HEADER TRANSFERASE/DNA 15-NOV-14 4RTL TITLE COMPLEX OF ESCHERICHIA COLI DNA ADENINE METHYLTRANSFERASE (DAM) WITH TITLE 2 SINEFUNGIN AND WITH DNA CONTAINING DISTAL PAP REGULON SEQUENCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA ADENINE METHYLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*TP*CP*TP*AP*AP*AP*GP*AP*TP*CP*G)-3'); COMPND 7 CHAIN: F; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (5'-D(*AP*CP*GP*AP*TP*CP*TP*TP*TP*AP*G)-3'); COMPND 11 CHAIN: G; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 1110693; SOURCE 4 STRAIN: K-12 SUBSTR. MDS42; SOURCE 5 GENE: DAM, ECMDS42_2833; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HMS174(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630 KEYWDS DAM METHYLATION, GATC RECOGNITION, BASE FLIPPING, BACTERIAL KEYWDS 2 VIRULENCE, METHYLATION-INDEPENDENT TRANSCRIPTIONAL REPRESSOR, KEYWDS 3 TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.R.HORTON,X.CHENG REVDAT 4 20-SEP-23 4RTL 1 REMARK SEQADV REVDAT 3 20-MAY-15 4RTL 1 JRNL REVDAT 2 22-APR-15 4RTL 1 JRNL REVDAT 1 15-APR-15 4RTL 0 JRNL AUTH J.R.HORTON,X.ZHANG,R.M.BLUMENTHAL,X.CHENG JRNL TITL STRUCTURES OF ESCHERICHIA COLI DNA ADENINE METHYLTRANSFERASE JRNL TITL 2 (DAM) IN COMPLEX WITH A NON-GATC SEQUENCE: POTENTIAL JRNL TITL 3 IMPLICATIONS FOR METHYLATION-INDEPENDENT TRANSCRIPTIONAL JRNL TITL 4 REPRESSION. JRNL REF NUCLEIC ACIDS RES. V. 43 4296 2015 JRNL REFN ISSN 0305-1048 JRNL PMID 25845600 JRNL DOI 10.1093/NAR/GKV251 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 20061 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1003 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.6085 - 4.1910 0.99 2889 151 0.1619 0.1955 REMARK 3 2 4.1910 - 3.3284 1.00 2777 147 0.1822 0.2211 REMARK 3 3 3.3284 - 2.9082 1.00 2745 145 0.2554 0.3097 REMARK 3 4 2.9082 - 2.6425 0.99 2711 142 0.2558 0.3394 REMARK 3 5 2.6425 - 2.4532 0.99 2671 141 0.2477 0.3282 REMARK 3 6 2.4532 - 2.3087 0.98 2659 139 0.2411 0.3017 REMARK 3 7 2.3087 - 2.1930 0.97 2606 138 0.2437 0.3091 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2627 REMARK 3 ANGLE : 1.079 3665 REMARK 3 CHIRALITY : 0.048 394 REMARK 3 PLANARITY : 0.005 400 REMARK 3 DIHEDRAL : 18.615 966 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 3:56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6399 -6.1194 168.8400 REMARK 3 T TENSOR REMARK 3 T11: 0.3042 T22: 0.3607 REMARK 3 T33: 0.3173 T12: -0.0465 REMARK 3 T13: -0.1017 T23: 0.0580 REMARK 3 L TENSOR REMARK 3 L11: 4.2601 L22: 3.3955 REMARK 3 L33: 4.1314 L12: 0.2120 REMARK 3 L13: 0.9488 L23: 1.3384 REMARK 3 S TENSOR REMARK 3 S11: 0.0987 S12: 0.1922 S13: -0.2201 REMARK 3 S21: -0.2074 S22: -0.0351 S23: 0.5629 REMARK 3 S31: 0.3655 S32: -0.7719 S33: -0.0343 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 57:162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0552 7.2745 182.8173 REMARK 3 T TENSOR REMARK 3 T11: 0.2129 T22: 0.2594 REMARK 3 T33: 0.1988 T12: 0.0628 REMARK 3 T13: -0.0043 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 2.2398 L22: 4.0826 REMARK 3 L33: 2.7163 L12: 0.8803 REMARK 3 