HEADER HYDROLASE/HYDROLASE INHIBITOR 12-NOV-14 4RSY TITLE CRYSTAL STRUCTURES OF THE HUMAN LEUKOTRIENE A4 HYDROLASE COMPLEX WITH TITLE 2 A POTENTIAL INHIBITOR H7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUKOTRIENE A-4 HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LTA-4 HYDROLASE, LEUKOTRIENE A(4) HYDROLASE; COMPND 5 EC: 3.3.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LTA4H, LTA4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HUMAN LEUKOTRIENE A4 HYDROLASE, LTA4H', HYDROLASE-HYDROLASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.OUYANG,W.LU,K.CUI,J.HUANG REVDAT 2 20-MAR-24 4RSY 1 REMARK SEQADV LINK REVDAT 1 02-DEC-15 4RSY 0 JRNL AUTH P.OUYANG,W.LU,K.CUI,J.HUANG JRNL TITL STRUCTURE OF HUMAN LEUKOTRIENE A4 HYDROLASE IN COMPLEX WITH JRNL TITL 2 INHIBITOR H1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 47317 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2532 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.93 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3397 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 195 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4853 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 156 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.169 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.714 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5016 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4752 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6810 ; 1.812 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10972 ; 0.899 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 606 ; 6.567 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 222 ;34.263 ;24.414 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 856 ;14.904 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;16.420 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 754 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5611 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1136 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2431 ; 1.709 ; 1.983 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2426 ; 1.689 ; 1.974 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3032 ; 2.281 ; 2.955 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3033 ; 2.281 ; 2.956 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2585 ; 2.446 ; 2.240 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2586 ; 2.446 ; 2.240 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3779 ; 3.624 ; 3.263 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5856 ; 7.880 ;16.185 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5857 ; 7.879 ;16.185 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RSY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000087756. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47318 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 27.