HEADER TRANSPORT PROTEIN 06-NOV-14 4RS3 TITLE CRYSTAL STRUCTURE OF CARBOHYDRATE TRANSPORTER A0QYB3 FROM TITLE 2 MYCOBACTERIUM SMEGMATIS STR. MC2 155, TARGET EFI-510969, IN COMPLEX TITLE 3 WITH XYLITOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC TRANSPORTER, CARBOHYDRATE UPTAKE TRANSPORTER-2 (CUT2) COMPND 3 FAMILY, PERIPLASMIC SUGAR-BINDING PROTEIN; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RESIDUES 25-349; COMPND 6 SYNONYM: PERIPLASMIC SUGAR-BINDING PROTEINS; COMPND 7 EC: 3.6.3.17; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS STR. MC2 155; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: ATCC 700084 / MC(2)155; SOURCE 5 GENE: MSMEG_3598, MSMEI_3515; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS SUGAR TRANSPORTER, ABC-TYPE, ENZYME FUNCTION INITIATIVE, EFI, KEYWDS 2 STRUCTURAL GENOMICS, TRANSPORT PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.TORO,R.BHOSLE,N.AL OBAIDI,L.L.MORISCO,S.R.WASSERMAN, AUTHOR 2 S.CHAMALA,J.D.ATTONITO,A.SCOTT GLENN,S.CHOWDHURY,J.LAFLEUR, AUTHOR 3 B.HILLERICH,R.D.SIEDEL,J.LOVE,K.L.WHALEN,J.A.GERLT,S.C.ALMO,ENZYME AUTHOR 4 FUNCTION INITIATIVE (EFI) REVDAT 6 16-OCT-24 4RS3 1 HETSYN REVDAT 5 29-JUL-20 4RS3 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE REVDAT 4 24-JAN-18 4RS3 1 AUTHOR REVDAT 3 01-JUN-16 4RS3 1 JRNL REVDAT 2 31-DEC-14 4RS3 1 AUTHOR REVDAT 1 19-NOV-14 4RS3 0 JRNL AUTH H.HUANG,M.S.CARTER,M.W.VETTING,N.AL-OBAIDI,Y.PATSKOVSKY, JRNL AUTH 2 S.C.ALMO,J.A.GERLT JRNL TITL A GENERAL STRATEGY FOR THE DISCOVERY OF METABOLIC PATHWAYS: JRNL TITL 2 D-THREITOL, L-THREITOL, AND ERYTHRITOL UTILIZATION IN JRNL TITL 3 MYCOBACTERIUM SMEGMATIS. JRNL REF J.AM.CHEM.SOC. V. 137 14570 2015 JRNL REFN ISSN 0002-7863 JRNL PMID 26560079 JRNL DOI 10.1021/JACS.5B08968 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 55931 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.125 REMARK 3 R VALUE (WORKING SET) : 0.124 REMARK 3 FREE R VALUE : 0.163 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1794 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4054 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.1520 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.2170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2313 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 73 REMARK 3 SOLVENT ATOMS : 228 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.53000 REMARK 3 B22 (A**2) : -0.34000 REMARK 3 B33 (A**2) : 0.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.051 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.050 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.034 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.934 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2425 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2362 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3289 ; 1.959 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5448 ; 1.027 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 328 ; 6.261 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 101 ;41.240 ;27.525 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 387 ;13.257 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;24.549 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 385 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2838 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 490 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1280 ; 4.416 ; 1.845 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1275 ; 4.159 ; 1.832 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1598 ; 4.940 ; 3.105 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1599 ; 5.026 ; 3.111 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1145 ;11.857 ; 2.733 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1146 ;11.854 ; 2.734 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1686 ;11.089 ; 4.164 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2938 ; 8.848 ; 8.018 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2939 ; 8.847 ; 8.021 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4787 ; 7.378 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 68 ;31.607 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4952 ;21.217 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RS3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000087728. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57826 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 14.60 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 13.90 REMARK 200 R MERGE FOR SHELL (I) : 0.72000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10 MM HEPES PH 7.5, 5 MM DTT, REMARK 280 10 MM DL-XYLITOL), RESERVOIR: 0.1 M IMIDAZOLE-HCL, PH 8.0, 0.2M REMARK 280 ZINC ACETATE, 2.5M SODIUM CHLORIDE; CRYOPROTECTION: RESERVOIR REMARK 280 SOLUTION; VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.42050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.56700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.53500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.56700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.42050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.53500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 23 REMARK 465 MSE A 24 REMARK 465 ALA A 25 REMARK 465 GLY A 26 REMARK 465 ASP A 27 REMARK 465 THR A 28 REMARK 465 ALA A 29 REMARK 465 ALA A 30 REMARK 465 ASN A 31 REMARK 465 SER A 32 REMARK 465 ASP A 33 REMARK 465 PRO A 349 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 292 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 53 CD GLU A 53 OE1 -0.078 REMARK 500 GLU A 201 CD GLU A 201 OE1 -0.081 REMARK 500 GLU A 252 CD GLU A 252 OE2 0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 55 CG - SE - CE ANGL. DEV. = -21.7 DEGREES REMARK 500 ASP A 193 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 199 CB - CG - CD ANGL. DEV. = -18.2 DEGREES REMARK 500 ARG A 199 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 199 NE - CZ - NH2 ANGL. DEV. = 4.8 DEGREES REMARK 500 PHE A 263 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 PHE A 263 CB - CG - CD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 121 -40.48 74.29 REMARK 500 ASN A 132 97.57 -161.72 REMARK 500 ASP A 249 -38.37 138.85 REMARK 500 VAL A 315 -63.96 -120.97 REMARK 500 GLU A 341 12.71 -146.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 50 OE2 REMARK 620 2 GLU A 252 OE2 96.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 53 OE2 REMARK 620 2 IMD A 414 N1 104.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 409 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 136 OD2 REMARK 620 2 HOH A 665 O 118.7 REMARK 620 3 HOH A 670 O 99.5 113.0 REMARK 620 4 HOH A 717 O 112.3 104.4 108.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 150 OD2 REMARK 620 2 IMD A 413 N1 115.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 410 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 178 OD1 REMARK 620 2 ACT A 433 OXT 105.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 411 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 218 OD2 REMARK 620 2 ACT A 436 OXT 125.