HEADER ISOMERASE 30-OCT-14 4RPL TITLE CRYSTAL STRUCTURE OF MICOBACTERIUM TUBERCULOSIS UDP-GALACTOPYRANOSE TITLE 2 MUTASE IN COMPLEX WITH TETRAFLUORINATED SUBSTRATE ANALOG UDP-F4-GALP COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GALACTOPYRANOSE MUTASE; COMPND 3 CHAIN: B, A, C; COMPND 4 SYNONYM: UGM, UDP-GALP MUTASE, URIDINE 5-DIPHOSPHATE GALACTOPYRANOSE COMPND 5 MUTASE; COMPND 6 EC: 5.4.99.9; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: ATCC 25618 / H37RV; SOURCE 5 GENE: GLF, GLFA, RV3809C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST-HIS-MBP KEYWDS UDP-GALACTOPYRANOSE MUTASE, MTUGM, FLAVOENZYME, FAD, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.E.VAN STRAATEN,D.A.R.SANDERS REVDAT 5 20-SEP-23 4RPL 1 REMARK SEQADV REVDAT 4 22-NOV-17 4RPL 1 REMARK REVDAT 3 11-FEB-15 4RPL 1 JRNL REVDAT 2 04-FEB-15 4RPL 1 JRNL REVDAT 1 21-JAN-15 4RPL 0 JRNL AUTH K.E.VAN STRAATEN,J.R.KUTTIYATVEETIL,C.M.SEVRAIN, JRNL AUTH 2 S.A.VILLAUME,J.JIMENEZ-BARBERO,B.LINCLAU,S.P.VINCENT, JRNL AUTH 3 D.A.SANDERS JRNL TITL STRUCTURAL BASIS OF LIGAND BINDING TO UDP-GALACTOPYRANOSE JRNL TITL 2 MUTASE FROM MYCOBACTERIUM TUBERCULOSIS USING SUBSTRATE AND JRNL TITL 3 TETRAFLUORINATED SUBSTRATE ANALOGUES. JRNL REF J.AM.CHEM.SOC. V. 137 1230 2015 JRNL REFN ISSN 0002-7863 JRNL PMID 25562380 JRNL DOI 10.1021/JA511204P REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 74306 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3716 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.6367 - 6.1034 1.00 3630 191 0.1889 0.2037 REMARK 3 2 6.1034 - 4.8459 1.00 3572 188 0.1872 0.2219 REMARK 3 3 4.8459 - 4.2337 1.00 3548 186 0.1642 0.2127 REMARK 3 4 4.2337 - 3.8468 1.00 3551 187 0.1870 0.2263 REMARK 3 5 3.8468 - 3.5712 1.00 3523 186 0.2035 0.2266 REMARK 3 6 3.5712 - 3.3607 1.00 3541 186 0.2089 0.2491 REMARK 3 7 3.3607 - 3.1924 1.00 3508 185 0.2423 0.3188 REMARK 3 8 3.1924 - 3.0535 1.00 3536 186 0.2467 0.2797 REMARK 3 9 3.0535 - 2.9359 1.00 3515 185 0.2553 0.3036 REMARK 3 10 2.9359 - 2.8346 1.00 3530 186 0.2445 0.2944 REMARK 3 11 2.8346 - 2.7460 1.00 3493 184 0.2633 0.3174 REMARK 3 12 2.7460 - 2.6675 1.00 3528 185 0.2627 0.3512 REMARK 3 13 2.6675 - 2.5973 1.00 3529 186 0.2726 0.3144 REMARK 3 14 2.5973 - 2.5339 1.00 3508 185 0.2803 0.3477 REMARK 3 15 2.5339 - 2.4763 1.00 3511 185 0.2725 0.3287 REMARK 3 16 2.4763 - 2.4236 1.00 3526 185 0.2776 0.3284 REMARK 3 17 2.4236 - 2.3752 1.00 3526 186 0.2785 0.3017 REMARK 3 18 2.3752 - 2.3303 1.00 3503 184 0.2771 