HEADER PROTEIN BINDING 12-NOV-14 4RT4 TITLE CRYSTAL STRUCTURE OF DPY30 COMPLEXED WITH BRE2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN DPY-30 HOMOLOG; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: C TERMINAL DOMAIN, UNP RESIDUES 41-99; COMPND 5 SYNONYM: DPY-30-LIKE PROTEIN, DPY-30L; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PEPTIDE FROM COMPASS COMPONENT BRE2; COMPND 9 CHAIN: E; COMPND 10 SYNONYM: BREFELDIN-A SENSITIVITY PROTEIN 2, COMPLEX PROTEINS COMPND 11 ASSOCIATED WITH SET1 PROTEIN BRE2, SET1C COMPONENT BRE2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DPY30; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 14 ORGANISM_COMMON: YEAST; SOURCE 15 ORGANISM_TAXID: 559292 KEYWDS X-TYPE HELIX, H3K4 METHYLATION, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR H.M.ZHANG,M.LI,W.R.CHANG REVDAT 4 08-NOV-23 4RT4 1 REMARK REVDAT 3 25-DEC-19 4RT4 1 REMARK SEQADV REVDAT 2 16-OCT-19 4RT4 1 REMARK REVDAT 1 07-OCT-15 4RT4 0 JRNL AUTH H.ZHANG,M.LI,Y.GAO,C.JIA,X.PAN,P.CAO,X.ZHAO,J.ZHANG,W.CHANG JRNL TITL STRUCTURAL IMPLICATIONS OF DPY30 OLIGOMERIZATION FOR JRNL TITL 2 MLL/SET1 COMPASS H3K4 TRIMETHYLATION JRNL REF PROTEIN CELL V. 6 147 2015 JRNL REFN ISSN 1674-800X JRNL PMID 25542209 JRNL DOI 10.1007/S13238-014-0127-Z REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 22964 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1179 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.4453 - 3.9933 0.99 2756 138 0.1704 0.2491 REMARK 3 2 3.9933 - 3.1703 1.00 2735 139 0.1679 0.1889 REMARK 3 3 3.1703 - 2.7697 1.00 2717 152 0.1794 0.2217 REMARK 3 4 2.7697 - 2.5165 1.00 2739 147 0.1889 0.2080 REMARK 3 5 2.5165 - 2.3362 1.00 2710 168 0.1889 0.2348 REMARK 3 6 2.3362 - 2.1985 1.00 2691 159 0.2038 0.2191 REMARK 3 7 2.1985 - 2.0884 1.00 2723 120 0.2067 0.2410 REMARK 3 8 2.0884 - 1.9975 1.00 2714 156 0.2417 0.2662 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1970 REMARK 3 ANGLE : 1.043 2698 REMARK 3 CHIRALITY : 0.046 317 REMARK 3 PLANARITY : 0.006 354 REMARK 3 DIHEDRAL : 15.728 773 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7061 -52.2318 14.5507 REMARK 3 T TENSOR REMARK 3 T11: 0.3774 T22: 0.2575 REMARK 3 T33: 0.4054 T12: 0.0367 REMARK 3 T13: 0.0943 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 2.1758 L22: 8.7204 REMARK 3 L33: 8.8284 L12: 2.7242 REMARK 3 L13: -0.4962 L23: 1.8302 REMARK 3 S TENSOR REMARK 3 S11: 0.0110 S12: 0.1959 S13: -0.8636 REMARK 3 S21: -0.3028 S22: -0.2629 S23: -0.7897 REMARK 3 S31: 0.7040 S32: 0.1047 S33: 0.1642 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5845 -33.4591 21.0561 REMARK 3 T TENSOR REMARK 3 T11: 0.2605 T22: 0.2404 REMARK 3 T33: 0.2912 T12: -0.0388 REMARK 3 T13: -0.0229 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 2.8849 L22: 2.3984 REMARK 3 L33: 3.0088 L12: 0.2993 REMARK 3 L13: 0.5381 L23: -0.6586 REMARK 3 S TENSOR REMARK 3 S11: -0.0034 S12: -0.3198 S13: 0.4950 REMARK 3 S21: 0.2636 