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 406 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 237 OE2 REMARK 620 2 GLU A 237 OE1 51.6 REMARK 620 3 IMD A 416 N3 100.8 148.5 REMARK 620 4 ACT A 434 O 127.0 83.4 109.2 REMARK 620 5 HOH A 711 O 110.7 106.5 97.1 107.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 408 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 337 OD2 REMARK 620 2 ASP A 337 OD1 56.9 REMARK 620 3 HOH A 708 O 90.0 85.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 412 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 IMD A 415 N3 REMARK 620 2 HOH A 681 O 73.5 REMARK 620 3 HOH A 681 O 98.7 62.8 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-510969 RELATED DB: TARGETTRACK DBREF 4RS3 A 25 349 UNP A0QYB3 A0QYB3_MYCS2 25 349 SEQADV 4RS3 SER A 23 UNP A0QYB3 EXPRESSION TAG SEQADV 4RS3 MSE A 24 UNP A0QYB3 EXPRESSION TAG SEQRES 1 A 327 SER MSE ALA GLY ASP THR ALA ALA ASN SER ASP THR LYS SEQRES 2 A 327 ARG ILE GLY VAL THR VAL TYR ASP MSE SER SER PHE ILE SEQRES 3 A 327 THR GLU GLY LYS GLU GLY MSE ASP THR TYR ALA LYS ALA SEQRES 4 A 327 ASN ASN ILE GLU LEU VAL TRP ASN SER ALA ASN ASN ASP SEQRES 5 A 327 VAL SER THR GLN ALA SER GLN VAL ASP SER LEU ILE ASN SEQRES 6 A 327 GLN GLY VAL ASP ALA ILE ILE VAL VAL PRO VAL GLN ALA SEQRES 7 A 327 ASP SER LEU GLY PRO GLN VAL ALA SER ALA LYS SER LYS SEQRES 8 A 327 GLY ILE PRO LEU LEU ALA VAL ASN ALA ALA LEU GLU THR SEQRES 9 A 327 PRO ASP LEU ALA GLY ASN VAL GLN PRO ASP ASP VAL ALA SEQRES 10 A 327 ALA GLY ALA GLN GLU MSE GLN MSE MSE ALA ASP ARG LEU SEQRES 11 A 327 GLY GLY LYS GLY ASN ILE VAL ILE LEU GLN GLY PRO LEU SEQRES 12 A 327 GLY GLY SER GLY GLU ILE ASN ARG GLY LYS GLY ILE ASP SEQRES 13 A 327 GLN VAL LEU ALA LYS TYR PRO ASP ILE LYS VAL LEU ALA SEQRES 14 A 327 LYS ASP THR ALA ASN TRP LYS ARG ASP GLU ALA VAL ASN SEQRES 15 A 327 LYS MSE LYS ASN TRP ILE SER SER PHE GLY PRO GLN ILE SEQRES 16 A 327 ASP GLY VAL VAL ALA GLN ASN ASP ASP MSE GLY LEU GLY SEQRES 17 A 327 ALA LEU GLN ALA LEU LYS GLU ALA GLY ARG THR GLY VAL SEQRES 18 A 327 PRO ILE VAL GLY ILE ASP GLY ILE GLU ASP GLY LEU ASN SEQRES 19 A 327 ALA VAL LYS SER GLY ASP PHE ILE GLY THR SER LEU GLN SEQRES 20 A 327 ASN GLY THR VAL GLU LEU SER ALA GLY LEU ALA VAL ALA SEQRES 21 A 327 ASP ALA LEU VAL LYS GLY GLU ASP VAL LYS THR ASP PRO SEQRES 22 A 327 VAL TYR VAL MSE PRO ALA ILE THR LYS ASP ASN VAL ASP SEQRES 23 A 327 VAL ALA ILE GLU HIS VAL VAL THR GLU ARG GLN LYS PHE SEQRES 24 A 327 LEU ASP GLY LEU VAL GLU LEU THR GLN GLN ASN LEU LYS SEQRES 25 A 327 THR GLY ASP ILE ALA TYR GLU GLY ILE PRO GLY GLN THR SEQRES 26 A 327 GLN PRO MODRES 4RS3 MSE A 44 MET SELENOMETHIONINE MODRES 4RS3 MSE A 55 MET SELENOMETHIONINE MODRES 4RS3 MSE A 145 MET SELENOMETHIONINE MODRES 4RS3 MSE A 147 MET SELENOMETHIONINE MODRES 4RS3 MSE A 148 MET SELENOMETHIONINE MODRES 4RS3 MSE A 206 MET SELENOMETHIONINE MODRES 4RS3 MSE A 227 MET SELENOMETHIONINE MODRES 4RS3 MSE A 299 MET SELENOMETHIONINE HET MSE A 44 8 HET MSE A 55 13 HET MSE A 145 8 HET MSE A 147 8 HET MSE A 148 8 HET MSE A 206 8 HET MSE A 227 8 HET MSE A 299 8 HET XYL A 401 10 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET ZN A 405 1 HET ZN A 406 1 HET ZN A 407 1 HET ZN A 408 1 HET ZN A 409 1 HET ZN A 410 1 HET ZN A 411 1 HET ZN A 412 1 HET IMD A 413 5 HET IMD A 414 5 HET IMD A 415 5 HET IMD A 416 5 HET CL A 417 1 HET CL A 418 1 HET CL A 419 1 HET CL A 420 1 HET CL A 421 1 HET CL A 422 1 HET CL A 423 2 HET CL A 424 1 HET CL A 425 1 HET CL A 426 1 HET CL A 427 1 HET CL A 428 1 HET CL A 429 1 HET CL A 430 1 HET CL A 431 