HEADER LIGASE 06-NOV-14 4RRG TITLE EDITING DOMAIN OF THREONYL-TRNA SYNTHETASE FROM METHANOCOCCUS TITLE 2 JANNASCHII WITH L-THR3AA COMPND MOL_ID: 1; COMPND 2 MOLECULE: THREONINE--TRNA LIGASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 1-141; COMPND 5 SYNONYM: THREONYL-TRNA SYNTHETASE, THRRS; COMPND 6 EC: 6.1.1.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 243232; SOURCE 4 STRAIN: ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440; SOURCE 5 GENE: THRS, MJ1197; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DTD-LIKE FOLD, PROOFREADING, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR S.AHMAD,A.S.K.YERABHAM,V.KAMARTHAPU,R.SANKARANARAYANAN REVDAT 3 28-FEB-24 4RRG 1 REMARK REVDAT 2 22-NOV-17 4RRG 1 REMARK REVDAT 1 15-JUL-15 4RRG 0 JRNL AUTH S.AHMAD,S.MUTHUKUMAR,S.K.KUNCHA,S.B.ROUTH,A.S.YERABHAM, JRNL AUTH 2 T.HUSSAIN,V.KAMARTHAPU,S.P.KRUPARANI,R.SANKARANARAYANAN JRNL TITL SPECIFICITY AND CATALYSIS HARDWIRED AT THE RNA-PROTEIN JRNL TITL 2 INTERFACE IN A TRANSLATIONAL PROOFREADING ENZYME. JRNL REF NAT COMMUN V. 6 7552 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26113036 JRNL DOI 10.1038/NCOMMS8552 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 32739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1737 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.93 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2234 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 132 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4359 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 283 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.49000 REMARK 3 B22 (A**2) : -0.57000 REMARK 3 B33 (A**2) : -0.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.40000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.224 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.173 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.113 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.766 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4495 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6067 ; 1.185 ; 2.008 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 547 ; 6.420 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 188 ;38.718 ;25.532 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 849 ;13.530 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;10.206 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 692 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3276 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2761 ; 0.545 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4453 ; 1.081 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1734 ; 1.833 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1614 ; 3.146 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RRG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000087705. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32739 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS HCL, 0.2M MGCL2, 25% REMARK 280 PEG3350, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.44250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 143 REMARK 465 GLU A 144 REMARK 465 GLU A 145 REMARK 465 LYS B 143 REMARK 465 GLU B 144 REMARK 465 GLU B 145 REMARK 465 ALA C 142 REMARK 465 LYS C 143 REMARK 465 GLU C 144 REMARK 465 GLU C 145 REMARK 465 LYS D 143 REMARK 465 GLU D 144 REMARK 465 GLU D 145 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 93 CB CG CD OE1 OE2 REMARK 480 GLU A 108 CB CG CD OE1 OE2 REMARK 480 GLU B 28 CB CG CD OE1 OE2 REMARK 480 ASN B 31 CB CG OD1 ND2 REMARK 480 LYS D 6 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 241 O HOH D 270 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 38 86.74 33.69 REMARK 500 ASN A 53 81.80 -158.03 REMARK 500 ASN B 53 76.76 -156.20 REMARK 500 LYS C 20 -74.66 -122.14 REMARK 500 ASN C 53 80.60 -153.44 REMARK 500 TYR C 82 83.39 -154.41 REMARK 500 ASP C 88 64.57 -115.45 REMARK 500 GLU C 135 85.19 -152.12 REMARK 500 ASN D 53 76.13 -151.89 REMARK 500 TYR D 82 81.45 -150.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE A3T A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE A3T B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE A3T C 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RR6 RELATED DB: PDB REMARK 900 RELATED ID: 4RR7 RELATED DB: PDB REMARK 900 RELATED ID: 4RR8 RELATED DB: PDB REMARK 900 RELATED ID: 4RR9 RELATED DB: PDB REMARK 900 RELATED ID: 4RRA RELATED DB: PDB REMARK 900 RELATED ID: 4RRB RELATED DB: PDB REMARK 900 RELATED ID: 4RRC RELATED DB: PDB REMARK 900 RELATED ID: 4RRD RELATED DB: PDB REMARK 900 RELATED ID: 4RRF RELATED DB: PDB REMARK 900 RELATED ID: 4RRH RELATED DB: PDB REMARK 900 RELATED ID: 4RRI RELATED DB: PDB REMARK 900 RELATED ID: 4RRJ RELATED DB: PDB REMARK 900 RELATED ID: 4RRK RELATED DB: PDB REMARK 900 RELATED ID: 4RRL RELATED DB: PDB REMARK 900 RELATED ID: 4RRM RELATED DB: PDB REMARK 900 RELATED ID: 4RRQ RELATED DB: PDB REMARK 900 RELATED ID: 4RRR RELATED DB: PDB DBREF 4RRG A 5 145 UNP Q58597 SYT_METJA 1 141 DBREF 4RRG B 5 145 UNP Q58597 SYT_METJA 1 141 DBREF 4RRG C 5 145 UNP Q58597 SYT_METJA 1 141 DBREF 4RRG D 5 145 UNP Q58597 SYT_METJA 1 141 SEQRES 1 A 141 MET LYS MET LEU LEU ILE HIS SER ASP TYR LEU GLU PHE SEQRES 2 A 141 GLU ALA LYS GLU LYS THR LYS ILE ALA GLU GLU THR GLU SEQRES 3 A 141 ASN LEU LYS GLY LYS LEU ASP GLU CYS LEU ALA CYS PHE SEQRES 4 A 141 ILE ALA VAL GLU ARG GLU ASP GLU ASN ASN PRO GLU GLY SEQRES 5 A 141 THR ALA ILE GLY ALA VAL GLU GLU ILE GLU LYS VAL ALA SEQRES 6 A 141 ASN GLN LEU LYS VAL ASN ASN ILE VAL VAL TYR PRO TYR SEQRES 7 A 141 ALA HIS LEU SER SER ASP LEU SER SER PRO GLU