S22: -0.1847 S23: -0.2645 REMARK 3 S31: -0.1600 S32: 0.0669 S33: 0.1687 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 47 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5726 -28.6888 15.3795 REMARK 3 T TENSOR REMARK 3 T11: 0.3049 T22: 0.3256 REMARK 3 T33: 0.3946 T12: 0.0544 REMARK 3 T13: -0.0075 T23: -0.0873 REMARK 3 L TENSOR REMARK 3 L11: 8.1556 L22: 2.7534 REMARK 3 L33: 7.2456 L12: -1.9814 REMARK 3 L13: -1.4700 L23: 0.1053 REMARK 3 S TENSOR REMARK 3 S11: -0.2534 S12: -0.2372 S13: 1.0865 REMARK 3 S21: 0.4860 S22: 0.0621 S23: 0.2612 REMARK 3 S31: -0.3238 S32: -0.6365 S33: 0.1082 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 62 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4002 -42.5013 8.5783 REMARK 3 T TENSOR REMARK 3 T11: 0.2265 T22: 0.3018 REMARK 3 T33: 0.3042 T12: 0.0061 REMARK 3 T13: 0.0357 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 3.0583 L22: 3.6209 REMARK 3 L33: 1.7686 L12: -1.7387 REMARK 3 L13: -0.0783 L23: -0.9633 REMARK 3 S TENSOR REMARK 3 S11: -0.0981 S12: 0.4185 S13: 0.0397 REMARK 3 S21: -0.2837 S22: -0.1694 S23: -0.5090 REMARK 3 S31: 0.3106 S32: 0.1170 S33: 0.2074 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 80 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6489 -34.1154 8.9556 REMARK 3 T TENSOR REMARK 3 T11: 0.2286 T22: 0.3138 REMARK 3 T33: 0.3387 T12: -0.0376 REMARK 3 T13: 0.0289 T23: 0.0340 REMARK 3 L TENSOR REMARK 3 L11: 4.2001 L22: 4.5789 REMARK 3 L33: 5.5640 L12: -0.5665 REMARK 3 L13: 1.4636 L23: -2.4522 REMARK 3 S TENSOR REMARK 3 S11: -0.1477 S12: 0.5433 S13: 0.1512 REMARK 3 S21: -0.0801 S22: 0.1516 S23: 0.0033 REMARK 3 S31: -0.2734 S32: 0.0483 S33: -0.0089 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 47 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2798 -47.7971 35.7542 REMARK 3 T TENSOR REMARK 3 T11: 0.3104 T22: 0.2373 REMARK 3 T33: 0.1537 T12: 0.0274 REMARK 3 T13: -0.0407 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 6.0155 L22: 3.7713 REMARK 3 L33: 4.1037 L12: 0.1474 REMARK 3 L13: -0.3209 L23: 0.2605 REMARK 3 S TENSOR REMARK 3 S11: -0.0321 S12: -0.1937 S13: 0.0123 REMARK 3 S21: 0.1414 S22: -0.1280 S23: 0.2044 REMARK 3 S31: -0.2599 S32: -0.2122 S33: 0.1633 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 80 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2970 -56.8974 39.2979 REMARK 3 T TENSOR REMARK 3 T11: 0.3141 T22: 0.2501 REMARK 3 T33: 0.2850 T12: -0.0049 REMARK 3 T13: 0.0091 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 3.6340 L22: 3.2698 REMARK 3 L33: 6.2107 L12: -1.2415 REMARK 3 L13: -2.1956 L23: 0.7147 REMARK 3 S TENSOR REMARK 3 S11: -0.1393 S12: -0.0485 S13: -0.2213 REMARK 3 S21: 0.1739 S22: 0.1328 S23: 0.3694 REMARK 3 S31: 0.3560 S32: -0.3578 S33: -0.0199 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 47 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2622 -47.7694 29.3190 REMARK 3 T TENSOR REMARK 3 T11: 0.2790 T22: 0.1877 REMARK 3 T33: 