HEADER TRANSCRIPTION 30-OCT-14 4RPN TITLE PCPR INDUCER BINDING DOMAIN COMPLEX WITH PENTACHLOROPHENOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: PCP DEGRADATION TRANSCRIPTIONAL ACTIVATION PROTEIN; COMPND 3 CHAIN: D, C, A, B; COMPND 4 FRAGMENT: RESIDUES 85-307; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOBIUM CHLOROPHENOLICUM; SOURCE 3 ORGANISM_TAXID: 46429; SOURCE 4 GENE: PCPR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LYSR FAMILY TRANSCRIPTIONAL REGULATOR, INDUCER BINDING DOMAIN, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR R.P.HAYES,T.W.MOURAL,K.M.LEWIS,D.ONOFREI,L.XUN,C.KANG REVDAT 2 20-SEP-23 4RPN 1 REMARK REVDAT 1 26-NOV-14 4RPN 0 JRNL AUTH R.P.HAYES,T.W.MOURAL,K.M.LEWIS,D.ONOFREI,L.XUN,C.KANG JRNL TITL STRUCTURES OF THE INDUCER-BINDING DOMAIN OF JRNL TITL 2 PENTACHLOROPHENOL-DEGRADING GENE REGULATOR PCPR FROM JRNL TITL 3 SPHINGOBIUM CHLOROPHENOLICUM. JRNL REF INT J MOL SCI V. 15 20736 2014 JRNL REFN ESSN 1422-0067 JRNL PMID 25397598 JRNL DOI 10.3390/IJMS151120736 REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 53635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.780 REMARK 3 FREE R VALUE TEST SET COUNT : 2026 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.4676 - 5.4744 1.00 3715 134 0.1580 0.1827 REMARK 3 2 5.4744 - 4.3460 1.00 3723 139 0.1455 0.1673 REMARK 3 3 4.3460 - 3.7969 1.00 3747 148 0.1609 0.1952 REMARK 3 4 3.7969 - 3.4498 1.00 3682 163 0.1782 0.2233 REMARK 3 5 3.4498 - 3.2026 1.00 3713 143 0.1896 0.2298 REMARK 3 6 3.2026 - 3.0138 1.00 3717 152 0.1967 0.2636 REMARK 3 7 3.0138 - 2.8629 1.00 3735 151 0.1915 0.2366 REMARK 3 8 2.8629 - 2.7383 1.00 3717 138 0.2033 0.2533 REMARK 3 9 2.7383 - 2.6329 1.00 3707 159 0.2010 0.2343 REMARK 3 10 2.6329 - 2.5420 1.00 3722 138 0.2011 0.2223 REMARK 3 11 2.5420 - 2.4625 1.00 3706 155 0.1897 0.2102 REMARK 3 12 2.4625 - 2.3922 1.00 3723 138 0.2074 0.2637 REMARK 3 13 2.3922 - 2.3292 0.98 3679 132 0.2045 0.2779 REMARK 3 14 2.3292 - 2.2720 0.90 3323 136 0.2170 0.2798 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7271 REMARK 3 ANGLE : 1.018 9910 REMARK 3 CHIRALITY : 0.046 1089 REMARK 3 PLANARITY : 0.005 1290 REMARK 3 DIHEDRAL : 14.295 2650 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RPN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000087640. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : KOHZU REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53656 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4RNS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM MALONATE PH 5.0, 12% W/V REMARK 280 POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 84.52400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 48.79995 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.75467 