HEADER TRANSFERASE/DNA 15-NOV-14 4RTP TITLE COMPLEX OF ESCHERICHIA COLI DNA ADENINE METHYLTRANSFERASE (DAM) WITH TITLE 2 ADOMET AND WITH DNA CONTAINING PROXIMAL PAP REGULON SEQUENCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA ADENINE METHYLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*TP*TP*TP*AP*AP*AP*GP*AP*TP*CP*G)-3'); COMPND 7 CHAIN: F; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (5'-D(*AP*CP*GP*AP*TP*CP*TP*TP*TP*AP*A)-3'); COMPND 11 CHAIN: G; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 1110693; SOURCE 4 STRAIN: K-12 SUBSTR. MDS42; SOURCE 5 GENE: DAM, ECMDS42_2833; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HMS174(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630 KEYWDS DAM METHYLATION, GATC RECOGNITION, BASE FLIPPING, BACTERIAL KEYWDS 2 VIRULENCE, METHYLATION-INDEPENDENT TRANSCRIPTIONAL REPRESSOR, KEYWDS 3 TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.R.HORTON,X.CHENG REVDAT 4 20-SEP-23 4RTP 1 REMARK SEQADV REVDAT 3 20-MAY-15 4RTP 1 JRNL REVDAT 2 22-APR-15 4RTP 1 JRNL REVDAT 1 15-APR-15 4RTP 0 JRNL AUTH J.R.HORTON,X.ZHANG,R.M.BLUMENTHAL,X.CHENG JRNL TITL STRUCTURES OF ESCHERICHIA COLI DNA ADENINE METHYLTRANSFERASE JRNL TITL 2 (DAM) IN COMPLEX WITH A NON-GATC SEQUENCE: POTENTIAL JRNL TITL 3 IMPLICATIONS FOR METHYLATION-INDEPENDENT TRANSCRIPTIONAL JRNL TITL 4 REPRESSION. JRNL REF NUCLEIC ACIDS RES. V. 43 4296 2015 JRNL REFN ISSN 0305-1048 JRNL PMID 25845600 JRNL DOI 10.1093/NAR/GKV251 REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 13526 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.7631 - 4.0851 0.98 2674 146 0.1981 0.2175 REMARK 3 2 4.0851 - 3.2432 1.00 2590 122 0.1996 0.2420 REMARK 3 3 3.2432 - 2.8335 1.00 2536 149 0.2506 0.3016 REMARK 3 4 2.8335 - 2.5745 1.00 2512 139 0.2742 0.2791 REMARK 3 5 2.5745 - 2.3900 1.00 2530 128 0.2551 0.3229 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2523 REMARK 3 ANGLE : 0.545 3528 REMARK 3 CHIRALITY : 0.024 382 REMARK 3 PLANARITY : 0.003 380 REMARK 3 DIHEDRAL : 18.040 920 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 3:17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.2432 3.2239 91.8708 REMARK 3 T TENSOR REMARK 3 T11: 0.5254 T22: 0.6007 REMARK 3 T33: 0.6244 T12: 0.0367 REMARK 3 T13: -0.0704 T23: 0.0617 REMARK 3 L TENSOR REMARK 3 L11: 4.0195 L22: 1.6041 REMARK 3 L33: 2.9533 L12: 2.4135 REMARK 3 L13: 3.4785 L23: 2.1766 REMARK 3 S TENSOR REMARK 3 S11: -0.3338 S12: 0.9983 S13: 0.1085 REMARK 3 S21: -0.3290 S22: 0.1817 S23: 0.9918 REMARK 3 S31: 0.3062 S32: -0.0146 S33: 0.1285 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 18:68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.3548 -7.3211 94.4852 REMARK 3 T TENSOR REMARK 3 T11: 0.4408 T22: 0.3578 REMARK 3 T33: 0.6142 T12: -0.0446 REMARK 3 T13: -0.1733 T23: 0.0590 REMARK 3 L TENSOR