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG 8000, 100MM IMIDAZOLE PH 6.0 REMARK 280 -6.8, 100MM NA ACETATE, 5MM YBCL3, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.48050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.10350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.40150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.10350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.48050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.40150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 PRO A 1 REMARK 465 GLU A 2 REMARK 465 ILE A 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 401 O HOH A 865 1.84 REMARK 500 YB YB A 703 O HOH A 923 1.96 REMARK 500 O HOH A 807 O HOH A 928 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 182 NH1 ARG A 586 3454 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 17 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 426 CB - CG - OD1 ANGL. DEV. = -8.5 DEGREES REMARK 500 ASP A 426 CB - CG - OD2 ANGL. DEV. = 9.1 DEGREES REMARK 500 ASP A 443 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 481 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 GLU A 522 OE1 - CD - OE2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ARG A 586 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 67 56.14 34.52 REMARK 500 GLN A 79 61.48 -114.98 REMARK 500 SER A 80 -131.81 60.32 REMARK 500 ASN A 97 -9.69 83.63 REMARK 500 LYS A 126 -2.48 69.05 REMARK 500 ASP A 183 100.08 -162.38 REMARK 500 GLU A 271 44.87 -86.11 REMARK 500 CYS A 274 -10.81 71.39 REMARK 500 LEU A 275 79.46 -151.79 REMARK 500 ASP A 286 13.60 -140.29 REMARK 500 TRP A 301 -65.32 -106.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB A 703 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 47 OD2 REMARK 620 2 ASP A 47 OD1 51.7 REMARK 620 3 ACY A 704 OXT 71.9 118.6 REMARK 620 4 ACY A 704 O 78.9 124.8 50.8 REMARK 620 5 HOH A 924 O 136.6 143.2 68.2 88.6 REMARK 620 6 HOH A 925 O 127.6 75.9 149.2 145.3 84.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 299 NE2 REMARK 620 2 GLU A 318 OE1 94.9 REMARK 620 3 B3N A 701 O2 156.7 93.7 REMARK 620 4 B3N A 701 O4 87.1 172.5 81.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B3N A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YB A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 705 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4R7L RELATED DB: PDB DBREF 4RSY A 0 610 UNP P09960 LKHA4_HUMAN 1 611 SEQADV 4RSY MET A -20 UNP P09960 EXPRESSION TAG SEQADV 4RSY GLY A -19 UNP P09960 EXPRESSION TAG SEQADV 4RSY SER A -18 UNP P09960 EXPRESSION TAG SEQADV 4RSY SER A -17 UNP P09960 EXPRESSION TAG SEQADV 4RSY HIS A -16 UNP P09960 EXPRESSION TAG SEQADV 4RSY HIS A -15 UNP P09960 EXPRESSION TAG SEQADV 4RSY HIS A -14 UNP P09960 EXPRESSION TAG SEQADV 4RSY HIS A -13 UNP P09960 EXPRESSION TAG SEQADV 4RSY HIS A -12 UNP P09960 EXPRESSION TAG SEQADV 4RSY HIS A -11 UNP P09960 EXPRESSION TAG SEQADV 4RSY SER A -10 UNP P09960 EXPRESSION TAG SEQADV 4RSY SER A -9 UNP P09960 EXPRESSION TAG SEQADV 4RSY GLY A -8 UNP P09960 EXPRESSION TAG SEQADV 4RSY LEU A -7 UNP P09960 EXPRESSION TAG SEQADV 4RSY VAL A -6 UNP P09960 EXPRESSION TAG SEQADV 4RSY PRO A -5 UNP P09960 EXPRESSION TAG SEQADV 4RSY ARG A -4 UNP P09960 EXPRESSION TAG SEQADV 4RSY GLY A -3 UNP P09960 EXPRESSION TAG SEQADV 4RSY SER A -2 UNP P09960 EXPRESSION TAG SEQADV 4RSY HIS A -1 UNP P09960 EXPRESSION TAG SEQRES 1 A 631 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 631 LEU VAL PRO ARG GLY SER HIS MET PRO GLU ILE VAL ASP SEQRES 3 A 631 THR CYS SER LEU ALA SER PRO ALA SER VAL CYS ARG THR SEQRES 4 A 631 LYS HIS LEU HIS LEU ARG CYS SER VAL ASP PHE THR ARG SEQRES 5 A 631 ARG THR LEU THR GLY THR ALA ALA LEU THR VAL GLN SER SEQRES 6 A 631 GLN GLU ASP ASN LEU ARG SER LEU VAL LEU ASP THR LYS SEQRES 7 A 631 ASP LEU THR ILE GLU LYS VAL VAL ILE ASN GLY GLN GLU SEQRES 8 A 631 VAL LYS TYR ALA LEU GLY