L13: 0.6545 L23: -0.8212 REMARK 3 S TENSOR REMARK 3 S11: -0.0217 S12: -0.2405 S13: 0.0343 REMARK 3 S21: 0.2683 S22: 0.1370 S23: 0.3011 REMARK 3 S31: -0.1399 S32: -0.3009 S33: -0.1118 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 163:271 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7295 -7.7479 156.5714 REMARK 3 T TENSOR REMARK 3 T11: 0.5160 T22: 0.4684 REMARK 3 T33: 0.2940 T12: 0.1363 REMARK 3 T13: -0.0476 T23: -0.0649 REMARK 3 L TENSOR REMARK 3 L11: 4.4925 L22: 4.3450 REMARK 3 L33: 4.9213 L12: -0.6591 REMARK 3 L13: 0.4602 L23: -0.4390 REMARK 3 S TENSOR REMARK 3 S11: 0.4432 S12: 0.9002 S13: -0.2824 REMARK 3 S21: -0.7639 S22: -0.1998 S23: 0.0355 REMARK 3 S31: 0.6421 S32: 0.3492 S33: -0.1717 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN F AND RESID 1:11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.9877 19.0228 164.0157 REMARK 3 T TENSOR REMARK 3 T11: 0.2613 T22: 0.3792 REMARK 3 T33: 0.3756 T12: -0.0835 REMARK 3 T13: -0.0314 T23: 0.1146 REMARK 3 L TENSOR REMARK 3 L11: 7.1545 L22: 4.6450 REMARK 3 L33: 2.6364 L12: -3.3344 REMARK 3 L13: 1.8736 L23: -0.1195 REMARK 3 S TENSOR REMARK 3 S11: -0.5534 S12: 0.5102 S13: 0.7009 REMARK 3 S21: -0.1240 S22: 0.1929 S23: -0.1196 REMARK 3 S31: 0.1183 S32: 0.0147 S33: 0.2919 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN G AND RESID 1:11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.5200 19.2571 163.9736 REMARK 3 T TENSOR REMARK 3 T11: 0.3500 T22: 0.4342 REMARK 3 T33: 0.4740 T12: -0.0752 REMARK 3 T13: -0.0101 T23: 0.0478 REMARK 3 L TENSOR REMARK 3 L11: 4.7567 L22: 0.5239 REMARK 3 L33: 0.4475 L12: -1.2152 REMARK 3 L13: 0.6051 L23: -0.0202 REMARK 3 S TENSOR REMARK 3 S11: -0.5167 S12: 0.3715 S13: 0.5547 REMARK 3 S21: -0.0704 S22: -0.0061 S23: -0.0229 REMARK 3 S31: -0.2459 S32: 0.1518 S33: 0.5370 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RTL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000087779. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20122 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 27.606 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.28700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: PDB ENTRY 2G1P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG200, 100MM KCL, 10MM MGSO4, REMARK 280 100MM MES BUFFER, PH 6.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.16650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.62050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.14800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.62050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.16650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.14800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 THR A 190 REMARK 465 ALA A 191 REMARK 465 ASN A 192 REMARK 465 PHE A 193 REMARK 465 THR A 194 REMARK 465 ALA A 195 REMARK 465 TYR A 196 REMARK 465 HIS A 197 REMARK 465 THR A 198 REMARK 465 SER A 252 REMARK 465 SER A 253 REMARK 465 ASN A 254 REMARK 465 GLY A 255 REMARK 465 GLY A 256 REMARK 465 THR A 257 REMARK 465 VAL A 272 REMARK 465 VAL A 273 REMARK 465 SER A 274 REMARK 465 PRO A 275 REMARK 