0.3482 REMARK 3 19 2.3303 - 2.2887 1.00 3504 185 0.2842 0.3309 REMARK 3 20 2.2887 - 2.2499 1.00 3508 185 0.3192 0.3933 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 10300 REMARK 3 ANGLE : 0.595 14062 REMARK 3 CHIRALITY : 0.024 1458 REMARK 3 PLANARITY : 0.004 1811 REMARK 3 DIHEDRAL : 13.012 3807 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RPL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087638. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : ACCEL/BRUKER DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR (DCM), FEATURING REMARK 200 INDIRECTLY CRYO-COOLED FIRST REMARK 200 CRYSTAL AND SAGITTALLY FOCUSING REMARK 200 SECOND CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROCESS REMARK 200 DATA SCALING SOFTWARE : XSCALE, AUTOPROCESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74331 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 48.625 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.87400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.660 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: MTUGM IN COMPLEX WITH UDP-GALP (4RPG) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 5.5, 20% PEG 3350, REMARK 280 10MM HEXAMMINE COBALT (III) CHLORIDE, HANGING DROP VAPOR REMARK 280 DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 85.64500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.14500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 85.64500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 49.14500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 171.29000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 PRO B 3 REMARK 465 MET B 4 REMARK 465 GLN B 396 REMARK 465 ASP B 397 REMARK 465 GLY B 398 REMARK 465 ALA B 399 REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 PRO A 3 REMARK 465 MET A 4 REMARK 465 GLN A 396 REMARK 465 ASP A 397 REMARK 465 GLY A 398 REMARK 465 ALA A 399 REMARK 465 MET C 1 REMARK 465 GLN C 2 REMARK 465 PRO C 3 REMARK 465 MET C 4 REMARK 465 GLN C 396 REMARK 465 ASP C 397 REMARK 465 GLY C 398 REMARK 465 ALA C 399 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO B 103 -138.92 -86.74 REMARK 500 PRO B 271 30.63 -79.18 REMARK 500 VAL B 383 -63.77 -121.59 REMARK 500 PRO A 103 -136.02 -88.48 REMARK 500 TYR C 62 37.40 -99.84 REMARK 500 GLN C 167 -43.13 80.70 REMARK 500 GLN C 167 1.97 55.50 REMARK 500 THR C 179 -107.97 -81.29 REMARK 500 TYR C 185 25.25 -153.87 REMARK 500 PRO C 271 20.07 -78.