1 HET CL A 432 1 HET ACT A 433 4 HET ACT A 434 4 HET ACT A 435 4 HET ACT A 436 4 HETNAM MSE SELENOMETHIONINE HETNAM XYL XYLITOL HETNAM ZN ZINC ION HETNAM IMD IMIDAZOLE HETNAM CL CHLORIDE ION HETNAM ACT ACETATE ION HETSYN XYL D-XYLITOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 XYL C5 H12 O5 FORMUL 3 ZN 11(ZN 2+) FORMUL 14 IMD 4(C3 H5 N2 1+) FORMUL 18 CL 16(CL 1-) FORMUL 34 ACT 4(C2 H3 O2 1-) FORMUL 38 HOH *228(H2 O) HELIX 1 1 SER A 45 ASN A 62 1 18 HELIX 2 2 ASP A 74 GLY A 89 1 16 HELIX 3 3 LEU A 103 LYS A 113 1 11 HELIX 4 4 ASP A 136 GLY A 153 1 18 HELIX 5 5 GLY A 167 ALA A 182 1 16 HELIX 6 6 LYS A 198 GLY A 214 1 17 HELIX 7 7 PRO A 215 ILE A 217 5 3 HELIX 8 8 ASN A 224 ALA A 238 1 15 HELIX 9 9 ILE A 251 SER A 260 1 10 HELIX 10 10 ASN A 270 LYS A 287 1 18 HELIX 11 11 ASN A 306 VAL A 315 1 10 HELIX 12 12 GLU A 317 GLY A 336 1 20 SHEET 1 A 6 ILE A 64 SER A 70 0 SHEET 2 A 6 LYS A 35 VAL A 41 1 N LYS A 35 O GLU A 65 SHEET 3 A 6 ALA A 92 VAL A 96 1 O VAL A 96 N THR A 40 SHEET 4 A 6 LEU A 117 VAL A 120 1 O LEU A 118 N VAL A 95 SHEET 5 A 6 GLY A 131 PRO A 135 1 O VAL A 133 N ALA A 119 SHEET 6 A 6 VAL A 296 TYR A 297 1 O TYR A 297 N GLN A 134 SHEET 1 B 4 ILE A 187 THR A 194 0 SHEET 2 B 4 GLY A 156 GLN A 162 1 N ILE A 158 O LYS A 188 SHEET 3 B 4 GLY A 219 ALA A 222 1 O VAL A 221 N VAL A 159 SHEET 4 B 4 ILE A 245 VAL A 246 1 O VAL A 246 N ALA A 222 SHEET 1 C 2 THR A 266 SER A 267 0 SHEET 2 C 2 ALA A 301 ILE A 302 -1 O ILE A 302 N THR A 266 LINK C ASP A 43 N MSE A 44 1555 1555 1.33 LINK C MSE A 44 N SER A 45 1555 1555 1.33 LINK C GLY A 54 N MSE A 55 1555 1555 1.33 LINK C MSE A 55 N ASP A 56 1555 1555 1.33 LINK C GLU A 144 N MSE A 145 1555 1555 1.32 LINK C MSE A 145 N GLN A 146 1555 1555 1.33 LINK C GLN A 146 N MSE A 147 1555 1555 1.33 LINK C MSE A 147 N MSE A 148 1555 1555 1.33 LINK C MSE A 148 N ALA A 149 1555 1555 1.32 LINK C LYS A 205 N MSE A 206 1555 1555 1.34 LINK C MSE A 206 N LYS A 207 1555 1555 1.34 LINK C ASP A 226 N MSE A 227 1555 1555 1.33 LINK C MSE A 227 N GLY A 228 1555 1555 1.34 LINK C VAL A 298 N MSE A 299 1555 1555 1.32 LINK C MSE A 299 N PRO A 300 1555 1555 1.34 LINK OE2 GLU A 50 ZN ZN A 405 1555 1555 2.01 LINK OE2 GLU A 53 ZN ZN A 403 1555 1555 1.92 LINK OD2 ASP A 56 ZN ZN A 404 1555 1555 1.92 LINK OD2 ASP A 136 ZN ZN A 409 1555 1555 2.11 LINK OD2 ASP A 150 ZN ZN A 402 1555 1555 1.94 LINK OD1 ASP A 178 ZN ZN A 410 1555 1555 1.97 LINK OD1 ASP A 200 ZN ZN A 407 1555 1555 1.89 LINK OD2 ASP A 218 ZN ZN A 411 1555 1555 1.97 LINK OE2 GLU A 237 ZN ZN A 406 1555 1555 2.18 LINK OE1 GLU A 237 ZN ZN A 406 1555 1555 2.69 LINK OE2 GLU A 252 ZN ZN A 405 1555 1555 2.00 LINK OD2 ASP A 337 ZN ZN A 408 1555 1555 1.85 LINK OD1 ASP A 337 ZN ZN A 408 1555 1555 2.52 LINK ZN ZN A 402 N1 IMD A 413 1555 1555 2.09 LINK ZN ZN A 403 N1 IMD A 414 1555 1555 2.02 LINK ZN ZN A 406 N3 IMD A 416 1555 1555 2.33 LINK ZN ZN A 406 O ACT A 434 1555 1555 2.06 LINK ZN ZN A 406 O HOH A 711 1555 1555 2.05 LINK ZN ZN A 408 O HOH A 708 1555 1555 2.22 LINK ZN ZN A 409 O HOH A 665 1555 1555 2.03 LINK ZN ZN A 409 O HOH A 670 1555 1555 2.19 LINK ZN ZN A 409 O HOH A 717 1555 1555 2.21 LINK ZN ZN A 410 OXT ACT A 433 1555 1555 2.00 LINK ZN ZN A 411 OXT ACT A 436 1555 1555 1.83 LINK ZN ZN A 412 N3 IMD A 415 1555 1555 1.98 LINK ZN ZN A 412 O AHOH A 681 1555 1555 1.84 LINK ZN ZN A 412 O BHOH A 681 1555 1555 2.06 CRYST1 62.841 63.070 73.134 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015913 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015855 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013674 0.00000