465 ALA A 276 REMARK 465 LYS A 277 REMARK 465 LYS A 278 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 23 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 75 CG CD OE1 NE2 REMARK 470 ARG A 137 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 LYS A 140 CG CD CE NZ REMARK 470 MET A 231 CG SD CE REMARK 470 ARG A 239 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 ARG A 248 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 251 CG1 CG2 CD1 REMARK 470 ARG A 258 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 260 CG CD CE NZ REMARK 470 LYS A 269 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 174 N ASP A 174 CA 0.132 REMARK 500 ASP A 174 CA ASP A 174 C 0.182 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 81 64.16 -100.15 REMARK 500 ASN A 120 17.48 54.32 REMARK 500 ASN A 227 -178.30 -170.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SFG A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2G1P RELATED DB: PDB REMARK 900 STRUCTURE OF E. COLI DNA ADENINE METHYLTRANSFERASE (DAM) WITH REMARK 900 COGNATE SEQUENCE REMARK 900 RELATED ID: 2ORE RELATED DB: PDB REMARK 900 BINARY STRUCTURE OF E.COLI DAM REMARK 900 RELATED ID: 4RTJ RELATED DB: PDB REMARK 900 RELATED ID: 4RTK RELATED DB: PDB REMARK 900 RELATED ID: 4RTM RELATED DB: PDB REMARK 900 RELATED ID: 4RTN RELATED DB: PDB REMARK 900 RELATED ID: 4RTO RELATED DB: PDB REMARK 900 RELATED ID: 4RTP RELATED DB: PDB REMARK 900 RELATED ID: 4RTQ RELATED DB: PDB REMARK 900 RELATED ID: 4RTR RELATED DB: PDB REMARK 900 RELATED ID: 4RTS RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHOR STATES THAT RESIDUES 175 WERE MODELED AS SER INSTEAD OF ALA REMARK 999 BECAUSE OF EXTRA DENSITY. DBREF 4RTL A 1 278 UNP H0Q7C9 H0Q7C9_ECOLI 1 278 DBREF 4RTL F 1 11 PDB 4RTL 4RTL 1 11 DBREF 4RTL G 1 11 PDB 4RTL 4RTL 1 11 SEQADV 4RTL MET A -19 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTL GLY A -18 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTL SER A -17 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTL SER A -16 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTL HIS A -15 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTL HIS A -14 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTL HIS A -13 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTL HIS A -12 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTL HIS A -11 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTL HIS A -10 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTL SER A -9 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTL SER A -8 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTL GLY A -7 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTL LEU A -6 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTL VAL A -5 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTL PRO A -4 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTL ARG A -3 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTL GLY A -2 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTL SER A -1 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTL HIS A 