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3UC B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3UC A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3UC C 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1V0J RELATED DB: PDB REMARK 900 HOLO MTUGM REMARK 900 RELATED ID: 4RPG RELATED DB: PDB REMARK 900 MTUGM IN COMPLEX WITH SUBSTRATE UDP-GALP REMARK 900 RELATED ID: 4RPH RELATED DB: PDB REMARK 900 MTUGM IN COMPLEX WITH SUBSTRATE UDP-GALP (REDUCED) REMARK 900 RELATED ID: 4RPJ RELATED DB: PDB REMARK 900 MTUGM IN COMPLEX WITH UDP REMARK 900 RELATED ID: 4RPK RELATED DB: PDB REMARK 900 MTUGM IN COMPLEX WITH TETRAFLUORINATED SUBSTRATE ANALOG UDP-F4-GALF DBREF 4RPL B 1 399 UNP P9WIQ1 GLF_MYCTU 1 399 DBREF 4RPL A 1 399 UNP P9WIQ1 GLF_MYCTU 1 399 DBREF 4RPL C 1 399 UNP P9WIQ1 GLF_MYCTU 1 399 SEQADV 4RPL ARG B 306 UNP P9WIQ1 PRO 306 ENGINEERED MUTATION SEQADV 4RPL ARG A 306 UNP P9WIQ1 PRO 306 ENGINEERED MUTATION SEQADV 4RPL ARG C 306 UNP P9WIQ1 PRO 306 ENGINEERED MUTATION SEQRES 1 B 399 MET GLN PRO MET THR ALA ARG PHE ASP LEU PHE VAL VAL SEQRES 2 B 399 GLY SER GLY PHE PHE GLY LEU THR ILE ALA GLU ARG VAL SEQRES 3 B 399 ALA THR GLN LEU ASP LYS ARG VAL LEU VAL LEU GLU ARG SEQRES 4 B 399 ARG PRO HIS ILE GLY GLY ASN ALA TYR SER GLU ALA GLU SEQRES 5 B 399 PRO GLN THR GLY ILE GLU VAL HIS LYS TYR GLY ALA HIS SEQRES 6 B 399 LEU PHE HIS THR SER ASN LYS ARG VAL TRP ASP TYR VAL SEQRES 7 B 399 ARG GLN PHE THR ASP PHE THR ASP TYR ARG HIS ARG VAL SEQRES 8 B 399 PHE ALA MET HIS ASN GLY GLN ALA TYR GLN PHE PRO MET SEQRES 9 B 399 GLY LEU GLY LEU VAL SER GLN PHE PHE GLY LYS TYR PHE SEQRES 10 B 399 THR PRO GLU GLN ALA ARG GLN LEU ILE ALA GLU GLN ALA SEQRES 11 B 399 ALA GLU ILE ASP THR ALA ASP ALA GLN ASN LEU GLU GLU SEQRES 12 B 399 LYS ALA ILE SER LEU ILE GLY ARG PRO LEU TYR GLU ALA SEQRES 13 B 399 PHE VAL LYS GLY TYR THR ALA LYS GLN TRP GLN THR ASP SEQRES 14 B 399 PRO LYS GLU LEU PRO ALA ALA ASN ILE THR ARG LEU PRO SEQRES 15 B 399 VAL ARG TYR THR PHE ASP ASN ARG TYR PHE SER ASP THR SEQRES 16 B 399 TYR GLU GLY LEU PRO THR ASP GLY TYR THR ALA TRP LEU SEQRES 17 B 399 GLN ASN MET ALA ALA ASP HIS ARG ILE GLU VAL ARG LEU SEQRES 18 B 399 ASN THR ASP TRP PHE ASP VAL ARG GLY GLN LEU ARG PRO SEQRES 19 B 399 GLY SER PRO ALA ALA PRO VAL VAL TYR THR GLY PRO LEU SEQRES 20 B 399 ASP ARG TYR PHE ASP TYR ALA GLU GLY ARG LEU GLY TRP SEQRES 21 B 399 ARG THR LEU ASP PHE GLU VAL GLU VAL LEU PRO ILE GLY SEQRES 22 B 399 ASP PHE GLN GLY THR ALA VAL MET ASN TYR ASN ASP LEU SEQRES 23 B 399 ASP VAL PRO TYR THR ARG