521 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD ARG A 43 CD ARG A 43 2555 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 40 N ASP A 40 CA 0.122 REMARK 500 TYR A 480 CE1 TYR A 480 CZ -0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 23 CG1 - CB - CG2 ANGL. DEV. = -14.0 DEGREES REMARK 500 ASP A 40 CA - C - O ANGL. DEV. = 13.9 DEGREES REMARK 500 LEU A 46 CB - CG - CD1 ANGL. DEV. = -11.8 DEGREES REMARK 500 ARG A 66 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP A 231 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 282 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 GLU A 386 OE1 - CD - OE2 ANGL. DEV. = -8.2 DEGREES REMARK 500 ARG A 457 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 457 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 467 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 481 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 678 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 31 71.19 -105.98 REMARK 500 ASN A 85 -2.46 70.95 REMARK 500 ASP A 160 64.18 -161.91 REMARK 500 THR A 381 -81.64 -112.37 REMARK 500 SER A 552 -81.88 -105.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 8PE A 702 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 701 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 377 NE2 REMARK 620 2 HIS A 382 NE2 88.4 REMARK 620 3 HIS A 555 NE2 104.4 91.5 REMARK 620 4 ASN A 559 OD1 87.9 174.3 93.6 REMARK 620 5 ILE A 685 O 165.1 94.2 90.2 88.4 REMARK 620 6 HOH A 824 O 84.8 89.0 170.8 86.4 80.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 8PE A 702 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4G32 RELATED DB: PDB REMARK 900 LIPOXYGENASE VARIANT WITH MUTATION G186E REMARK 900 RELATED ID: 4G33 RELATED DB: PDB REMARK 900 LIPOXYGENASE VARIANT WITH MUTATION G186E DBREF 4RPE A 19 685 UNP Q8RNT4 LOX_PSEAI 19 685 SEQADV 4RPE MET A -2 UNP Q8RNT4 EXPRESSION TAG SEQADV 4RPE GLY A -1 UNP Q8RNT4 EXPRESSION TAG SEQADV 4RPE SER A 0 UNP Q8RNT4 EXPRESSION TAG SEQADV 4RPE SER A 1 UNP Q8RNT4 EXPRESSION TAG SEQADV 4RPE HIS A 2 UNP Q8RNT4 EXPRESSION TAG SEQADV 4RPE HIS A 3 UNP Q8RNT4 EXPRESSION TAG SEQADV 4RPE HIS A 4 UNP Q8RNT4 EXPRESSION TAG SEQADV 4RPE HIS A 5 UNP Q8RNT4 EXPRESSION TAG SEQADV 4RPE HIS A 6 UNP Q8RNT4 EXPRESSION TAG SEQADV 4RPE HIS A 7 UNP Q8RNT4 EXPRESSION TAG SEQADV 4RPE SER A 8 UNP Q8RNT4 EXPRESSION TAG SEQADV 4RPE SER A 9 UNP Q8RNT4 EXPRESSION TAG SEQADV 4RPE GLY A 10 UNP Q8RNT4 EXPRESSION TAG SEQADV 4RPE LEU A 11 UNP Q8RNT4 EXPRESSION TAG SEQADV 4RPE VAL A 12 UNP Q8RNT4 EXPRESSION TAG SEQADV 4RPE PRO A 13 UNP Q8RNT4 EXPRESSION TAG SEQADV 4RPE ARG A 14 UNP Q8RNT4 EXPRESSION TAG SEQADV 4RPE GLY A 15 UNP Q8RNT4 EXPRESSION TAG SEQADV 4RPE SER A 16 UNP Q8RNT4 EXPRESSION TAG SEQADV 4RPE HIS A 17 UNP Q8RNT4 EXPRESSION TAG SEQADV 4RPE MET A 18 UNP Q8RNT4 EXPRESSION TAG SEQADV 4RPE GLU A 186 UNP Q8RNT4 GLY 186 ENGINEERED MUTATION SEQRES 1 A 688 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 688 LEU VAL PRO ARG GLY SER HIS MET ALA ASN ASP SER ILE SEQRES 3 A 688 PHE PHE SER PRO LEU LYS TYR LEU GLY ALA GLU GLN GLN SEQRES 4 A 688 ARG SER