0 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTL SER A 175 UNP H0Q7C9 ALA 175 SEE REMARK 999 SEQRES 1 A 298 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 298 LEU VAL PRO ARG GLY SER HIS MET LYS LYS ASN ARG ALA SEQRES 3 A 298 PHE LEU LYS TRP ALA GLY GLY LYS TYR PRO LEU LEU ASP SEQRES 4 A 298 ASP ILE LYS ARG HIS LEU PRO LYS GLY GLU CYS LEU VAL SEQRES 5 A 298 GLU PRO PHE VAL GLY ALA GLY SER VAL PHE LEU ASN THR SEQRES 6 A 298 ASP PHE SER ARG TYR ILE LEU ALA ASP ILE ASN SER ASP SEQRES 7 A 298 LEU ILE SER LEU TYR ASN ILE VAL LYS MET ARG THR ASP SEQRES 8 A 298 GLU TYR VAL GLN ALA ALA ARG GLU LEU PHE VAL PRO GLU SEQRES 9 A 298 THR ASN CYS ALA GLU VAL TYR TYR GLN PHE ARG GLU GLU SEQRES 10 A 298 PHE ASN LYS SER GLN ASP PRO PHE ARG ARG ALA VAL LEU SEQRES 11 A 298 PHE LEU TYR LEU ASN ARG TYR GLY TYR ASN GLY LEU CYS SEQRES 12 A 298 ARG TYR ASN LEU ARG GLY GLU PHE ASN VAL PRO PHE GLY SEQRES 13 A 298 ARG TYR LYS LYS PRO TYR PHE PRO GLU ALA GLU LEU TYR SEQRES 14 A 298 HIS PHE ALA GLU LYS ALA GLN ASN ALA PHE PHE TYR CYS SEQRES 15 A 298 GLU SER TYR ALA ASP SER MET ALA ARG ALA ASP ASP SER SEQRES 16 A 298 SER VAL VAL TYR CYS ASP PRO PRO TYR ALA PRO LEU SER SEQRES 17 A 298 ALA THR ALA ASN PHE THR ALA TYR HIS THR ASN SER PHE SEQRES 18 A 298 THR LEU GLU GLN GLN ALA HIS LEU ALA GLU ILE ALA GLU SEQRES 19 A 298 GLY LEU VAL GLU ARG HIS ILE PRO VAL LEU ILE SER ASN SEQRES 20 A 298 HIS ASP THR MET LEU THR ARG GLU TRP TYR GLN ARG ALA SEQRES 21 A 298 LYS LEU HIS VAL VAL LYS VAL ARG ARG SER ILE SER SER SEQRES 22 A 298 ASN GLY GLY THR ARG LYS LYS VAL ASP GLU LEU LEU ALA SEQRES 23 A 298 LEU TYR LYS PRO GLY VAL VAL SER PRO ALA LYS LYS SEQRES 1 F 11 DT DC DT DA DA DA DG DA DT DC DG SEQRES 1 G 11 DA DC DG DA DT DC DT DT DT DA DG HET SFG A 301 27 HETNAM SFG SINEFUNGIN HETSYN SFG ADENOSYL-ORNITHINE FORMUL 4 SFG C15 H23 N7 O5 FORMUL 5 HOH *88(H2 O) HELIX 1 1 LYS A 14 PRO A 16 5 3 HELIX 2 2 LEU A 17 LEU A 25 1 9 HELIX 3 3 VAL A 41 THR A 45 5 5 HELIX 4 4 ASN A 56 ARG A 69 1 14 HELIX 5 5 ARG A 69 GLU A 79 1 11 HELIX 6 6 LEU A 80 PHE A 81 5 2 HELIX 7 7 VAL A 82 ASN A 86 5 5 HELIX 8 8 CYS A 87 SER A 101 1 15 HELIX 9 9 ASP A 103 GLY A 118 1 16 HELIX 10 10 TYR A 119 LEU A 122 5 4 HELIX 11 11 PRO A 144 ALA A 155 1 12 HELIX 12 12 SER A 164 ALA A 170 1 7 HELIX 13 13 THR A 202 GLU A 218 1 17 HELIX 14 14 THR A 230 TYR A 237 1 8 SHEET 1 A 7 ALA A 158 CYS A 162 0 SHEET 2 A 7 ARG A 49 ASP A 54 1 N LEU A 52 O PHE A 159 SHEET 3 A 7 CYS A 30 GLU A 33 1 N LEU A 31 O ILE A 51 SHEET 4 A 7 SER A 176 CYS A 180 1 O VAL A 177 N VAL A 32 SHEET 5 A 7 VAL A 223 HIS A 228 1 O LEU A 224 N VAL A 178 SHEET 6 A 7 VAL A 261 TYR A 268 -1 O TYR A 268 N VAL A 223 SHEET 7 A 7 LYS A 241 ARG A 249 -1 N VAL A 245 O GLU A 263 SITE 1 AC1 12 TRP A 10 ALA A 11 GLY A 12 LYS A 14 SITE 2 AC1 12 PRO A 34 PHE A 35 VAL A 36 ALA A 38 SITE 3 AC1 12 ASP A 54 SER A 164 TYR A 165 ASP A 181 CRYST1 38.333 66.296 149.241 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026087 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015084 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006701 0.00000