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 84.52400 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 48.79995 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.75467 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 84.52400 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 48.79995 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.75467 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 97.59991 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 73.50933 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 97.59991 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 73.50933 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 97.59991 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 73.50933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -122.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -123.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG D 85 REMARK 465 SER D 86 REMARK 465 GLU D 87 REMARK 465 LEU D 88 REMARK 465 GLU D 307 REMARK 465 ARG C 85 REMARK 465 SER C 86 REMARK 465 GLU C 87 REMARK 465 LEU C 88 REMARK 465 ARG C 89 REMARK 465 GLU C 307 REMARK 465 ARG A 85 REMARK 465 SER A 86 REMARK 465 GLU A 87 REMARK 465 LEU A 88 REMARK 465 ARG B 85 REMARK 465 SER B 86 REMARK 465 GLU B 87 REMARK 465 LEU B 88 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 538 O HOH C 557 1.81 REMARK 500 O HOH A 563 O HOH A 583 1.90 REMARK 500 O HOH B 518 O HOH B 534 1.94 REMARK 500 NH1 ARG C 258 O HOH C 551 1.95 REMARK 500 OE2 GLU D 189 O HOH D 594 1.96 REMARK 500 O1 PCI A 401 O HOH A 502 2.03 REMARK 500 O HOH B 583 O HOH B 594 2.03 REMARK 500 O HOH C 559 O HOH C 565 2.04 REMARK 500 O GLY B 300 O HOH B 507 2.05 REMARK 500 O HOH D 544 O HOH D 590 2.06 REMARK 500 OE2 GLU A 209 O HOH A 536 2.08 REMARK 500 O GLY C 136 O HOH C 548 2.10 REMARK 500 O HOH A 570 O HOH A 573 2.12 REMARK 500 OG1 THR A 163 O HOH A 535 2.12 REMARK 500 OG1 THR A 156 O HOH A 558 2.13 REMARK 500 NE ARG B 225 O HOH B 579 2.13 REMARK 500 OE1 GLU D 189 O HOH D 594 2.14 REMARK 500 OD1 ASP B 286 O HOH B 581 2.14 REMARK 500 OE2 GLU A 120 NH1 ARG B 225 2.14 REMARK 500 OE1 GLU C 269 O HOH C 553 2.15 REMARK 500 NH2 ARG A 225 OE2 GLU B 120 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH D 566 O HOH D 571 8654 1.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA D 123 61.44 -160.19 REMARK 500 SER D 158 -70.14 -148.80 REMARK 500 LEU D 182 41.07 -86.82 REMARK 500 THR D 183 -56.26 -136.38 REMARK 500 LEU D 186 77.93 -101.22 REMARK 500 ALA D 201 -14.59 -140.31 REMARK 500 ALA C 123 61.94 -153.90 REMARK 500 SER C 158 -60.72 -178.36 REMARK 500 ALA C 159 103.78 -49.96 REMARK 500 PHE C 167 -177.25 -173.39 REMARK 500 PRO C 267 33.94 -78.20 REMARK 500 GLN C 302 10.18 -143.79 REMARK 500 SER A 158 -68.74 -148.36 REMARK 500 LEU A 186 58.59 -112.93 REMARK 500 PRO A 267 45.54 -81.85 REMARK 500 ALA B 123 56.37 -155.17 REMARK 500 SER B 158 -67.14 -171.