HEADER OXIDOREDUCTASE 05-NOV-14 4RQU TITLE ALCOHOL DEHYDROGENASE CRYSTAL STRUCTURE IN COMPLEX WITH NAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALCOHOL DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS, THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: ADH, ADH1, ARABIDOPSIS THALIANA, AT1G77120, F22K20.19; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS ROSSMANN FOLD, ALCOHOL DEHYDROGENASE, NAD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.W.XU REVDAT 2 20-NOV-24 4RQU 1 REMARK SEQADV LINK REVDAT 1 17-DEC-14 4RQU 0 JRNL AUTH F.CHEN,P.WANG,Y.AN,J.HUANG,Y.XU JRNL TITL STRUCTURAL INSIGHT INTO THE CONFORMATIONAL CHANGE OF ALCOHOL JRNL TITL 2 DEHYDROGENASE FROM ARABIDOPSIS THALIANAL DURING COENZYME JRNL TITL 3 BINDING. JRNL REF BIOCHIMIE V.108C 33 2014 JRNL REFN ISSN 0300-9084 JRNL PMID 25447145 JRNL DOI 10.1016/J.BIOCHI.2014.10.023 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 33347 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.280 REMARK 3 FREE R VALUE TEST SET COUNT : 2429 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3795 - 6.4247 0.91 1993 172 0.1545 0.1677 REMARK 3 2 6.4247 - 5.1013 0.90 1882 142 0.1422 0.1738 REMARK 3 3 5.1013 - 4.4570 0.93 1916 122 0.1355 0.1552 REMARK 3 4 4.4570 - 4.0497 0.92 1877 142 0.1516 0.1790 REMARK 3 5 4.0497 - 3.7596 0.92 1880 150 0.1688 0.2008 REMARK 3 6 3.7596 - 3.5380 0.92 1868 148 0.1682 0.1688 REMARK 3 7 3.5380 - 3.3608 0.93 1890 134 0.1803 0.2127 REMARK 3 8 3.3608 - 3.2146 0.92 1882 146 0.1864 0.2243 REMARK 3 9 3.2146 - 3.0908 0.93 1853 139 0.2023 0.2501 REMARK 3 10 3.0908 - 2.9842 0.92 1848 150 0.2103 0.2121 REMARK 3 11 2.9842 - 2.8909 0.93 1862 146 0.2096 0.2420 REMARK 3 12 2.8909 - 2.8083 0.93 1849 141 0.2204 0.2560 REMARK 3 13 2.8083 - 2.7343 0.91 1824 154 0.2316 0.2725 REMARK 3 14 2.7343 - 2.6676 0.91 1831 152 0.2384 0.2642 REMARK 3 15 2.6676 - 2.6070 0.84 1695 130 0.2406 0.2759 REMARK 3 16 2.6070 - 2.5515 0.75 1494 119 0.2414 0.2704 REMARK 3 17 2.5515 - 2.5005 0.75 1500 101 0.2417 0.2631 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.022 5912 REMARK 3 ANGLE : 2.285 7983 REMARK 3 CHIRALITY : 0.136 884 REMARK 3 PLANARITY : 0.018 1039 REMARK 3 DIHEDRAL : 16.014 2158 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RQU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000087683. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33370 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 0.29800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% (W/V) PEG-3350, 0.1M ACETATE PH REMARK 280 4.8, EVAPORATION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.21333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 110.42667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 110.42667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 55.21333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 6 HH22 ARG A 38 1.38 REMARK 500 HE2 HIS A 104 OD2 ASP B 287 1.39 REMARK 500 HE21 GLN B 280 O HOH B 532 1.40 REMARK 500 OD1 ASN A 245 H LYS A 247 1.52 REMARK 500 O THR A 146 HG1 THR A 153 1.52 REMARK 500 O GLN B 6 HH22 ARG B 38 1.52 REMARK 500 HE ARG A 65 O HIS A 142 1.54 REMARK 500 O PHE B 311 H GLU B 314 1.54 REMARK 500 H GLY B 288 O ASN B 313 1.54 REMARK 500 O MET B 112 HH21 ARG B 117 1.54 REMARK 500 OD2 ASP A 301 HE2 HIS B 307 1.55 REMARK 500 HD21 ASN B 136 O HOH B 510 1.56 REMARK 500 O PHE B 43 H GLY B 72 1.58 REMARK 500 O GLY B 123 H HIS B 142 1.58 REMARK 500 O LYS A 251 O HOH A 512 1.89 REMARK 500 O ASN A 228 O HOH A 523 1.89 REMARK 500 OD1 ASP A 226 O HOH A 523 1.90 REMARK 500 NE2 GLN B 280 O HOH B 532 1.92 REMARK 500 O HOH B 514 O HOH B 515 1.94 REMARK 500 O ASN B 119 O HOH B 517 1.96 REMARK 500 O GLU B 342 O HOH B 516 2.02 REMARK 500 NE2 GLN B 59 OE2 GLU B 121 2.02 REMARK 500 ND1 HIS A 249 O HOH A 533 2.02 REMARK 500 OE2 GLU B 283 OG1 THR B 306 2.06 REMARK 500 N THR B 320 O HOH B 533 2.08 REMARK 500 O ILE B 349 O HOH B 508 2.10 REMARK 500 NE2 GLN B 255 OE2 GLU B 259 2.11 REMARK 500 OD2 ASP B 84 O HOH B 535 2.11 REMARK 500 O GLN B 6 NH2 ARG B 38 2.12 REMARK 500 OG SER B 229 ND2 ASN B 245 2.12 REMARK 500 OG SER B 356 O ALA B 379 2.15 REMARK 500 O ASN A 245 O HOH A 533 2.18 REMARK 500 O VAL A 154 O HOH A 508 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O SER A 220 OH TYR B 141 6554 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE B 321 CB PHE B 321 CG -0.139 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 58 N - CA - C ANGL. DEV. = 16.0 DEGREES REMARK 500 PRO A 61 C - N - CA ANGL. DEV. = -9.1 DEGREES REMARK 500 ILE A 66 CG1 - CB - CG2 ANGL. DEV. = -14.9 DEGREES REMARK 500 ASP A 114 CB - CG - OD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ILE A 174 CG1 - CB - CG2 ANGL. DEV. = -16.3 DEGREES REMARK 500 LEU A 187 CB - CG - CD2 ANGL. DEV. = 10.4 DEGREES REMARK 500 LEU A 345 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 LEU B 85 CB - CG - CD2 ANGL. DEV. = -14.3 DEGREES REMARK 500 PHE B 201 CB - CG - CD2 ANGL. DEV. = 5.2 DEGREES REMARK 500 PHE B 201 CB - CG - CD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG B 215 CD - NE - CZ ANGL. DEV. = 9.6 DEGREES REMARK 500 ARG B 215 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ILE B 253 CG1 - CB - CG2 ANGL. DEV. = -16.3 DEGREES REMARK 500 VAL B 295 CG1 - CB - CG2 ANGL. DEV. = -10.2 DEGREES REMARK 500 LYS B 300 CD - CE - NZ ANGL. DEV. = 16.9 DEGREES REMARK 500 PRO B 308 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 6 -162.71 -127.17 REMARK 500 GLN A 59 -87.23 -62.00 REMARK 500 HIS A 69 -2.18 -140.58 REMARK 500 MET A 112 74.99 -100.48 REMARK 500 SER A 147 71.90 36.88 REMARK 500 CYS A 177 -89.24 -144.98 REMARK 500 GLU A 314 49.02 73.45 REMARK 500 ILE A 371 -70.95 -96.17 REMARK 500 GLN B 6 -162.37 -128.45 REMARK 500 HIS B 69 -2.24 -140.61 REMARK 500 SER B 147 72.80 35.94 REMARK 500 CYS B 177 -87.08 -146.43 REMARK 500 ASP B 262 46.53 21.02 REMARK 500 THR B 306 154.30 133.85 REMARK 500 GLU B 314 44.53 71.24 REMARK 500 ILE B 371 -70.28 -97.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 55 0.07 SIDE CHAIN REMARK 500 GLN B 33 0.08 SIDE CHAIN REMARK 500 ASN B 164 0.07 SIDE CHAIN REMARK 500 GLU B 357 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 CYS B 271 10.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 47 SG REMARK 620 2 HIS A 69 NE2 121.7 REMARK 620 3 CYS A 177 SG 144.6 89.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 99 SG REMARK 620 2 CYS A 102 SG 110.3 REMARK 620 3 CYS A 105 SG 114.8 109.6 REMARK 620 4 CYS A 113 SG 91.2 107.8 121.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 47 SG REMARK 620 2 HIS B 69 NE2 113.6 REMARK 620 3 CYS B 177 SG 123.9 81.7 REMARK 620 4 HOH B 506 O 116.1 111.6 105.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 99 SG REMARK 620 2 CYS B 102 SG 121.7 REMARK 620 3 CYS B 105 SG 108.7 101.4 REMARK 620 4 CYS B 113 SG 96.2 125.6 101.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RQT RELATED DB: PDB DBREF 4RQU A 6 379 UNP P06525 ADH1_ARATH 6 379 DBREF 4RQU B 6 379 UNP P06525 ADH1_ARATH 6 379 SEQADV 4RQU SER A 5 UNP P06525 EXPRESSION TAG SEQADV 4RQU SER B 5 UNP P06525 EXPRESSION TAG SEQRES 1 A 375 SER GLN ILE ILE ARG CYS LYS ALA ALA VAL ALA TRP GLU SEQRES 2 A 375 ALA GLY LYS PRO LEU VAL ILE GLU GLU VAL GLU VAL ALA SEQRES 3 A 375 PRO PRO GLN LYS HIS GLU VAL ARG ILE LYS ILE LEU PHE SEQRES 4 A 375 THR SER LEU CYS HIS THR ASP VAL TYR PHE TRP GLU ALA SEQRES 5 A 375 LYS GLY GLN THR PRO LEU PHE PRO ARG ILE PHE GLY HIS SEQRES 6 A 375 GLU ALA GLY GLY ILE VAL GLU SER VAL GLY GLU GLY VAL SEQRES 7 A 375 THR ASP LEU GLN PRO GLY ASP HIS VAL LEU PRO ILE PHE SEQRES 8 A 375 THR GLY GLU CYS GLY GLU CYS ARG HIS CYS HIS SER GLU SEQRES 9 A 375 GLU SER ASN MET CYS ASP LEU LEU ARG ILE ASN THR GLU SEQRES 10 A 375 ARG GLY GLY MET ILE HIS ASP GLY GLU SER ARG PHE SER SEQRES 11 A 375 ILE ASN GLY LYS PRO ILE TYR HIS PHE LEU GLY THR SER SEQRES 12 A 375 THR PHE SER GLU TYR THR VAL VAL HIS SER GLY GLN VAL SEQRES 13 A 375 ALA LYS ILE ASN PRO ASP ALA PRO LEU ASP LYS VAL CYS SEQRES 14 A 375 