ILE HIS GLU PHE ARG HIS PHE SEQRES 24 B 399 HIS PRO GLU ARG ASP TYR ARG THR ASP LYS THR VAL ILE SEQRES 25 B 399 MET ARG GLU TYR SER ARG PHE ALA GLU ASP ASP ASP GLU SEQRES 26 B 399 PRO TYR TYR PRO ILE ASN THR GLU ALA ASP ARG ALA LEU SEQRES 27 B 399 LEU ALA THR TYR ARG ALA ARG ALA LYS SER GLU THR ALA SEQRES 28 B 399 SER SER LYS VAL LEU PHE GLY GLY ARG LEU GLY THR TYR SEQRES 29 B 399 GLN TYR LEU ASP MET HIS MET ALA ILE ALA SER ALA LEU SEQRES 30 B 399 ASN MET TYR ASP ASN VAL LEU ALA PRO HIS LEU ARG ASP SEQRES 31 B 399 GLY VAL PRO LEU LEU GLN ASP GLY ALA SEQRES 1 A 399 MET GLN PRO MET THR ALA ARG PHE ASP LEU PHE VAL VAL SEQRES 2 A 399 GLY SER GLY PHE PHE GLY LEU THR ILE ALA GLU ARG VAL SEQRES 3 A 399 ALA THR GLN LEU ASP LYS ARG VAL LEU VAL LEU GLU ARG SEQRES 4 A 399 ARG PRO HIS ILE GLY GLY ASN ALA TYR SER GLU ALA GLU SEQRES 5 A 399 PRO GLN THR GLY ILE GLU VAL HIS LYS TYR GLY ALA HIS SEQRES 6 A 399 LEU PHE HIS THR SER ASN LYS ARG VAL TRP ASP TYR VAL SEQRES 7 A 399 ARG GLN PHE THR ASP PHE THR ASP TYR ARG HIS ARG VAL SEQRES 8 A 399 PHE ALA MET HIS ASN GLY GLN ALA TYR GLN PHE PRO MET SEQRES 9 A 399 GLY LEU GLY LEU VAL SER GLN PHE PHE GLY LYS TYR PHE SEQRES 10 A 399 THR PRO GLU GLN ALA ARG GLN LEU ILE ALA GLU GLN ALA SEQRES 11 A 399 ALA GLU ILE ASP THR ALA ASP ALA GLN ASN LEU GLU GLU SEQRES 12 A 399 LYS ALA ILE SER LEU ILE GLY ARG PRO LEU TYR GLU ALA SEQRES 13 A 399 PHE VAL LYS GLY TYR THR ALA LYS GLN TRP GLN THR ASP SEQRES 14 A 399 PRO LYS GLU LEU PRO ALA ALA ASN ILE THR ARG LEU PRO SEQRES 15 A 399 VAL ARG TYR THR PHE ASP ASN ARG TYR PHE SER ASP THR SEQRES 16 A 399 TYR GLU GLY LEU PRO THR ASP GLY TYR THR ALA TRP LEU SEQRES 17 A 399 GLN ASN MET ALA ALA ASP HIS ARG ILE GLU VAL ARG LEU SEQRES 18 A 399 ASN THR ASP TRP PHE ASP VAL ARG GLY GLN LEU ARG PRO SEQRES 19 A 399 GLY SER PRO ALA ALA PRO VAL VAL TYR THR GLY PRO LEU SEQRES 20 A 399 ASP ARG TYR PHE ASP TYR ALA GLU GLY ARG LEU GLY TRP SEQRES 21 A 399 ARG THR LEU ASP PHE GLU VAL GLU VAL LEU PRO ILE GLY SEQRES 22 A 399 ASP PHE GLN GLY THR ALA VAL MET ASN TYR ASN ASP LEU SEQRES 23 A 399 ASP VAL PRO TYR THR ARG ILE HIS GLU PHE ARG HIS PHE SEQRES 24 A 399 HIS PRO GLU ARG ASP TYR ARG THR ASP LYS THR VAL ILE SEQRES 25 A 399 MET ARG GLU TYR SER ARG PHE ALA GLU ASP ASP ASP GLU SEQRES 26 A 399 PRO TYR TYR PRO ILE ASN THR GLU ALA ASP ARG ALA LEU SEQRES 27 A 399 LEU ALA THR TYR ARG ALA ARG ALA LYS SER GLU THR ALA SEQRES 28 A 399 SER SER LYS VAL LEU PHE GLY GLY ARG LEU GLY THR TYR SEQRES 29 A 399 GLN TYR LEU ASP