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PCI D 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PCI D 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PCI C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PCI C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PCI A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PCI A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PCI B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PCI B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RNS RELATED DB: PDB REMARK 900 PCPR INDUCER BINDING DOMAIN (APO-FORM) DBREF 4RPN D 85 307 UNP P52679 PCPR_SPHCR 85 307 DBREF 4RPN C 85 307 UNP P52679 PCPR_SPHCR 85 307 DBREF 4RPN A 85 307 UNP P52679 PCPR_SPHCR 85 307 DBREF 4RPN B 85 307 UNP P52679 PCPR_SPHCR 85 307 SEQRES 1 D 223 ARG SER GLU LEU ARG PHE ASP PRO GLY THR SER ASN ARG SEQRES 2 D 223 ASN PHE ARG ILE ALA ALA SER ASP PHE GLY GLN ALA LEU SEQRES 3 D 223 MET LEU PRO ARG LEU TYR ALA THR LEU GLU GLU THR ALA SEQRES 4 D 223 PRO GLN VAL ARG VAL THR GLY VAL ASN LEU ARG HIS GLY SEQRES 5 D 223 PRO LEU VAL GLU GLU LEU GLU SER GLY SER ILE ASP ILE SEQRES 6 D 223 ALA PHE GLY GLY PHE PRO THR LEU SER ALA GLY ILE LYS SEQRES 7 D 223 THR GLN THR LEU PHE ARG GLU GLU TYR VAL CYS VAL MET SEQRES 8 D 223 ARG GLN SER HIS PRO ALA LEU THR HIS GLY LEU ASP LEU SEQRES 9 D 223 GLU ALA PHE ARG GLN CYS ARG HIS ILE ILE VAL THR ALA SEQRES 10 D 223 HIS GLU PHE ASN HIS VAL HIS GLU GLN VAL GLU ALA ARG SEQRES 11 D 223 LEU LEU GLU LEU LEU PRO PRO GLU SER ILE ARG PHE THR SEQRES 12 D 223 THR GLU ASN PHE LEU VAL SER ALA VAL ILE ALA GLU GLU SEQRES 13 D 223 THR ASP VAL ILE LEU THR ILE PRO SER ARG LEU ALA ARG SEQRES 14 D 223 TRP PHE ALA ASN ARG GLY GLY LEU THR ILE PHE PRO VAL SEQRES 15 D 223 PRO ILE GLU LEU PRO SER ILE GLU VAL LYS GLN TYR TRP SEQRES 16 D 223 HIS GLU ARG TYR ASP LYS ASP PRO GLY ASN ILE TRP LEU SEQRES 17 D 223 ARG ARG VAL ILE ALA LYS ILE GLY PHE GLN ASN PRO PRO SEQRES 18 D 223 ALA GLU SEQRES 1 C 223 ARG SER GLU LEU ARG PHE ASP PRO GLY THR SER ASN ARG SEQRES 2 C 223 ASN PHE ARG ILE ALA ALA SER ASP PHE GLY GLN ALA LEU SEQRES 3 C 223 MET LEU PRO ARG LEU TYR ALA THR LEU GLU GLU THR ALA SEQRES 4 C 223 PRO GLN VAL ARG VAL THR GLY VAL ASN LEU ARG HIS GLY SEQRES 5 C 223 PRO LEU VAL GLU GLU LEU GLU SER GLY SER ILE ASP ILE SEQRES 6 C 223 ALA PHE GLY GLY PHE PRO THR LEU SER ALA GLY ILE LYS SEQRES 7 C 223 THR GLN THR LEU PHE ARG GLU GLU TYR VAL CYS VAL MET SEQRES 8 C 223 ARG GLN SER HIS PRO ALA LEU THR HIS GLY LEU ASP LEU SEQRES 9 C 223 GLU ALA PHE ARG GLN CYS ARG HIS ILE ILE VAL THR ALA