0.1609 T12: -0.0115 REMARK 3 T13: -0.0451 T23: 0.0436 REMARK 3 L TENSOR REMARK 3 L11: 6.7212 L22: 3.8708 REMARK 3 L33: 4.1898 L12: 0.6800 REMARK 3 L13: -0.1101 L23: 0.7319 REMARK 3 S TENSOR REMARK 3 S11: -0.2026 S12: 0.1493 S13: -0.0200 REMARK 3 S21: -0.1592 S22: 0.0374 S23: -0.1939 REMARK 3 S31: -0.2921 S32: 0.2405 S33: 0.0960 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 80 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2430 -56.8921 25.8221 REMARK 3 T TENSOR REMARK 3 T11: 0.3131 T22: 0.2371 REMARK 3 T33: 0.2592 T12: 0.0059 REMARK 3 T13: 0.0128 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 4.4312 L22: 3.3973 REMARK 3 L33: 6.3205 L12: 1.8953 REMARK 3 L13: -3.0233 L23: -1.0816 REMARK 3 S TENSOR REMARK 3 S11: -0.2603 S12: 0.0739 S13: -0.4874 REMARK 3 S21: -0.2130 S22: -0.0995 S23: -0.3818 REMARK 3 S31: 0.3533 S32: 0.1731 S33: 0.2513 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 480 THROUGH 500 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2947 -43.1600 15.6554 REMARK 3 T TENSOR REMARK 3 T11: 0.5146 T22: 0.5566 REMARK 3 T33: 0.6938 T12: -0.0899 REMARK 3 T13: -0.1174 T23: 0.2591 REMARK 3 L TENSOR REMARK 3 L11: 5.0348 L22: 3.1357 REMARK 3 L33: 3.6332 L12: 0.0533 REMARK 3 L13: 0.1594 L23: -2.2892 REMARK 3 S TENSOR REMARK 3 S11: 0.2088 S12: 0.5303 S13: -0.2015 REMARK 3 S21: 0.3242 S22: -0.4997 S23: 0.6869 REMARK 3 S31: -0.1601 S32: -1.3832 S33: 0.1469 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RT4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000087762. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : PH8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23016 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.997 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.30 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : 0.05100 REMARK 200 FOR THE DATA SET : 35.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.30 REMARK 200 R MERGE FOR SHELL (I) : 0.39600 REMARK 200 R SYM FOR SHELL (I) : 0.92300 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3G36 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL, PH 8.5, 2.0M NH4H2PO4, REMARK 280 EVAPORATION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.25267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.50533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.87900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 88.13167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 17.62633 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 41 REMARK 465 SER A 42 REMARK 465 LYS A 43 REMARK 465 GLN A 44 REMARK 465 LYS A 45 REMARK 465 VAL A 46 REMARK 465 ASP A 97 REMARK 465 ARG A 98 REMARK 465 ASN A 99 REMARK 465 LEU A 100 REMARK 465 GLU A 101 REMARK 465 ARG A 102 REMARK 465 PRO A 103 REMARK 465 HIS A 104 REMARK 465 ARG A 105 REMARK 465 ASP A 106 REMARK 465 SER B 41 REMARK 465 SER B 42 REMARK 465 LYS B 43 REMARK 465 GLN B 44 REMARK 465 LYS B 45 REMARK 465 VAL