MET HIS MET ALA ILE ALA SER ALA LEU SEQRES 30 A 399 ASN MET TYR ASP ASN VAL LEU ALA PRO HIS LEU ARG ASP SEQRES 31 A 399 GLY VAL PRO LEU LEU GLN ASP GLY ALA SEQRES 1 C 399 MET GLN PRO MET THR ALA ARG PHE ASP LEU PHE VAL VAL SEQRES 2 C 399 GLY SER GLY PHE PHE GLY LEU THR ILE ALA GLU ARG VAL SEQRES 3 C 399 ALA THR GLN LEU ASP LYS ARG VAL LEU VAL LEU GLU ARG SEQRES 4 C 399 ARG PRO HIS ILE GLY GLY ASN ALA TYR SER GLU ALA GLU SEQRES 5 C 399 PRO GLN THR GLY ILE GLU VAL HIS LYS TYR GLY ALA HIS SEQRES 6 C 399 LEU PHE HIS THR SER ASN LYS ARG VAL TRP ASP TYR VAL SEQRES 7 C 399 ARG GLN PHE THR ASP PHE THR ASP TYR ARG HIS ARG VAL SEQRES 8 C 399 PHE ALA MET HIS ASN GLY GLN ALA TYR GLN PHE PRO MET SEQRES 9 C 399 GLY LEU GLY LEU VAL SER GLN PHE PHE GLY LYS TYR PHE SEQRES 10 C 399 THR PRO GLU GLN ALA ARG GLN LEU ILE ALA GLU GLN ALA SEQRES 11 C 399 ALA GLU ILE ASP THR ALA ASP ALA GLN ASN LEU GLU GLU SEQRES 12 C 399 LYS ALA ILE SER LEU ILE GLY ARG PRO LEU TYR GLU ALA SEQRES 13 C 399 PHE VAL LYS GLY TYR THR ALA LYS GLN TRP GLN THR ASP SEQRES 14 C 399 PRO LYS GLU LEU PRO ALA ALA ASN ILE THR ARG LEU PRO SEQRES 15 C 399 VAL ARG TYR THR PHE ASP ASN ARG TYR PHE SER ASP THR SEQRES 16 C 399 TYR GLU GLY LEU PRO THR ASP GLY TYR THR ALA TRP LEU SEQRES 17 C 399 GLN ASN MET ALA ALA ASP HIS ARG ILE GLU VAL ARG LEU SEQRES 18 C 399 ASN THR ASP TRP PHE ASP VAL ARG GLY GLN LEU ARG PRO SEQRES 19 C 399 GLY SER PRO ALA ALA PRO VAL VAL TYR THR GLY PRO LEU SEQRES 20 C 399 ASP ARG TYR PHE ASP TYR ALA GLU GLY ARG LEU GLY TRP SEQRES 21 C 399 ARG THR LEU ASP PHE GLU VAL GLU VAL LEU PRO ILE GLY SEQRES 22 C 399 ASP PHE GLN GLY THR ALA VAL MET ASN TYR ASN ASP LEU SEQRES 23 C 399 ASP VAL PRO TYR THR ARG ILE HIS GLU PHE ARG HIS PHE SEQRES 24 C 399 HIS PRO GLU ARG ASP TYR ARG THR ASP LYS THR VAL ILE SEQRES 25 C 399 MET ARG GLU TYR SER ARG PHE ALA GLU ASP ASP ASP GLU SEQRES 26 C 399 PRO TYR TYR PRO ILE ASN THR GLU ALA ASP ARG ALA LEU SEQRES 27 C 399 LEU ALA THR TYR ARG ALA ARG ALA LYS SER GLU THR ALA SEQRES 28 C 399 SER SER LYS VAL LEU PHE GLY GLY ARG LEU GLY THR TYR SEQRES 29 C 399 GLN TYR LEU ASP MET HIS MET ALA ILE ALA SER ALA LEU SEQRES 30 C 399 ASN MET TYR ASP ASN VAL LEU ALA PRO HIS LEU ARG ASP SEQRES 31 C 399 GLY VAL PRO LEU LEU GLN ASP GLY ALA HET FAD B 401 53 HET 3UC B 402 38 HET FAD A 401 53 HET 3UC A 402 38 HET FAD C 401 53 HET 3UC C 402 38 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM 3UC [(2R,3S,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)- HETNAM 2 3UC YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL (2R,5S, HETNAM 3 3UC 6R)-3,3,4,4-TETRAFLUORO-5-HYDROXY-6-(HYDROXYMETHYL) HETNAM 4 3UC TETRAHYDRO-2H-PYRAN-2-YL DIHYDROGEN DIPHOSPHATE (NON- HETNAM 5 3UC PREFERRED NAME) FORMUL 4 FAD 3(C27 H33 N9 O15 P2) FORMUL 5 3UC 3(C15 H20 F4 N2 O15 P2) FORMUL 10 HOH *421(H2 O) HELIX 1 1 GLY B 16 LEU B 30 1 15 HELIX 2 2 GLY B 44 ALA B 47 5 4 HELIX 3 3 ASN B 71 ARG B 79 1 9 HELIX 4 4 GLY B 105 GLY B 114 1 10 HELIX 5 5 THR B 118 ALA B 130 1 13 HELIX 6 6 ASP B 134 ALA B 138 5 5 HELIX 7 7 ASN B 140 GLY B 150 1 11 HELIX 8 8 GLY B 150 VAL B 158 1 9 HELIX 9 9 VAL B 158 GLN B 167 1 10 HELIX 10 10 PRO B 174 ILE B 178 5 5 HELIX 11 11 GLY B 203 ALA B 212 1 10 HELIX 12 12 ASP B 224 SER B 236 1 13 HELIX 13 13 PRO B 246 PHE B 251 1 6 HELIX 14 14 ARG B 297 HIS B 300 5 4 HELIX 15 15 THR B 332 LYS B 354 1 23 HELIX 16 16 GLY B 358 TYR B 364 1 7 HELIX 17 17 ASP B 368 VAL B 383 1 16 HELIX 18 18 VAL B 383 GLY B 391 1 9 HELIX 19 19 GLY A 16 ASP A 31 1 16 HELIX 20 20 GLY A 44 ALA A 47 5 4 HELIX 21 21 ASN A 71 ARG A 79 1 9 HELIX 22 22 GLY A 105 PHE A 113 1 9 HELIX 23 23 THR A 118 ALA A 131 1 14 HELIX 24 24 ASN A 140 GLY A 150 1 11 HELIX 25 25 ARG A 151 GLN A 167 1 17 HELIX 26 26 ASN A 177 LEU A 181 5 5 HELIX 27 27 GLY A 203 ALA A 212 1 10 HELIX 28 28 ASP A 224 ARG A 233 1 10 HELIX 29 29 PRO A 246 PHE A 251 1 6 HELIX 30 30 ARG A 297 HIS A 300 5 4 HELIX 31 31 THR A 332 LYS A 354 1 23 HELIX 32 32 GLY A 358 TYR A 364 1 7 HELIX 33 33 ASP A 368 VAL A 383 1 16 HELIX 34 34 VAL A 383 GLY A 391 1 9 HELIX 35 35 GLY C 16 ASP C 31 1 16 HELIX 36 36 GLY C 44 ALA C 47 5 4 HELIX 37 37 ASN C 71 ARG C 79 1 9 HELIX 38 38 GLY C 105 PHE C 113 1 9 HELIX 39 39 THR C 118 ALA C 130 1 13 HELIX 40 40 ASP C 134 ALA C 138 5 5 HELIX 41 41 ASN C 140 GLY C 150 1 11 HELIX 42 42 GLY C 150 VAL C 158 1 9 HELIX 43 43 VAL C 158 GLN C 167 1 10 HELIX 44 44 ASP C 169 LEU C 173 5 5 HELIX 45 45 PRO C 174 ILE C 178 5 5 HELIX 46 46 GLY C 203 ALA C 212 1 10 HELIX 47 47 ASP C 224 ASP C 227 5 4 HELIX 48 48 VAL C 228 ARG C 233 1 6 HELIX 49 49 PRO C 234 SER C 236 5 3 HELIX 50 50 PRO C 246 PHE C 251 1 6 HELIX 51 51 ARG C 297 HIS C 300 5 4 HELIX 52 52 THR C 332 LYS C 354 1 23 HELIX 53 53 GLY C 358 TYR C 364 1 7 HELIX 54 54 ASP C 368 VAL C 383 1 16 HELIX 55 55 VAL C 383 GLY C 391 1 9 SHEET 1 A 5 ILE B 217 ARG B 220 0 SHEET 2 A 5 VAL B 34 LEU B 37 1 N VAL B 36 O GLU B 218 SHEET 3 A 5 LEU B 10 VAL B 13 1 N VAL B 12 O LEU B 37 SHEET 4 A 5 VAL B 241 TYR B 243 1 O VAL B 242 N VAL B 13 