GLU ARG GLN SER TYR LYS GLY SEQRES 9 A 631 SER PRO MET GLU ILE SER LEU PRO ILE ALA LEU SER LYS SEQRES 10 A 631 ASN GLN GLU ILE VAL ILE GLU ILE SER PHE GLU THR SER SEQRES 11 A 631 PRO LYS SER SER ALA LEU GLN TRP LEU THR PRO GLU GLN SEQRES 12 A 631 THR SER GLY LYS GLU HIS PRO TYR LEU PHE SER GLN CYS SEQRES 13 A 631 GLN ALA ILE HIS CYS ARG ALA ILE LEU PRO CYS GLN ASP SEQRES 14 A 631 THR PRO SER VAL LYS LEU THR TYR THR ALA GLU VAL SER SEQRES 15 A 631 VAL PRO LYS GLU LEU VAL ALA LEU MET SER ALA ILE ARG SEQRES 16 A 631 ASP GLY GLU THR PRO ASP PRO GLU ASP PRO SER ARG LYS SEQRES 17 A 631 ILE TYR LYS PHE ILE GLN LYS VAL PRO ILE PRO CYS TYR SEQRES 18 A 631 LEU ILE ALA LEU VAL VAL GLY ALA LEU GLU SER ARG GLN SEQRES 19 A 631 ILE GLY PRO ARG THR LEU VAL TRP SER GLU LYS GLU GLN SEQRES 20 A 631 VAL GLU LYS SER ALA TYR GLU PHE SER GLU THR GLU SER SEQRES 21 A 631 MET LEU LYS ILE ALA GLU ASP LEU GLY GLY PRO TYR VAL SEQRES 22 A 631 TRP GLY GLN TYR ASP LEU LEU VAL LEU PRO PRO SER PHE SEQRES 23 A 631 PRO TYR GLY GLY MET GLU ASN PRO CYS LEU THR PHE VAL SEQRES 24 A 631 THR PRO THR LEU LEU ALA GLY ASP LYS SER LEU SER ASN SEQRES 25 A 631 VAL ILE ALA HIS GLU ILE SER HIS SER TRP THR GLY ASN SEQRES 26 A 631 LEU VAL THR ASN LYS THR TRP ASP HIS PHE TRP LEU ASN SEQRES 27 A 631 GLU GLY HIS THR VAL TYR LEU GLU ARG HIS ILE CYS GLY SEQRES 28 A 631 ARG LEU PHE GLY GLU LYS PHE ARG HIS PHE ASN ALA LEU SEQRES 29 A 631 GLY GLY TRP GLY GLU LEU GLN ASN SER VAL LYS THR PHE SEQRES 30 A 631 GLY GLU THR HIS PRO PHE THR LYS LEU VAL VAL ASP LEU SEQRES 31 A 631 THR ASP ILE ASP PRO ASP VAL ALA TYR SER SER VAL PRO SEQRES 32 A 631 TYR GLU LYS GLY PHE ALA LEU LEU PHE TYR LEU GLU GLN SEQRES 33 A 631 LEU LEU GLY GLY PRO GLU ILE PHE LEU GLY PHE LEU LYS SEQRES 34 A 631 ALA TYR VAL GLU LYS PHE SER TYR LYS SER ILE THR THR SEQRES 35 A 631 ASP ASP TRP LYS ASP PHE LEU TYR SER TYR PHE LYS ASP SEQRES 36 A 631 LYS VAL ASP VAL LEU ASN GLN VAL ASP TRP ASN ALA TRP SEQRES 37 A 631 LEU TYR SER PRO GLY LEU PRO PRO ILE LYS PRO ASN TYR SEQRES 38 A 631 ASP MET THR LEU THR ASN ALA CYS ILE ALA LEU SER GLN SEQRES 39 A 631 ARG TRP ILE THR ALA LYS GLU ASP ASP LEU ASN SER PHE SEQRES 40 A 631 ASN ALA THR ASP LEU LYS ASP LEU SER SER HIS GLN LEU SEQRES 41 A 631 ASN GLU PHE LEU ALA GLN THR LEU GLN ARG ALA PRO LEU SEQRES 42 A 631 PRO LEU GLY HIS ILE LYS ARG MET GLN GLU VAL TYR ASN SEQRES 43 A 631 PHE ASN ALA ILE ASN ASN SER GLU ILE ARG PHE ARG TRP SEQRES 44 A 631 LEU ARG LEU CYS ILE GLN SER LYS TRP GLU ASP ALA ILE SEQRES 45 A 631 PRO LEU ALA LEU LYS MET ALA THR GLU GLN GLY ARG MET SEQRES 46 A 631 LYS PHE THR ARG PRO LEU PHE LYS ASP LEU ALA ALA PHE SEQRES 47 A 631 ASP LYS SER HIS ASP GLN ALA VAL ARG THR TYR GLN GLU SEQRES 48 A 631 HIS LYS ALA SER MET HIS PRO VAL THR ALA MET LEU VAL SEQRES 49 A 631 GLY LYS ASP LEU LYS VAL ASP HET B3N A 701 22 HET ZN A 702 1 HET YB A 703 1 HET ACY A 704 4 HET IMD A 705 5 HETNAM B3N 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMINO)-7- HETNAM 2 B3N OXOHEPTYL]BENZAMIDE HETNAM ZN ZINC ION HETNAM YB YTTERBIUM (III) ION HETNAM ACY ACETIC ACID HETNAM IMD IMIDAZOLE HETSYN B3N M344 FORMUL 2 B3N C16 H25 N3 O3 FORMUL 3 ZN ZN 2+ FORMUL 4 YB YB 3+ FORMUL 5 ACY C2 H4 O2 FORMUL 6 IMD C3 H5 N2 1+ FORMUL 7 HOH *156(H2 O) HELIX 1 1 GLN A 79 GLY A 83 5 5 HELIX 2 2 THR A 119 THR A 123 5 5 HELIX 3 3 HIS A 139 ILE A 143 5 5 HELIX 4 4 PRO A 198 ILE A 202 5 5 HELIX 5 5 GLU A 223 GLU A 225 5 3 HELIX 6 6 GLN A 226 