ILE ASP ALA SER ARG SER LEU LEU ASP ASN LEU SEQRES 5 A 688 ILE PRO PRO SER LEU PRO GLN TYR ASP ASN LEU ALA GLY SEQRES 6 A 688 LYS LEU ALA ARG ARG ALA VAL LEU THR SER LYS LYS LEU SEQRES 7 A 688 VAL TYR VAL TRP THR GLU ASN PHE ALA ASN VAL LYS GLY SEQRES 8 A 688 VAL PRO MET ALA ARG SER VAL PRO LEU GLY GLU LEU PRO SEQRES 9 A 688 ASN VAL ASP TRP LEU LEU LYS THR ALA GLY VAL ILE VAL SEQRES 10 A 688 GLU LEU ILE VAL ASN PHE VAL ALA SER LEU PRO ALA SER SEQRES 11 A 688 ALA ALA ALA GLN PHE GLU ARG ILE ALA ALA GLY LEU SER SEQRES 12 A 688 GLY ASP LEU GLU ALA ALA ARG GLN VAL HIS GLU ALA LEU SEQRES 13 A 688 LEU GLU GLU ALA LYS ASN ASP PRO ALA ALA ALA GLY SER SEQRES 14 A 688 LEU LEU LEU ARG PHE THR GLU LEU GLN THR ARG VAL ILE SEQRES 15 A 688 ALA LEU LEU THR ARG VAL GLU LEU LEU VAL ASP ASP ILE SEQRES 16 A 688 LEU LYS SER ALA SER ASN LEU VAL THR GLN GLY GLY GLN SEQRES 17 A 688 GLY ASP GLY LEU ASN ARG PHE ARG ALA VAL PHE GLY THR SEQRES 18 A 688 LEU ARG LEU PRO GLU VAL ALA ASP SER PHE ARG ASP ASP SEQRES 19 A 688 GLU ALA PHE ALA TYR TRP ARG VAL ALA GLY PRO ASN PRO SEQRES 20 A 688 LEU LEU ILE ARG ARG VAL ASP ALA LEU PRO ALA ASN PHE SEQRES 21 A 688 PRO LEU GLY GLU GLU GLN PHE ARG ARG VAL MET GLY ALA SEQRES 22 A 688 ASP ASP SER LEU LEU GLU ALA ALA ALA SER ARG ARG LEU SEQRES 23 A 688 TYR LEU LEU ASP TYR ALA GLU LEU GLY LYS LEU ALA PRO SEQRES 24 A 688 SER GLY ALA VAL ASP LYS LEU LEU THR GLY THR GLY PHE SEQRES 25 A 688 ALA TYR ALA PRO ILE ALA LEU PHE ALA LEU GLY LYS ASP SEQRES 26 A 688 ARG ALA GLY LEU LEU PRO VAL ALA ILE GLN CYS GLY GLN SEQRES 27 A 688 ASP PRO ALA THR HIS PRO MET PHE VAL ARG PRO ALA GLU SEQRES 28 A 688 SER GLU SER ASP LEU TYR TRP GLY TRP GLN MET ALA LYS SEQRES 29 A 688 THR VAL VAL GLN VAL ALA GLU GLU ASN TYR HIS GLU MET SEQRES 30 A 688 PHE VAL HIS LEU ALA GLN THR HIS LEU VAL SER GLU ALA SEQRES 31 A 688 PHE CYS LEU ALA THR GLN ARG THR LEU ALA PRO SER HIS SEQRES 32 A 688 PRO LEU HIS VAL LEU LEU ALA PRO HIS PHE GLU GLY THR SEQRES 33 A 688 LEU PHE ILE ASN GLU GLY ALA ALA ARG ILE LEU LEU PRO SEQRES 34 A 688 SER ALA GLY PHE ILE ASP VAL MET PHE ALA ALA PRO ILE SEQRES 35 A 688 GLN ASP THR GLN ALA THR ALA GLY GLY ASN ARG LEU GLY SEQRES 36 A 688 PHE ASP PHE TYR ARG GLY MET LEU PRO GLU SER LEU LYS SEQRES 37 A 688 ALA ARG ASN VAL ASP ASP PRO ALA ALA LEU PRO ASP TYR SEQRES 38 A 688 PRO TYR ARG ASP ASP GLY LEU LEU VAL TRP ASN ALA ILE SEQRES 39 A 688 ARG GLN TRP ALA ALA ASP TYR VAL ALA VAL TYR TYR ALA SEQRES 40 A 688 SER ASP GLY ASP VAL THR ALA ASP VAL GLU LEU ALA ALA SEQRES 41 A 688 TRP VAL GLY GLU VAL ILE GLY SER GLY LYS VAL ALA GLY SEQRES 42 A 688 PHE ARG PRO ILE THR GLY ARG SER GLN LEU VAL GLU VAL SEQRES 43 A 688 LEU THR MET VAL ILE PHE THR ALA SER ALA GLN HIS ALA SEQRES 44 A 688 ALA VAL ASN PHE PRO GLN PRO SER MET MET THR TYR ALA SEQRES 45 A 688 PRO ALA ILE CYS ALA MET SER ALA ALA PRO ALA PRO ASP SEQRES 46 A 688 SER PRO SER GLY LYS SER GLU ALA ASP TRP LEU LYS MET SEQRES 47 A 688 MET PRO PRO THR LEU VAL ALA LEU GLU LYS VAL ASN ILE SEQRES 48 A 688 TYR HIS LEU LEU GLY SER VAL TYR HIS GLY ARG LEU GLY SEQRES 49 A 688 ASP TYR ARG GLN THR GLY PHE PRO TYR ALA PRO VAL PHE