SHEET 5 A 5 VAL B 355 PHE B 357 1 O LEU B 356 N VAL B 241 SHEET 1 B 2 SER B 49 ALA B 51 0 SHEET 2 B 2 GLU B 58 HIS B 60 -1 O VAL B 59 N GLU B 50 SHEET 1 C 2 PHE B 67 THR B 69 0 SHEET 2 C 2 TYR B 196 GLY B 198 -1 O TYR B 196 N THR B 69 SHEET 1 D 7 GLN B 98 GLN B 101 0 SHEET 2 D 7 VAL B 91 HIS B 95 -1 N ALA B 93 O TYR B 100 SHEET 3 D 7 VAL B 280 TYR B 283 1 O ASN B 282 N MET B 94 SHEET 4 D 7 ARG B 292 GLU B 295 -1 O ILE B 293 N MET B 281 SHEET 5 D 7 THR B 310 PHE B 319 -1 O MET B 313 N HIS B 294 SHEET 6 D 7 TRP B 260 LEU B 270 -1 N THR B 262 O ARG B 318 SHEET 7 D 7 TYR B 328 PRO B 329 -1 O TYR B 328 N ARG B 261 SHEET 1 E 5 ILE A 217 ARG A 220 0 SHEET 2 E 5 VAL A 34 LEU A 37 1 N VAL A 36 O GLU A 218 SHEET 3 E 5 LEU A 10 VAL A 13 1 N VAL A 12 O LEU A 37 SHEET 4 E 5 VAL A 241 TYR A 243 1 O VAL A 242 N VAL A 13 SHEET 5 E 5 VAL A 355 PHE A 357 1 O LEU A 356 N VAL A 241 SHEET 1 F 2 SER A 49 ALA A 51 0 SHEET 2 F 2 GLU A 58 HIS A 60 -1 O VAL A 59 N GLU A 50 SHEET 1 G 2 PHE A 67 THR A 69 0 SHEET 2 G 2 TYR A 196 GLY A 198 -1 O TYR A 196 N THR A 69 SHEET 1 H 7 GLN A 98 PHE A 102 0 SHEET 2 H 7 VAL A 91 HIS A 95 -1 N ALA A 93 O TYR A 100 SHEET 3 H 7 VAL A 280 TYR A 283 1 O ASN A 282 N MET A 94 SHEET 4 H 7 ARG A 292 GLU A 295 -1 O ILE A 293 N MET A 281 SHEET 5 H 7 THR A 310 PHE A 319 -1 O MET A 313 N HIS A 294 SHEET 6 H 7 TRP A 260 LEU A 270 -1 N THR A 262 O ARG A 318 SHEET 7 H 7 TYR A 328 PRO A 329 -1 O TYR A 328 N ARG A 261 SHEET 1 I 5 ILE C 217 ARG C 220 0 SHEET 2 I 5 VAL C 34 LEU C 37 1 N VAL C 36 O GLU C 218 SHEET 3 I 5 LEU C 10 VAL C 13 1 N VAL C 12 O LEU C 37 SHEET 4 I 5 VAL C 241 TYR C 243 1 O VAL C 242 N VAL C 13 SHEET 5 I 5 VAL C 355 PHE C 357 1 O LEU C 356 N VAL C 241 SHEET 1 J 2 SER C 49 ALA C 51 0 SHEET 2 J 2 GLU C 58 HIS C 60 -1 O VAL C 59 N GLU C 50 SHEET 1 K 2 PHE C 67 THR C 69 0 SHEET 2 K 2 TYR C 196 GLY C 198 -1 O TYR C 196 N THR C 69 SHEET 1 L 7 GLN C 98 PHE C 102 0 SHEET 2 L 7 VAL C 91 HIS C 95 -1 N ALA C 93 O TYR C 100 SHEET 3 L 7 VAL C 280 TYR C 283 1 O ASN C 282 N PHE C 92 SHEET 4 L 7 ARG C 292 GLU C 295 -1 O ILE C 293 N MET C 281 SHEET 5 L 7 THR C 310 PHE C 319 -1 O MET C 313 N HIS C 294 SHEET 6 L 7 TRP C 260 LEU C 270 -1 N ASP C 264 O TYR C 316 SHEET 7 L 7 TYR C 328 PRO C 329 -1 O TYR C 328 N ARG C 261 CISPEP 1 PHE B 102 PRO B 103 0 0.96 CISPEP 2 PHE A 102 PRO A 103 0 1.18 CISPEP 3 PHE C 102 PRO C 103 0 0.60 SITE 1 AC1 33 VAL B 13 GLY B 14 GLY B 16 PHE B 17 SITE 2 AC1 33 PHE B 18 LEU B 37 GLU B 38 ARG B 39 SITE 3 AC1 33 ARG B 40 