THR ALA SEQRES 8 A 141 VAL LYS VAL LEU LYS ASP ILE GLU SER ILE LEU LYS GLU SEQRES 9 A 141 ARG GLY TYR ASN VAL LEU ARG ALA PRO PHE GLY TRP TYR SEQRES 10 A 141 LYS ALA PHE LYS ILE SER CYS LYS GLY HIS PRO LEU SER SEQRES 11 A 141 GLU LEU SER ARG LYS ILE VAL ALA LYS GLU GLU SEQRES 1 B 141 MET LYS MET LEU LEU ILE HIS SER ASP TYR LEU GLU PHE SEQRES 2 B 141 GLU ALA LYS GLU LYS THR LYS ILE ALA GLU GLU THR GLU SEQRES 3 B 141 ASN LEU LYS GLY LYS LEU ASP GLU CYS LEU ALA CYS PHE SEQRES 4 B 141 ILE ALA VAL GLU ARG GLU ASP GLU ASN ASN PRO GLU GLY SEQRES 5 B 141 THR ALA ILE GLY ALA VAL GLU GLU ILE GLU LYS VAL ALA SEQRES 6 B 141 ASN GLN LEU LYS VAL ASN ASN ILE VAL VAL TYR PRO TYR SEQRES 7 B 141 ALA HIS LEU SER SER ASP LEU SER SER PRO GLU THR ALA SEQRES 8 B 141 VAL LYS VAL LEU LYS ASP ILE GLU SER ILE LEU LYS GLU SEQRES 9 B 141 ARG GLY TYR ASN VAL LEU ARG ALA PRO PHE GLY TRP TYR SEQRES 10 B 141 LYS ALA PHE LYS ILE SER CYS LYS GLY HIS PRO LEU SER SEQRES 11 B 141 GLU LEU SER ARG LYS ILE VAL ALA LYS GLU GLU SEQRES 1 C 141 MET LYS MET LEU LEU ILE HIS SER ASP TYR LEU GLU PHE SEQRES 2 C 141 GLU ALA LYS GLU LYS THR LYS ILE ALA GLU GLU THR GLU SEQRES 3 C 141 ASN LEU LYS GLY LYS LEU ASP GLU CYS LEU ALA CYS PHE SEQRES 4 C 141 ILE ALA VAL GLU ARG GLU ASP GLU ASN ASN PRO GLU GLY SEQRES 5 C 141 THR ALA ILE GLY ALA VAL GLU GLU ILE GLU LYS VAL ALA SEQRES 6 C 141 ASN GLN LEU LYS VAL ASN ASN ILE VAL VAL TYR PRO TYR SEQRES 7 C 141 ALA HIS LEU SER SER ASP LEU SER SER PRO GLU THR ALA SEQRES 8 C 141 VAL LYS VAL LEU LYS ASP ILE GLU SER ILE LEU LYS GLU SEQRES 9 C 141 ARG GLY TYR ASN VAL LEU ARG ALA PRO PHE GLY TRP TYR SEQRES 10 C 141 LYS ALA PHE LYS ILE SER CYS LYS GLY HIS PRO LEU SER SEQRES 11 C 141 GLU LEU SER ARG LYS ILE VAL ALA LYS GLU GLU SEQRES 1 D 141 MET LYS MET LEU LEU ILE HIS SER ASP TYR LEU GLU PHE SEQRES 2 D 141 GLU ALA LYS GLU LYS THR LYS ILE ALA GLU GLU THR GLU SEQRES 3 D 141 ASN LEU LYS GLY LYS LEU ASP GLU CYS LEU ALA CYS PHE SEQRES 4 D 141 ILE ALA VAL GLU ARG GLU ASP GLU ASN ASN PRO GLU GLY SEQRES 5 D 141 THR ALA ILE GLY ALA VAL GLU GLU ILE GLU LYS VAL ALA SEQRES 6 D 141 ASN GLN LEU LYS VAL ASN ASN ILE VAL VAL TYR PRO TYR SEQRES 7 D 141 ALA HIS LEU SER SER ASP LEU SER SER PRO GLU THR ALA SEQRES 8 D 141 VAL LYS VAL LEU LYS ASP ILE GLU SER ILE LEU LYS GLU SEQRES 9 D 141 ARG GLY TYR ASN VAL LEU ARG ALA PRO PHE GLY TRP TYR SEQRES 10 D 141 LYS ALA PHE LYS ILE SER CYS LYS GLY HIS PRO LEU SER SEQRES 11 D 141 GLU LEU SER ARG LYS ILE VAL ALA LYS GLU GLU HET A3T A 501 26 HET A3T B 201 26 HET A3T C 201 26 HETNAM A3T 3'-DEOXY-3'-(L-THREONYLAMINO)ADENOSINE FORMUL 5 A3T 3(C14 H21 N7 O5) FORMUL 8 HOH *283(H2 O) HELIX 1 1 GLU A 47 ASN A 52 5 6 HELIX 2 2 ASN A 53 LEU A 72 1 20 HELIX 3 3 ALA A 83 SER A 86 5 4 HELIX 4 4 SER A 91 ARG A 109 1 19 HELIX 5 5 GLU B 47 ASN B 52 5 6 HELIX 6 6 ASN B 53 LYS B 73 1 21 