SEQRES 10 C 223 HIS GLU PHE ASN HIS VAL HIS GLU GLN VAL GLU ALA ARG SEQRES 11 C 223 LEU LEU GLU LEU LEU PRO PRO GLU SER ILE ARG PHE THR SEQRES 12 C 223 THR GLU ASN PHE LEU VAL SER ALA VAL ILE ALA GLU GLU SEQRES 13 C 223 THR ASP VAL ILE LEU THR ILE PRO SER ARG LEU ALA ARG SEQRES 14 C 223 TRP PHE ALA ASN ARG GLY GLY LEU THR ILE PHE PRO VAL SEQRES 15 C 223 PRO ILE GLU LEU PRO SER ILE GLU VAL LYS GLN TYR TRP SEQRES 16 C 223 HIS GLU ARG TYR ASP LYS ASP PRO GLY ASN ILE TRP LEU SEQRES 17 C 223 ARG ARG VAL ILE ALA LYS ILE GLY PHE GLN ASN PRO PRO SEQRES 18 C 223 ALA GLU SEQRES 1 A 223 ARG SER GLU LEU ARG PHE ASP PRO GLY THR SER ASN ARG SEQRES 2 A 223 ASN PHE ARG ILE ALA ALA SER ASP PHE GLY GLN ALA LEU SEQRES 3 A 223 MET LEU PRO ARG LEU TYR ALA THR LEU GLU GLU THR ALA SEQRES 4 A 223 PRO GLN VAL ARG VAL THR GLY VAL ASN LEU ARG HIS GLY SEQRES 5 A 223 PRO LEU VAL GLU GLU LEU GLU SER GLY SER ILE ASP ILE SEQRES 6 A 223 ALA PHE GLY GLY PHE PRO THR LEU SER ALA GLY ILE LYS SEQRES 7 A 223 THR GLN THR LEU PHE ARG GLU GLU TYR VAL CYS VAL MET SEQRES 8 A 223 ARG GLN SER HIS PRO ALA LEU THR HIS GLY LEU ASP LEU SEQRES 9 A 223 GLU ALA PHE ARG GLN CYS ARG HIS ILE ILE VAL THR ALA SEQRES 10 A 223 HIS GLU PHE ASN HIS VAL HIS GLU GLN VAL GLU ALA ARG SEQRES 11 A 223 LEU LEU GLU LEU LEU PRO PRO GLU SER ILE ARG PHE THR SEQRES 12 A 223 THR GLU ASN PHE LEU VAL SER ALA VAL ILE ALA GLU GLU SEQRES 13 A 223 THR ASP VAL ILE LEU THR ILE PRO SER ARG LEU ALA ARG SEQRES 14 A 223 TRP PHE ALA ASN ARG GLY GLY LEU THR ILE PHE PRO VAL SEQRES 15 A 223 PRO ILE GLU LEU PRO SER ILE GLU VAL LYS GLN TYR TRP SEQRES 16 A 223 HIS GLU ARG TYR ASP LYS ASP PRO GLY ASN ILE TRP LEU SEQRES 17 A 223 ARG ARG VAL ILE ALA LYS ILE GLY PHE GLN ASN PRO PRO SEQRES 18 A 223 ALA GLU SEQRES 1 B 223 ARG SER GLU LEU ARG PHE ASP PRO GLY THR SER ASN ARG SEQRES 2 B 223 ASN PHE ARG ILE ALA ALA SER ASP PHE GLY GLN ALA LEU SEQRES 3 B 223 MET LEU PRO ARG LEU TYR ALA THR LEU GLU GLU THR ALA SEQRES 4 B 223 PRO GLN VAL ARG VAL THR GLY VAL ASN LEU ARG HIS GLY SEQRES 5 B 223 PRO LEU VAL GLU GLU LEU GLU SER GLY SER ILE ASP ILE SEQRES 6 B 223 ALA PHE GLY GLY PHE PRO THR LEU SER ALA GLY ILE LYS SEQRES 7 B 223 THR GLN THR LEU PHE ARG GLU GLU TYR VAL CYS VAL MET SEQRES 8 B 223 ARG GLN SER HIS PRO ALA LEU THR HIS GLY LEU ASP LEU SEQRES 9 B 223 GLU ALA PHE ARG GLN CYS ARG HIS ILE ILE VAL THR ALA SEQRES 10 B 223 HIS GLU PHE ASN HIS VAL HIS GLU GLN VAL GLU ALA ARG SEQRES 11 B 223 LEU LEU GLU LEU LEU PRO PRO GLU SER ILE ARG PHE THR SEQRES 12 B 223 THR GLU ASN PHE LEU VAL SER ALA VAL ILE ALA GLU GLU SEQRES 13 B 223 THR ASP VAL ILE LEU THR ILE PRO SER ARG LEU ALA ARG SEQRES 14 B 223 TRP PHE ALA ASN ARG GLY GLY LEU THR ILE PHE PRO VAL SEQRES 15 B 223 PRO ILE GLU LEU PRO SER ILE GLU VAL LYS GLN