GLY B 45 ASN B 46 TYR B 62 SITE 4 AC1 33 ALA B 64 HIS B 65 LEU B 66 ASP B 224 SITE 5 AC1 33 TRP B 225 PHE B 226 THR B 244 GLY B 245 SITE 6 AC1 33 LEU B 263 TYR B 327 ARG B 360 LEU B 367 SITE 7 AC1 33 ASP B 368 MET B 369 ALA B 372 3UC B 402 SITE 8 AC1 33 HOH B 508 HOH B 509 HOH B 510 HOH B 630 SITE 9 AC1 33 HOH B 632 SITE 1 AC2 25 ALA B 64 LEU B 66 HIS B 89 VAL B 91 SITE 2 AC2 25 PHE B 102 PHE B 157 VAL B 158 TYR B 161 SITE 3 AC2 25 THR B 162 TRP B 166 ASN B 177 ARG B 180 SITE 4 AC2 25 LEU B 181 TYR B 191 PHE B 192 ASN B 282 SITE 5 AC2 25 ASN B 284 ARG B 292 TYR B 328 TYR B 366 SITE 6 AC2 25 FAD B 401 HOH B 596 HOH B 638 HOH B 641 SITE 7 AC2 25 HOH B 649 SITE 1 AC3 34 VAL A 13 GLY A 14 GLY A 16 PHE A 17 SITE 2 AC3 34 PHE A 18 LEU A 37 GLU A 38 ARG A 39 SITE 3 AC3 34 ARG A 40 GLY A 45 ASN A 46 TYR A 62 SITE 4 AC3 34 ALA A 64 HIS A 65 LEU A 66 ASP A 224 SITE 5 AC3 34 TRP A 225 PHE A 226 GLY A 245 PRO A 246 SITE 6 AC3 34 LEU A 263 TYR A 327 TYR A 328 GLY A 359 SITE 7 AC3 34 ARG A 360 LEU A 367 ASP A 368 MET A 369 SITE 8 AC3 34 ALA A 372 3UC A 402 HOH A 504 HOH A 508 SITE 9 AC3 34 HOH A 554 HOH A 629 SITE 1 AC4 26 ALA A 64 LEU A 66 HIS A 89 VAL A 91 SITE 2 AC4 26 PHE A 102 PHE A 157 VAL A 158 TYR A 161 SITE 3 AC4 26 THR A 162 TRP A 166 ASN A 177 ILE A 178 SITE 4 AC4 26 ARG A 180 LEU A 181 TYR A 191 PHE A 192 SITE 5 AC4 26 ASN A 282 ASN A 284 ARG A 292 TYR A 328 SITE 6 AC4 26 TYR A 366 FAD A 401 HOH A 547 HOH A 631 SITE 7 AC4 26 HOH A 634 HOH A 649 SITE 1 AC5 34 GLY C 14 GLY C 16 PHE C 17 PHE C 18 SITE 2 AC5 34 LEU C 37 GLU C 38 ARG C 39 ARG C 40 SITE 3 AC5 34 GLY C 45 ASN C 46 TYR C 62 ALA C 64 SITE 4 AC5 34 HIS C 65 LEU C 66 THR C 223 ASP C 224 SITE 5 AC5 34 TRP C 225 PHE C 226 THR C 244 GLY C 245 SITE 6 AC5 34 LEU C 263 TYR C 327 GLY C 359 ARG C 360 SITE 7 AC5 34 TYR C 366 LEU C 367 ASP C 368 MET C 369 SITE 8 AC5 34 3UC C 402 HOH C 517 HOH C 518 HOH C 567 SITE 9 AC5 34 HOH C 600 HOH C 608 SITE 1 AC6 25 ALA C 64 LEU C 66 HIS C 89 VAL C 91 SITE 2 AC6 25 PHE C 102 PHE C 157 TYR C 161 THR C 162 SITE 3 AC6 25 GLN C 165 ASN C 177 ILE C 178 ARG C 180 SITE 4 AC6 25 LEU C 181 TYR C 191 PHE C 192 ASN C 282 SITE 5 AC6 25 ASN C 284 ARG C 292 TYR C 328 TYR C 366 SITE 6 AC6 25 FAD C 401 HOH C 502 HOH C 604 HOH C 618 SITE 7 AC6 25 HOH C 619 CRYST1 171.290 98.290 100.520 90.00 109.94 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005838 0.000000 0.002118 0.00000 SCALE2 0.000000 0.010174 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010583 0.00000