B 46 REMARK 465 ASP B 97 REMARK 465 ARG B 98 REMARK 465 ASN B 99 REMARK 465 LEU B 100 REMARK 465 GLU B 101 REMARK 465 ARG B 102 REMARK 465 PRO B 103 REMARK 465 HIS B 104 REMARK 465 ARG B 105 REMARK 465 ASP B 106 REMARK 465 SER C 41 REMARK 465 SER C 42 REMARK 465 LYS C 43 REMARK 465 GLN C 44 REMARK 465 LYS C 45 REMARK 465 VAL C 46 REMARK 465 ASN C 99 REMARK 465 LEU C 100 REMARK 465 GLU C 101 REMARK 465 ARG C 102 REMARK 465 PRO C 103 REMARK 465 HIS C 104 REMARK 465 ARG C 105 REMARK 465 ASP C 106 REMARK 465 SER D 41 REMARK 465 SER D 42 REMARK 465 LYS D 43 REMARK 465 GLN D 44 REMARK 465 LYS D 45 REMARK 465 VAL D 46 REMARK 465 ASN D 99 REMARK 465 LEU D 100 REMARK 465 GLU D 101 REMARK 465 ARG D 102 REMARK 465 PRO D 103 REMARK 465 HIS D 104 REMARK 465 ARG D 105 REMARK 465 ASP D 106 REMARK 465 ASN E 475 REMARK 465 THR E 476 REMARK 465 LEU E 477 REMARK 465 ASP E 478 REMARK 465 THR E 479 REMARK 465 ALA E 501 REMARK 465 LEU E 502 REMARK 465 GLN E 503 REMARK 465 GLN E 504 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU E 480 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 203 O HOH B 235 1.91 REMARK 500 O HOH D 206 O HOH D 239 1.92 REMARK 500 O HOH A 221 O HOH B 231 1.95 REMARK 500 O HOH C 212 O HOH C 245 2.02 REMARK 500 O HOH C 215 O HOH D 212 2.08 REMARK 500 OG1 THR D 53 O HOH D 230 2.14 REMARK 500 O HOH E 603 O HOH E 604 2.15 REMARK 500 OH TYR D 87 O HOH D 206 2.17 REMARK 500 O HOH C 241 O HOH C 251 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 220 O HOH C 215 5654 1.99 REMARK 500 O HOH A 203 O HOH C 212 5654 2.02 REMARK 500 O HOH A 218 O HOH C 211 5654 2.04 REMARK 500 O HOH A 219 O HOH D 212 5654 2.17 REMARK 500 O HOH B 245 O HOH D 238 5654 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 60 -58.67 -120.31 REMARK 500 ASP D 97 49.28 -105.34 REMARK 500 REMARK 500 REMARK: NULL DBREF 4RT4 A 41 99 UNP Q9C005 DPY30_HUMAN 41 99 DBREF 4RT4 B 41 99 UNP Q9C005 DPY30_HUMAN 41 99 DBREF 4RT4 C 41 99 UNP Q9C005 DPY30_HUMAN 41 99 DBREF 4RT4 D 41 99 UNP Q9C005 DPY30_HUMAN 41 99 DBREF 4RT4 E 475 504 UNP P43132 BRE2_YEAST 476 505 SEQADV 4RT4 LEU A 100 UNP Q9C005 EXPRESSION TAG SEQADV 4RT4 GLU A 101 UNP Q9C005 EXPRESSION TAG SEQADV 4RT4 ARG A 102 UNP Q9C005 EXPRESSION TAG SEQADV 4RT4 PRO A 103 UNP Q9C005 EXPRESSION TAG SEQADV 4RT4 HIS A 104 UNP Q9C005 EXPRESSION TAG SEQADV 4RT4 ARG A 105 UNP Q9C005 EXPRESSION TAG SEQADV 4RT4 ASP A 106 UNP Q9C005 EXPRESSION TAG SEQADV 4RT4 LEU B 100 UNP Q9C005 EXPRESSION TAG SEQADV 4RT4 GLU B 101 UNP Q9C005 EXPRESSION TAG SEQADV 4RT4 ARG B 102 UNP Q9C005 EXPRESSION TAG SEQADV 4RT4 PRO B 103 UNP Q9C005 EXPRESSION TAG SEQADV 4RT4 HIS B 104 UNP Q9C005 EXPRESSION TAG SEQADV 4RT4 ARG B 105 UNP Q9C005 EXPRESSION TAG SEQADV 4RT4 ASP B 106 UNP Q9C005 EXPRESSION TAG SEQADV 4RT4 LEU C 100 UNP Q9C005 EXPRESSION TAG SEQADV 4RT4 GLU C 101 UNP Q9C005 EXPRESSION TAG SEQADV 4RT4 ARG C 102 UNP Q9C005 EXPRESSION TAG SEQADV 4RT4 PRO C 103 UNP Q9C005 EXPRESSION TAG