TYR TRP SEQRES 16 B 223 HIS GLU ARG TYR ASP LYS ASP PRO GLY ASN ILE TRP LEU SEQRES 17 B 223 ARG ARG VAL ILE ALA LYS ILE GLY PHE GLN ASN PRO PRO SEQRES 18 B 223 ALA GLU HET PCI D 401 12 HET PCI D 402 12 HET PCI C 401 12 HET PCI C 402 12 HET PCI A 401 12 HET PCI A 402 12 HET PCI B 401 12 HET PCI B 402 12 HETNAM PCI PENTACHLOROPHENOL FORMUL 5 PCI 8(C6 H CL5 O) FORMUL 13 HOH *343(H2 O) HELIX 1 1 SER D 104 ALA D 123 1 20 HELIX 2 2 PRO D 137 SER D 144 1 8 HELIX 3 3 ASP D 187 CYS D 194 1 8 HELIX 4 4 ALA D 201 ASN D 205 5 5 HELIX 5 5 HIS D 206 VAL D 207 5 2 HELIX 6 6 HIS D 208 LEU D 219 1 12 HELIX 7 7 PRO D 220 GLU D 222 5 3 HELIX 8 8 ASN D 230 THR D 241 1 12 HELIX 9 9 SER D 249 ASN D 257 1 9 HELIX 10 10 ARG D 282 ASP D 284 5 3 HELIX 11 11 ASP D 286 ILE D 299 1 14 HELIX 12 12 SER C 104 LEU C 112 1 9 HELIX 13 13 LEU C 115 ALA C 123 1 9 HELIX 14 14 LEU C 138 SER C 144 1 7 HELIX 15 15 HIS C 179 THR C 183 5 5 HELIX 16 16 ASP C 187 CYS C 194 1 8 HELIX 17 17 VAL C 207 LEU C 219 1 13 HELIX 18 18 PRO C 220 GLU C 222 5 3 HELIX 19 19 ASN C 230 THR C 241 1 12 HELIX 20 20 SER C 249 ASN C 257 1 9 HELIX 21 21 ARG C 282 ASP C 284 5 3 HELIX 22 22 ASP C 286 LYS C 298 1 13 HELIX 23 23 SER A 104 ALA A 123 1 20 HELIX 24 24 PRO A 137 SER A 144 1 8 HELIX 25 25 HIS A 179 THR A 183 5 5 HELIX 26 26 ASP A 187 CYS A 194 1 8 HELIX 27 27 ALA A 201 HIS A 206 5 6 HELIX 28 28 VAL A 207 LEU A 219 1 13 HELIX 29 29 PRO A 220 GLU A 222 5 3 HELIX 30 30 ASN A 230 THR A 241 1 12 HELIX 31 31 SER A 249 ASN A 257 1 9 HELIX 32 32 ARG A 282 ASP A 284 5 3 HELIX 33 33 ASP A 286 ILE A 299 1 14 HELIX 34 34 SER B 104 ALA B 123 1 20 HELIX 35 35 PRO B 137 SER B 144 1 8 HELIX 36 36 HIS B 179 THR B 183 5 5 HELIX 37 37 ASP B 187 CYS B 194 1 8 HELIX 38 38 ALA B 201 HIS B 206 5 6 HELIX 39 39 VAL B 207 LEU B 219 1 13 HELIX 40 40 PRO B 220 GLU B 222 5 3 HELIX 41 41 ASN B 230 THR B 241 1 12 HELIX 42 42 SER B 249 ASN B 257 1 9 HELIX 43 43 ARG B 282 ASP B 284 5 3 HELIX 44 44 ASP B 286 LYS B 298 1 13 SHEET 1 A 7 ILE D 161 GLU D 169 0 SHEET 2 A 7 ILE D 273 HIS D 280 -1 O VAL D 275 N PHE D 167 SHEET 3 A 7 ILE D 149 GLY D 152 -1 N ALA D 150 O TYR D 278 SHEET 4 A 7 ASN D 98 ALA D 102 1 N ALA D 102 O PHE D 151 SHEET 5 A 7 ARG D 127 VAL D 131 1 O ARG D 127 N PHE D 99 SHEET 6 A 7 ILE C 224 THR C 228 1 O THR C 227 N GLY D 130 SHEET 7 A 7 HIS C 196 VAL C 199 1 N ILE C 198 O PHE C 226 SHEET 1 B 3 LEU D 245 PRO D 248 0 SHEET 2 B 3 TYR D 171 ARG D 176 -1 N VAL D 172 O ILE D 247 SHEET 3 B 3 LEU D 261 PHE D 264 -1 O THR D 262 N MET D 175 SHEET 1 C 7 HIS D 196 VAL D 199 0 SHEET 2 C 7 ILE D 224 THR D 228 1 O PHE D 226 N ILE D 198 SHEET 3 C 7 ARG C 127 VAL C 131 1 O GLY C 130 N THR D 227 SHEET 4 C 7 ASN C 98 ALA C 102 1 N ILE C 101 O VAL C 131 SHEET 5 C 7 ILE C 149 GLY C 152 