ILE VAL SER CYS GLY LEU SER THR GLY LEU GLY ALA THR SEQRES 15 A 375 LEU ASN VAL ALA LYS PRO LYS LYS GLY GLN SER VAL ALA SEQRES 16 A 375 ILE PHE GLY LEU GLY ALA VAL GLY LEU GLY ALA ALA GLU SEQRES 17 A 375 GLY ALA ARG ILE ALA GLY ALA SER ARG ILE ILE GLY VAL SEQRES 18 A 375 ASP PHE ASN SER LYS ARG PHE ASP GLN ALA LYS GLU PHE SEQRES 19 A 375 GLY VAL THR GLU CYS VAL ASN PRO LYS ASP HIS ASP LYS SEQRES 20 A 375 PRO ILE GLN GLN VAL ILE ALA GLU MET THR ASP GLY GLY SEQRES 21 A 375 VAL ASP ARG SER VAL GLU CYS THR GLY SER VAL GLN ALA SEQRES 22 A 375 MET ILE GLN ALA PHE GLU CYS VAL HIS ASP GLY TRP GLY SEQRES 23 A 375 VAL ALA VAL LEU VAL GLY VAL PRO SER LYS ASP ASP ALA SEQRES 24 A 375 PHE LYS THR HIS PRO MET ASN PHE LEU ASN GLU ARG THR SEQRES 25 A 375 LEU LYS GLY THR PHE PHE GLY ASN TYR LYS PRO LYS THR SEQRES 26 A 375 ASP ILE PRO GLY VAL VAL GLU LYS TYR MET ASN LYS GLU SEQRES 27 A 375 LEU GLU LEU GLU LYS PHE ILE THR HIS THR VAL PRO PHE SEQRES 28 A 375 SER GLU ILE ASN LYS ALA PHE ASP TYR MET LEU LYS GLY SEQRES 29 A 375 GLU SER ILE ARG CYS ILE ILE THR MET GLY ALA SEQRES 1 B 375 SER GLN ILE ILE ARG CYS LYS ALA ALA VAL ALA TRP GLU SEQRES 2 B 375 ALA GLY LYS PRO LEU VAL ILE GLU GLU VAL GLU VAL ALA SEQRES 3 B 375 PRO PRO GLN LYS HIS GLU VAL ARG ILE LYS ILE LEU PHE SEQRES 4 B 375 THR SER LEU CYS HIS THR ASP VAL TYR PHE TRP GLU ALA SEQRES 5 B 375 LYS GLY GLN THR PRO LEU PHE PRO ARG ILE PHE GLY HIS SEQRES 6 B 375 GLU ALA GLY GLY ILE VAL GLU SER VAL GLY GLU GLY VAL SEQRES 7 B 375 THR ASP LEU GLN PRO GLY ASP HIS VAL LEU PRO ILE PHE SEQRES 8 B 375 THR GLY GLU CYS GLY GLU CYS ARG HIS CYS HIS SER GLU SEQRES 9 B 375 GLU SER ASN MET CYS ASP LEU LEU ARG ILE ASN THR GLU SEQRES 10 B 375 ARG GLY GLY MET ILE HIS ASP GLY GLU SER ARG PHE SER SEQRES 11 B 375 ILE ASN GLY LYS PRO ILE TYR HIS PHE LEU GLY THR SER SEQRES 12 B 375 THR PHE SER GLU TYR THR VAL VAL HIS SER GLY GLN VAL SEQRES 13 B 375 ALA LYS ILE ASN PRO ASP ALA PRO LEU ASP LYS VAL CYS SEQRES 14 B 375 ILE VAL SER CYS GLY LEU SER THR GLY LEU GLY ALA THR SEQRES 15 B 375 LEU ASN VAL ALA LYS PRO LYS LYS GLY GLN SER VAL ALA SEQRES 16 B 375 ILE PHE GLY LEU GLY ALA VAL GLY LEU GLY ALA ALA GLU SEQRES 17 B 375 GLY ALA ARG ILE ALA GLY ALA SER ARG ILE ILE GLY VAL SEQRES 18 B 375 ASP PHE ASN SER LYS ARG PHE ASP GLN ALA LYS GLU PHE SEQRES 19 B 375 GLY VAL THR GLU CYS VAL ASN PRO LYS ASP HIS ASP LYS SEQRES 20 B 375 PRO ILE GLN GLN VAL ILE ALA GLU MET THR ASP GLY GLY SEQRES 21 B 375 VAL ASP ARG SER VAL GLU CYS THR GLY SER VAL GLN ALA SEQRES 22 B 375 MET ILE GLN ALA PHE GLU CYS VAL HIS ASP GLY TRP GLY SEQRES 23 B 375 VAL ALA VAL LEU VAL GLY VAL PRO SER LYS ASP ASP ALA SEQRES 24 B 375 PHE LYS THR HIS PRO