PHE A 234 1 9 HELIX 7 7 GLU A 236 GLY A 249 1 14 HELIX 8 8 PRO A 280 LEU A 283 5 4 HELIX 9 9 SER A 290 SER A 300 1 11 HELIX 10 10 THR A 310 ASP A 312 5 3 HELIX 11 11 HIS A 313 GLY A 334 1 22 HELIX 12 12 GLY A 334 GLY A 357 1 24 HELIX 13 13 HIS A 360 LYS A 364 5 5 HELIX 14 14 ASP A 373 TYR A 378 1 6 HELIX 15 15 SER A 380 LEU A 397 1 18 HELIX 16 16 GLY A 399 SER A 415 1 17 HELIX 17 17 THR A 420 PHE A 432 1 13 HELIX 18 18 LYS A 435 ASN A 440 1 6 HELIX 19 19 ASP A 443 SER A 450 1 8 HELIX 20 20 THR A 465 ALA A 478 1 14 HELIX 21 21 LYS A 479 PHE A 486 5 8 HELIX 22 22 ASN A 487 LYS A 492 5 6 HELIX 23 23 SER A 495 ARG A 509 1 15 HELIX 24 24 PRO A 513 ASN A 525 1 13 HELIX 25 25 PHE A 526 ILE A 529 5 4 HELIX 26 26 ASN A 531 SER A 545 1 15 HELIX 27 27 TRP A 547 ASP A 549 5 3 HELIX 28 28 ALA A 550 GLN A 561 1 12 HELIX 29 29 ARG A 563 PHE A 577 1 15 HELIX 30 30 SER A 580 LYS A 592 1 13 HELIX 31 31 ALA A 593 MET A 595 5 3 HELIX 32 32 HIS A 596 LEU A 607 1 12 SHEET 1 A 8 GLN A 69 GLU A 70 0 SHEET 2 A 8 LEU A 59 ILE A 66 -1 N ILE A 66 O GLN A 69 SHEET 3 A 8 GLU A 99 THR A 108 -1 O GLU A 103 N VAL A 65 SHEET 4 A 8 THR A 33 SER A 44 -1 N VAL A 42 O ILE A 100 SHEET 5 A 8 CYS A 16 ASP A 28 -1 N LYS A 19 O THR A 41 SHEET 6 A 8 LEU A 154 PRO A 163 1 O THR A 157 N LEU A 21 SHEET 7 A 8 ASP A 183 ILE A 197 -1 O GLN A 193 N TYR A 156 SHEET 8 A 8 ILE A 173 ASP A 180 -1 N THR A 178 O ILE A 188 SHEET 1 B 3 LEU A 49 LEU A 54 0 SHEET 2 B 3 MET A 86 LEU A 94 -1 O ILE A 88 N LEU A 52 SHEET 3 B 3 TYR A 73 LEU A 75 -1 N ALA A 74 O GLU A 87 SHEET 1 C 4 LEU A 115 LEU A 118 0 SHEET 2 C 4 TYR A 130 SER A 133 -1 O TYR A 130 N LEU A 118 SHEET 3 C 4 LEU A 204 GLY A 207 -1 O VAL A 206 N LEU A 131 SHEET 4 C 4 VAL A 167 MET A 170 -1 N LEU A 169 O VAL A 205 SHEET 1 D 5 GLU A 210 GLY A 215 0 SHEET 2 D 5 THR A 218 SER A 222 -1 O SER A 222 N GLU A 210 SHEET 3 D 5 ASP A 257 VAL A 260 1 O VAL A 260 N TRP A 221 SHEET 4 D 5 LEU A 275 VAL A 278 1 O VAL A 278 N LEU A 259 SHEET 5 D 5 GLY A 269 MET A 270 -1 N MET A 270 O PHE A 277 SHEET 1 E 2 VAL A 306 ASN A 308 0 SHEET 2 E 2 LYS A 417 ILE A 419 1 O ILE A 419 N THR A 307 LINK OD2 ASP A 47 YB YB A 703 1555 1555 2.43 LINK OD1 ASP A 47 YB YB A 703 1555 1555 2.47 LINK NE2 HIS A 299 ZN ZN A 702 1555 1555 2.15 LINK OE1 GLU A 318 ZN ZN A 702 1555 1555 2.11 LINK O2 B3N A 701 ZN ZN A 702 1555 1555 1.95 LINK O4 B3N A 701 ZN ZN A 702 1555 1555 2.04 LINK YB YB A 703 OXT ACY A 704 1555 1555 2.63 LINK YB YB A 703 O ACY A 704 1555 1555 2.46 LINK YB YB A 703 O HOH A 924 1555 1555 2.52 LINK YB YB A 703 O HOH A 925 1555 1555 2.40 CISPEP 1 GLN A 136 ALA A 137 0 0.76 CISPEP 2 ALA A 510 PRO A 511 0 -2.51 SITE 1 AC1 17 GLN A 136 ALA A 137 GLY A 269 GLU A 271 SITE 2 AC1 17 HIS A 295 GLU A 296 HIS A 299 TRP A 311 SITE 3 AC1 17 PHE A 314 GLU A 318 VAL A 367 PRO A 374 SITE 4 AC1 17 ALA A 377 TYR A 378 TYR A 383 ZN A 702 SITE 5 AC1 17 HOH A 897 SITE 1 AC2 4 HIS A 295 HIS A 299 GLU A 318 B3N A 701 SITE 1 AC3 6 ASP A 47 ASP A 481 ACY A 704 HOH A 923 SITE 2 AC3 6 HOH A 924 HOH A 925 SITE 1 AC4 8 ASP A 47 ARG A 174 LYS A 479 ASP A 481 SITE 2 AC4 8 YB A 703 HOH A 813 HOH A 923 HOH A 924 SITE 1 AC5 6 GLY A 344 GLY A 347 GLU A 348 GLU A 501 SITE 2 AC5 6 ALA A 504 GLN A 508 CRYST1 76.961 86.803 98.207 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012994 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011520 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010183 0.00000