SEQRES 50 A 688 SER ASP ARG ARG VAL THR ALA SER GLY GLY PRO LEU GLU SEQRES 51 A 688 ARG PHE GLN ALA ARG LEU LYS GLU VAL GLU ALA THR ILE SEQRES 52 A 688 ARG THR ARG ASN GLN ALA ARG ARG LYS PRO TYR GLU TYR SEQRES 53 A 688 LEU LEU PRO SER ARG ILE PRO ALA SER THR ASN ILE HET FE2 A 701 1 HET 8PE A 702 45 HETNAM FE2 FE (II) ION HETNAM 8PE (2R)-3-{[(S)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-2- HETNAM 2 8PE (TETRADECANOYLOXY)PROPYL OCTADECANOATE HETSYN 8PE 3-SN-PHOSPHATIDYLETHANOLAMINE FORMUL 2 FE2 FE 2+ FORMUL 3 8PE C37 H74 N O8 P FORMUL 4 HOH *478(H2 O) HELIX 1 1 PHE A 25 LYS A 29 5 5 HELIX 2 2 GLY A 32 ASN A 48 1 17 HELIX 3 3 LEU A 54 ASP A 58 5 5 HELIX 4 4 ASN A 59 TYR A 77 1 19 HELIX 5 5 PRO A 96 LEU A 100 5 5 HELIX 6 6 ASN A 102 SER A 123 1 22 HELIX 7 7 PRO A 125 ALA A 130 1 6 HELIX 8 8 PHE A 132 ASP A 160 1 29 HELIX 9 9 PRO A 161 SER A 166 5 6 HELIX 10 10 LEU A 167 VAL A 200 1 34 HELIX 11 11 LEU A 209 VAL A 215 1 7 HELIX 12 12 GLU A 223 PHE A 228 1 6 HELIX 13 13 ASP A 230 GLY A 241 1 12 HELIX 14 14 GLY A 260 GLY A 269 1 10 HELIX 15 15 SER A 273 SER A 280 1 8 HELIX 16 16 ALA A 289 ALA A 295 5 7 HELIX 17 17 GLU A 350 PHE A 375 1 26 HELIX 18 18 THR A 381 LEU A 396 1 16 HELIX 19 19 HIS A 400 ALA A 407 1 8 HELIX 20 20 PRO A 408 GLU A 411 5 4 HELIX 21 21 GLY A 412 LEU A 424 1 13 HELIX 22 22 GLY A 429 PHE A 435 1 7 HELIX 23 23 PRO A 438 PHE A 453 1 16 HELIX 24 24 MET A 459 ARG A 467 1 9 HELIX 25 25 TYR A 478 TYR A 503 1 26 HELIX 26 26 SER A 505 ALA A 511 1 7 HELIX 27 27 ASP A 512 SER A 525 1 14 HELIX 28 28 GLY A 536 SER A 552 1 17 HELIX 29 29 SER A 552 PHE A 560 1 9 HELIX 30 30 PRO A 561 MET A 566 1 6 HELIX 31 31 SER A 588 LYS A 594 1 7 HELIX 32 32 PRO A 598 GLY A 613 1 16 HELIX 33 33 ASP A 636 ALA A 641 1 6 HELIX 34 34 GLY A 644 ARG A 667 1 24 HELIX 35 35 LEU A 675 ILE A 679 5 5 SHEET 1 A 2 TRP A 79 THR A 80 0 SHEET 2 A 2 MET A 91 ALA A 92 -1 O MET A 91 N THR A 80 SHEET 1 B 5 ARG A 248 ARG A 249 0 SHEET 2 B 5 LEU A 283 ASP A 287 -1 O LEU A 285 N ARG A 248 SHEET 3 B 5 ILE A 314 LEU A 319 -1 O ALA A 315 N LEU A 286 SHEET 4 B 5 LEU A 326 GLN A 332 -1 O ALA A 330 N LEU A 316 SHEET 5 B 5 MET A 342 VAL A 344 -1 O PHE A 343 N ILE A 331 SHEET 1 C 2 VAL A 300 LYS A 302 0 SHEET 2 C 2 GLY A 306 GLY A 308 -1 O GLY A 308 N VAL A 300 LINK NE2 HIS A 377 FE FE2 A 701 1555 1555 2.23 LINK NE2 HIS A 382 FE FE2 A 701 1555 1555 2.15 LINK NE2 HIS A 555 FE FE2 A 701 1555 1555 2.18 LINK OD1 ASN A 559 FE FE2 A 701 1555 1555 2.08 LINK O ILE A 685 FE FE2 A 701 1555 1555 2.37 LINK FE FE2 A 701 O HOH A 824 1555 1555 2.21 CISPEP 1 PHE A 628 PRO A 629 0 7.54 SITE 1 AC1 6 HIS A 377 HIS A 382 HIS A 555 ASN A 559 SITE 2 AC1 6 ILE A 685 HOH A 824 SITE 1 AC2 16 SER A 22 ILE A 23 GLU A 186 GLU A 373 SITE 2 AC2 16 HIS A 382 PHE A 415 ILE A 416 ALA A 420 SITE 3 AC2 16 ARG A 422 ILE A 423 LEU A 424 ASN A 607 SITE 4 AC2 16 TYR A 609 ILE A 685 HOH A1236 HOH A1272 CRYST1 84.630 96.880 87.320 90.00 107.22 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011816 0.000000 0.003662 0.00000 SCALE2 0.000000 0.010322 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011990 0.00000