MET ASN PHE LEU ASN GLU ARG THR SEQRES 25 B 375 LEU LYS GLY THR PHE PHE GLY ASN TYR LYS PRO LYS THR SEQRES 26 B 375 ASP ILE PRO GLY VAL VAL GLU LYS TYR MET ASN LYS GLU SEQRES 27 B 375 LEU GLU LEU GLU LYS PHE ILE THR HIS THR VAL PRO PHE SEQRES 28 B 375 SER GLU ILE ASN LYS ALA PHE ASP TYR MET LEU LYS GLY SEQRES 29 B 375 GLU SER ILE ARG CYS ILE ILE THR MET GLY ALA HET ZN A 400 1 HET ZN A 401 1 HET ZN B 401 1 HET ZN B 402 1 HET NAD B 403 70 HETNAM ZN ZINC ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 3 ZN 4(ZN 2+) FORMUL 7 NAD C21 H27 N7 O14 P2 FORMUL 8 HOH *71(H2 O) HELIX 1 1 CYS A 47 ALA A 56 1 10 HELIX 2 2 CYS A 102 SER A 107 1 6 HELIX 3 3 PRO A 168 CYS A 173 1 6 HELIX 4 4 ILE A 174 SER A 176 5 3 HELIX 5 5 CYS A 177 VAL A 189 1 13 HELIX 6 6 GLY A 204 GLY A 218 1 15 HELIX 7 7 ASN A 228 LYS A 230 5 3 HELIX 8 8 ARG A 231 LYS A 236 1 6 HELIX 9 9 GLU A 237 GLY A 239 5 3 HELIX 10 10 ASN A 245 HIS A 249 5 5 HELIX 11 11 PRO A 252 THR A 261 1 10 HELIX 12 12 SER A 274 CYS A 284 1 11 HELIX 13 13 PRO A 308 ASN A 313 1 6 HELIX 14 14 PHE A 321 TYR A 325 5 5 HELIX 15 15 LYS A 326 ASN A 340 1 15 HELIX 16 16 LEU A 345 LYS A 347 5 3 HELIX 17 17 GLU A 357 LYS A 367 1 11 HELIX 18 18 CYS B 47 GLU B 55 1 9 HELIX 19 19 CYS B 102 SER B 107 1 6 HELIX 20 20 PRO B 168 CYS B 173 1 6 HELIX 21 21 ILE B 174 SER B 176 5 3 HELIX 22 22 CYS B 177 ASN B 188 1 12 HELIX 23 23 GLY B 204 GLY B 218 1 15 HELIX 24 24 ASN B 228 LYS B 230 5 3 HELIX 25 25 ARG B 231 LYS B 236 1 6 HELIX 26 26 GLU B 237 GLY B 239 5 3 HELIX 27 27 ASN B 245 HIS B 249 5 5 HELIX 28 28 PRO B 252 THR B 261 1 10 HELIX 29 29 SER B 274 CYS B 284 1 11 HELIX 30 30 PRO B 308 ASN B 313 1 6 HELIX 31 31 PHE B 321 TYR B 325 5 5 HELIX 32 32 ASP B 330 ASN B 340 1 11 HELIX 33 33 LEU B 345 LYS B 347 5 3 HELIX 34 34 ILE B 358 LYS B 367 1 10 SHEET 1 A 4 ILE A 8 VAL A 14 0 SHEET 2 A 4 VAL A 23 VAL A 29 -1 O GLU A 25 N ALA A 12 SHEET 3 A 4 PHE A 133 ILE A 135 -1 O SER A 134 N GLU A 28 SHEET 4 A 4 LYS A 138 PRO A 139 -1 O LYS A 138 N ILE A 135 SHEET 1 B 5 TYR A 152 HIS A 156 0 SHEET 2 B 5 GLU A 36 SER A 45 -1 N VAL A 37 O VAL A 155 SHEET 3 B 5 ALA A 71 VAL A 78 -1 O ILE A 74 N LYS A 40 SHEET 4 B 5 HIS A 90 PRO A 93 -1 O VAL A 91 N GLY A 73 SHEET 5 B 5 VAL A 160 LYS A 162 -1 O ALA A 161 N LEU A 92 SHEET 1 C 4 TYR A 152 HIS A 156 0 SHEET 2 C 4 GLU A 36 SER A 45 -1 N VAL A 37 O VAL A 155 SHEET 3 C 4 ARG A 372 THR A 376 -1 O ILE A 375 N THR A 44 SHEET 4 C 4 ILE A 349 PRO A 354 1 N THR A 350 O ARG A 372 SHEET 1 D12 GLU A 242 VAL A 244 0 SHEET 2 D12 ARG A 221 VAL A 225 1 N GLY A 224 O GLU A 242 SHEET 3 D12 SER A 197 PHE A 201 1 N VAL A 198 O ILE A 223 SHEET 4 D12 ARG A 267 GLU A 270 1 O VAL A 269 