1 O ILE C 149 N ALA C 102 SHEET 6 C 7 ILE C 273 HIS C 280 -1 O LYS C 276 N GLY C 152 SHEET 7 C 7 ILE C 161 GLU C 169 -1 N PHE C 167 O VAL C 275 SHEET 1 D 3 LEU C 245 PRO C 248 0 SHEET 2 D 3 TYR C 171 ARG C 176 -1 N VAL C 172 O ILE C 247 SHEET 3 D 3 LEU C 261 PHE C 264 -1 O PHE C 264 N CYS C 173 SHEET 1 E 7 ILE A 161 GLU A 169 0 SHEET 2 E 7 ILE A 273 HIS A 280 -1 O VAL A 275 N PHE A 167 SHEET 3 E 7 ILE A 149 GLY A 152 -1 N ALA A 150 O TYR A 278 SHEET 4 E 7 ASN A 98 ALA A 102 1 N ALA A 102 O PHE A 151 SHEET 5 E 7 ARG A 127 VAL A 131 1 O THR A 129 N ILE A 101 SHEET 6 E 7 ILE B 224 THR B 228 1 O THR B 227 N GLY A 130 SHEET 7 E 7 HIS B 196 VAL B 199 1 N ILE B 198 O PHE B 226 SHEET 1 F10 LEU A 261 PHE A 264 0 SHEET 2 F10 TYR A 171 ARG A 176 -1 N CYS A 173 O PHE A 264 SHEET 3 F10 VAL A 243 PRO A 248 -1 O ILE A 247 N VAL A 172 SHEET 4 F10 ARG A 195 VAL A 199 1 N ARG A 195 O ILE A 244 SHEET 5 F10 ILE A 224 THR A 228 1 O PHE A 226 N ILE A 198 SHEET 6 F10 ARG B 127 VAL B 131 1 O GLY B 130 N THR A 227 SHEET 7 F10 ASN B 98 ALA B 102 1 N PHE B 99 O THR B 129 SHEET 8 F10 ILE B 149 GLY B 152 1 O PHE B 151 N ALA B 102 SHEET 9 F10 ILE B 273 HIS B 280 -1 O LYS B 276 N GLY B 152 SHEET 10 F10 ILE B 161 GLU B 169 -1 N GLU B 169 O ILE B 273 SHEET 1 G 3 LEU B 245 PRO B 248 0 SHEET 2 G 3 TYR B 171 ARG B 176 -1 N VAL B 172 O ILE B 247 SHEET 3 G 3 LEU B 261 PHE B 264 -1 O THR B 262 N MET B 175 SITE 1 AC1 12 SER D 104 PHE D 106 GLY D 107 PHE D 151 SITE 2 AC1 12 PHE D 167 GLU D 169 TYR D 171 HIS D 206 SITE 3 AC1 12 PHE D 231 PRO D 248 VAL D 275 HOH D 584 SITE 1 AC2 10 VAL C 236 GLU C 240 ALA D 109 LEU D 110 SITE 2 AC2 10 ARG D 114 ARG D 250 LEU D 251 TRP D 254 SITE 3 AC2 10 HOH D 526 HOH D 572 SITE 1 AC3 10 SER C 104 PHE C 106 GLY C 107 GLU C 169 SITE 2 AC3 10 TYR C 171 HIS C 206 PHE C 231 PRO C 248 SITE 3 AC3 10 VAL C 275 HOH C 517 SITE 1 AC4 7 ALA C 109 LEU C 110 ARG C 114 ARG C 250 SITE 2 AC4 7 LEU C 251 TRP C 254 VAL D 236 SITE 1 AC5 11 SER A 104 PHE A 106 GLY A 107 GLU A 169 SITE 2 AC5 11 TYR A 171 HIS A 206 VAL A 207 PHE A 231 SITE 3 AC5 11 PRO A 248 VAL A 275 HOH A 502 SITE 1 AC6 10 ALA A 109 LEU A 110 ARG A 114 ARG A 250 SITE 2 AC6 10 LEU A 251 TRP A 254 PRO A 305 HOH A 514 SITE 3 AC6 10 VAL B 236 GLU B 240 SITE 1 AC7 11 SER B 104 PHE B 106 GLY B 107 GLU B 169 SITE 2 AC7 11 TYR B 171 HIS B 206 PHE B 231 PRO B 248 SITE 3 AC7 11 VAL B 275 HOH B 508 HOH B 540 SITE 1 AC8 9 VAL A 236 GLU A 240 ALA B 109 LEU B 110 SITE 2 AC8 9 ARG B 114 ARG B 250 LEU B 251 TRP B 254 SITE 3 AC8 9 HOH B 533 CRYST1 169.048 169.048 110.264 90.00 90.00 120.00 H 3 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005915 0.003415 0.000000 0.00000 SCALE2 0.000000 0.006831 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009069 0.00000