HELIX 7 7 ALA B 83 SER B 86 5 4 HELIX 8 8 SER B 91 ARG B 109 1 19 HELIX 9 9 GLU C 47 ASN C 52 5 6 HELIX 10 10 ASN C 53 LYS C 73 1 21 HELIX 11 11 ALA C 83 SER C 86 5 4 HELIX 12 12 SER C 91 ARG C 109 1 19 HELIX 13 13 GLU D 47 ASN D 52 5 6 HELIX 14 14 ASN D 53 LYS D 73 1 21 HELIX 15 15 ALA D 83 SER D 86 5 4 HELIX 16 16 SER D 91 ARG D 109 1 19 SHEET 1 A10 ASN A 112 ARG A 115 0 SHEET 2 A10 ASN A 76 PRO A 81 1 N ILE A 77 O ASN A 112 SHEET 3 A10 LYS A 33 ALA A 45 1 N CYS A 42 O VAL A 78 SHEET 4 A10 LYS A 6 LYS A 22 -1 N ASP A 13 O GLU A 38 SHEET 5 A10 TRP A 120 CYS A 128 -1 O TYR A 121 N GLU A 21 SHEET 6 A10 TRP B 120 CYS B 128 -1 O CYS B 128 N PHE A 124 SHEET 7 A10 LYS B 6 LYS B 22 -1 N LYS B 20 O TYR B 121 SHEET 8 A10 LYS B 33 ALA B 45 -1 O CYS B 39 N SER B 12 SHEET 9 A10 ASN B 76 PRO B 81 1 O VAL B 78 N CYS B 42 SHEET 10 A10 ASN B 112 ARG B 115 1 O ASN B 112 N ILE B 77 SHEET 1 B 6 GLU A 135 LYS A 139 0 SHEET 2 B 6 LYS A 6 LYS A 22 -1 N LEU A 9 O LEU A 136 SHEET 3 B 6 TRP A 120 CYS A 128 -1 O TYR A 121 N GLU A 21 SHEET 4 B 6 TRP B 120 CYS B 128 -1 O CYS B 128 N PHE A 124 SHEET 5 B 6 LYS B 6 LYS B 22 -1 N LYS B 20 O TYR B 121 SHEET 6 B 6 GLU B 135 LYS B 139 -1 O LEU B 136 N LEU B 9 SHEET 1 C10 ASN C 112 ARG C 115 0 SHEET 2 C10 ASN C 76 PRO C 81 1 N ILE C 77 O ASN C 112 SHEET 3 C10 LYS C 33 ALA C 45 1 N CYS C 42 O VAL C 78 SHEET 4 C10 LYS C 6 LYS C 22 -1 N SER C 12 O CYS C 39 SHEET 5 C10 TRP C 120 CYS C 128 -1 O TYR C 121 N LYS C 20 SHEET 6 C10 TRP D 120 CYS D 128 -1 O PHE D 124 N CYS C 128 SHEET 7 C10 LYS D 6 LYS D 22 -1 N LYS D 20 O TYR D 121 SHEET 8 C10 LYS D 33 ALA D 45 -1 O CYS D 39 N SER D 12 SHEET 9 C10 ASN D 76 PRO D 81 1 O VAL D 78 N CYS D 42 SHEET 10 C10 ASN D 112 ARG D 115 1 O LEU D 114 N VAL D 79 SHEET 1 D 6 GLU C 135 LYS C 139 0 SHEET 2 D 6 LYS C 6 LYS C 22 -1 N LEU C 9 O LEU C 136 SHEET 3 D 6 TRP C 120 CYS C 128 -1 O TYR C 121 N LYS C 20 SHEET 4 D 6 TRP D 120 CYS D 128 -1 O PHE D 124 N CYS C 128 SHEET 5 D 6 LYS D 6 LYS D 22 -1 N LYS D 20 O TYR D 121 SHEET 6 D 6 GLU D 135 LYS D 139 -1 O LEU D 136 N LEU D 9 SITE 1 AC1 13 ILE A 25 ILE A 44 VAL A 46 PRO A 81 SITE 2 AC1 13 TYR A 82 ALA A 83 HIS A 84 SER A 90 SITE 3 AC1 13 ALA A 95 PHE A 118 GLY A 119 HOH A 601 SITE 4 AC1 13 GLU B 135 SITE 1 AC2 15 GLU A 135 ILE B 25 ILE B 44 VAL B 46 SITE 2 AC2 15 TYR B 82 ALA B 83 HIS B 84 LEU B 89 SITE 3 AC2 15 SER B 90 ALA B 95 PHE B 118 GLY B 119 SITE 4 AC2 15 TYR B 121 HOH B 302 HOH B 344 SITE 1 AC3 13 ILE C 25 ILE C 44 VAL C 46 TYR C 82 SITE 2 AC3 13 ALA C 83 HIS C 84 LEU C 89 SER C 90 SITE 3 AC3 13 ALA C 95 PHE C 118 GLY C 119 HOH C 302 SITE 4 AC3 13 GLU D 135 CRYST1 36.569 64.885 97.752 90.00 91.07 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027346 0.000000 0.000513 0.00000 SCALE2 0.000000 0.015412 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010232 0.00000