N PHE A 201 SHEET 5 D12 VAL A 291 LEU A 294 1 O VAL A 293 N GLU A 270 SHEET 6 D12 THR A 316 GLY A 319 1 O LYS A 318 N ALA A 292 SHEET 7 D12 THR B 316 GLY B 319 -1 O LEU B 317 N LEU A 317 SHEET 8 D12 VAL B 291 LEU B 294 1 N ALA B 292 O LYS B 318 SHEET 9 D12 ARG B 267 GLU B 270 1 N GLU B 270 O VAL B 293 SHEET 10 D12 SER B 197 PHE B 201 1 N ALA B 199 O VAL B 269 SHEET 11 D12 ARG B 221 VAL B 225 1 O ARG B 221 N VAL B 198 SHEET 12 D12 GLU B 242 VAL B 244 1 O GLU B 242 N GLY B 224 SHEET 1 E 4 ILE B 8 VAL B 14 0 SHEET 2 E 4 VAL B 23 VAL B 29 -1 O VAL B 29 N ILE B 8 SHEET 3 E 4 PHE B 133 ILE B 135 -1 O SER B 134 N GLU B 28 SHEET 4 E 4 LYS B 138 ILE B 140 -1 O LYS B 138 N ILE B 135 SHEET 1 F 5 TYR B 152 HIS B 156 0 SHEET 2 F 5 GLU B 36 SER B 45 -1 N ILE B 39 O THR B 153 SHEET 3 F 5 GLU B 70 VAL B 78 -1 O SER B 77 N ARG B 38 SHEET 4 F 5 HIS B 90 PRO B 93 -1 O VAL B 91 N GLY B 73 SHEET 5 F 5 VAL B 160 ILE B 163 -1 O ALA B 161 N LEU B 92 SHEET 1 G 4 TYR B 152 HIS B 156 0 SHEET 2 G 4 GLU B 36 SER B 45 -1 N ILE B 39 O THR B 153 SHEET 3 G 4 ARG B 372 THR B 376 -1 O ILE B 375 N THR B 44 SHEET 4 G 4 ILE B 349 PRO B 354 1 N VAL B 353 O ILE B 374 SSBOND 1 CYS A 99 CYS A 113 1555 1555 2.99 LINK SG CYS A 47 ZN ZN A 401 1555 1555 1.94 LINK NE2 HIS A 69 ZN ZN A 401 1555 1555 2.07 LINK SG CYS A 99 ZN ZN A 400 1555 1555 2.15 LINK SG CYS A 102 ZN ZN A 400 1555 1555 2.18 LINK SG CYS A 105 ZN ZN A 400 1555 1555 2.17 LINK SG CYS A 113 ZN ZN A 400 1555 1555 2.04 LINK SG CYS A 177 ZN ZN A 401 1555 1555 2.26 LINK SG CYS B 47 ZN ZN B 402 1555 1555 2.27 LINK NE2 HIS B 69 ZN ZN B 402 1555 1555 1.99 LINK SG CYS B 99 ZN ZN B 401 1555 1555 2.33 LINK SG CYS B 102 ZN ZN B 401 1555 1555 2.07 LINK SG CYS B 105 ZN ZN B 401 1555 1555 2.16 LINK SG CYS B 113 ZN ZN B 401 1555 1555 2.18 LINK SG CYS B 177 ZN ZN B 402 1555 1555 2.10 LINK ZN ZN B 402 O HOH B 506 1555 1555 2.01 CISPEP 1 PHE A 63 PRO A 64 0 -1.45 CISPEP 2 PHE B 63 PRO B 64 0 0.05 SITE 1 AC1 4 CYS A 99 CYS A 102 CYS A 105 CYS A 113 SITE 1 AC2 3 CYS A 47 HIS A 69 CYS A 177 SITE 1 AC3 4 CYS B 99 CYS B 102 CYS B 105 CYS B 113 SITE 1 AC4 6 CYS B 47 THR B 49 HIS B 69 CYS B 177 SITE 2 AC4 6 NAD B 403 HOH B 506 SITE 1 AC5 21 HIS B 48 THR B 49 PHE B 95 CYS B 177 SITE 2 AC5 21 THR B 181 GLY B 202 GLY B 204 ALA B 205 SITE 3 AC5 21 VAL B 206 ASP B 226 PHE B 227 ASN B 228 SITE 4 AC5 21 ARG B 231 CYS B 271 THR B 272 VAL B 295 SITE 5 AC5 21 VAL B 297 PHE B 322 ARG B 372 ZN B 402 SITE 6 AC5 21 HOH B 502 CRYST1 101.150 101.150 165.640 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009886 0.005708 0.000000 0.00000 SCALE2 0.000000 0.011416 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006037 0.00000