SEQADV 4RT4 HIS C 104 UNP Q9C005 EXPRESSION TAG SEQADV 4RT4 ARG C 105 UNP Q9C005 EXPRESSION TAG SEQADV 4RT4 ASP C 106 UNP Q9C005 EXPRESSION TAG SEQADV 4RT4 LEU D 100 UNP Q9C005 EXPRESSION TAG SEQADV 4RT4 GLU D 101 UNP Q9C005 EXPRESSION TAG SEQADV 4RT4 ARG D 102 UNP Q9C005 EXPRESSION TAG SEQADV 4RT4 PRO D 103 UNP Q9C005 EXPRESSION TAG SEQADV 4RT4 HIS D 104 UNP Q9C005 EXPRESSION TAG SEQADV 4RT4 ARG D 105 UNP Q9C005 EXPRESSION TAG SEQADV 4RT4 ASP D 106 UNP Q9C005 EXPRESSION TAG SEQRES 1 A 66 SER SER LYS GLN LYS VAL ASP LEU GLN SER LEU PRO THR SEQRES 2 A 66 ARG ALA TYR LEU ASP GLN THR VAL VAL PRO ILE LEU LEU SEQRES 3 A 66 GLN GLY LEU ALA VAL LEU ALA LYS GLU ARG PRO PRO ASN SEQRES 4 A 66 PRO ILE GLU PHE LEU ALA SER TYR LEU LEU LYS ASN LYS SEQRES 5 A 66 ALA GLN PHE GLU ASP ARG ASN LEU GLU ARG PRO HIS ARG SEQRES 6 A 66 ASP SEQRES 1 B 66 SER SER LYS GLN LYS VAL ASP LEU GLN SER LEU PRO THR SEQRES 2 B 66 ARG ALA TYR LEU ASP GLN THR VAL VAL PRO ILE LEU LEU SEQRES 3 B 66 GLN GLY LEU ALA VAL LEU ALA LYS GLU ARG PRO PRO ASN SEQRES 4 B 66 PRO ILE GLU PHE LEU ALA SER TYR LEU LEU LYS ASN LYS SEQRES 5 B 66 ALA GLN PHE GLU ASP ARG ASN LEU GLU ARG PRO HIS ARG SEQRES 6 B 66 ASP SEQRES 1 C 66 SER SER LYS GLN LYS VAL ASP LEU GLN SER LEU PRO THR SEQRES 2 C 66 ARG ALA TYR LEU ASP GLN THR VAL VAL PRO ILE LEU LEU SEQRES 3 C 66 GLN GLY LEU ALA VAL LEU ALA LYS GLU ARG PRO PRO ASN SEQRES 4 C 66 PRO ILE GLU PHE LEU ALA SER TYR LEU LEU LYS ASN LYS SEQRES 5 C 66 ALA GLN PHE GLU ASP ARG ASN LEU GLU ARG PRO HIS ARG SEQRES 6 C 66 ASP SEQRES 1 D 66 SER SER LYS GLN LYS VAL ASP LEU GLN SER LEU PRO THR SEQRES 2 D 66 ARG ALA TYR LEU ASP GLN THR VAL VAL PRO ILE LEU LEU SEQRES 3 D 66 GLN GLY LEU ALA VAL LEU ALA LYS GLU ARG PRO PRO ASN SEQRES 4 D 66 PRO ILE GLU PHE LEU ALA SER TYR LEU LEU LYS ASN LYS SEQRES 5 D 66 ALA GLN PHE GLU ASP ARG ASN LEU GLU ARG PRO HIS ARG SEQRES 6 D 66 ASP SEQRES 1 E 30 ASN THR LEU ASP THR LEU TYR LYS GLU GLN ILE ALA GLU SEQRES 2 E 30 ASP ILE VAL TRP ASP ILE ILE ASP GLU LEU GLU GLN ILE SEQRES 3 E 30 ALA LEU GLN GLN FORMUL 6 HOH *173(H2 O) HELIX 1 1 ASP A 47 LEU A 51 5 5 HELIX 2 2 PRO A 52 GLN A 59 1 8 HELIX 3 3 VAL A 61 ARG A 76 1 16 HELIX 4 4 ASN A 79 LYS A 92 1 14 HELIX 5 5 ALA A 93 PHE A 95 5 3 HELIX 6 6 ASP B 47 LEU B 51 5 5 HELIX 7 7 PRO B 52 GLN B 59 1 8 HELIX 8 8 VAL B 61 ARG B 76 1 16 HELIX 9 9 ASN B 79 LYS B 92 1 14 HELIX 10 10 ALA B 93 PHE B 95 5 3 HELIX 11 11 ASP C 47 LEU C 51 5 5 HELIX 12 12 PRO C 52 VAL C 61 1 10 HELIX 13 13 VAL C 61 ARG C 76 1 16 HELIX 14 14 ASN C 79 GLU C 96 1 18 HELIX 15 15 ASP D 47 LEU D 51 5 5 HELIX 16 16 PRO D 52 VAL D 61 1 10 HELIX 17 17 VAL D 61 ARG D 76 1 16 HELIX 18 18 ASN D 79 GLU D 96 1 18 HELIX 19 19 TYR E 481 ILE E 500 1 20 CRYST1 75.229 75.229 105.758 90.00 90.00 120.00 P 61 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013293 0.007675 0.000000 0.00000 SCALE2 0.000000 0.015349 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009456 0.00000