REMARK 3 L11: 3.4582 L22: 5.0288 REMARK 3 L33: 4.6851 L12: -1.1216 REMARK 3 L13: -0.7280 L23: 0.8093 REMARK 3 S TENSOR REMARK 3 S11: 0.2701 S12: 0.2842 S13: -0.8442 REMARK 3 S21: -0.5848 S22: 0.0494 S23: 0.9823 REMARK 3 S31: 0.4505 S32: -0.6989 S33: -0.2861 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 69:87 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2912 10.2795 111.1808 REMARK 3 T TENSOR REMARK 3 T11: 0.3948 T22: 0.5854 REMARK 3 T33: 0.4155 T12: 0.0805 REMARK 3 T13: 0.0728 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 6.4805 L22: 6.2796 REMARK 3 L33: 6.7469 L12: 2.5017 REMARK 3 L13: -0.6214 L23: -1.2493 REMARK 3 S TENSOR REMARK 3 S11: 0.0058 S12: -1.1112 S13: 0.3626 REMARK 3 S21: 1.5384 S22: 0.0037 S23: 0.8017 REMARK 3 S31: -0.2368 S32: -0.7624 S33: 0.1174 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 88:126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.2557 12.2130 104.0441 REMARK 3 T TENSOR REMARK 3 T11: 0.2453 T22: 0.2480 REMARK 3 T33: 0.3247 T12: 0.0386 REMARK 3 T13: -0.0251 T23: -0.0394 REMARK 3 L TENSOR REMARK 3 L11: 6.6091 L22: 5.5004 REMARK 3 L33: 5.5449 L12: 0.0377 REMARK 3 L13: -2.4241 L23: -1.8643 REMARK 3 S TENSOR REMARK 3 S11: -0.0358 S12: -0.2346 S13: 0.4558 REMARK 3 S21: 0.4193 S22: 0.1250 S23: -0.1538 REMARK 3 S31: -0.3227 S32: 0.1338 S33: -0.0911 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 127:144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2363 14.5031 99.6244 REMARK 3 T TENSOR REMARK 3 T11: 0.3993 T22: 0.2676 REMARK 3 T33: 0.2601 T12: 0.0641 REMARK 3 T13: -0.0423 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 4.9641 L22: 6.0121 REMARK 3 L33: 4.4530 L12: 1.0199 REMARK 3 L13: -1.6531 L23: -1.0985 REMARK 3 S TENSOR REMARK 3 S11: -0.0804 S12: -0.1527 S13: 0.6455 REMARK 3 S21: 0.3011 S22: 0.2287 S23: 0.0642 REMARK 3 S31: -0.5269 S32: -0.3012 S33: -0.2134 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 145:162 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.9402 -5.3583 103.0917 REMARK 3 T TENSOR REMARK 3 T11: 0.3835 T22: 0.4925 REMARK 3 T33: 0.5718 T12: -0.1070 REMARK 3 T13: -0.0557 T23: 0.1245 REMARK 3 L TENSOR REMARK 3 L11: 6.8441 L22: 9.0623 REMARK 3 L33: 4.6974 L12: -3.1631 REMARK 3 L13: 0.5412 L23: 2.2214 REMARK 3 S TENSOR REMARK 3 S11: 0.0545 S12: -0.6170 S13: -1.3862 REMARK 3 S21: 0.4890 S22: -0.0260 S23: 1.5877 REMARK 3 S31: 0.6492 S32: -0.6220 S33: -0.0338 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 163:228 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9195 -9.9871 83.4524 REMARK 3 T TENSOR REMARK 3 T11: 0.7270 T22: 0.6336 REMARK 3 T33: 0.5065 T12: 0.1816 REMARK 3 T13: -0.0858 T23: -0.1458 REMARK 3 L TENSOR REMARK 3 L11: 5.1120 L22: 2.6822 REMARK 3 L33: 4.9134 L12: -1.5352 REMARK 3 L13: 0.6494 L23: 1.1736 REMARK 3 S TENSOR REMARK 3 S11: 0.3920 S12: 0.8200 S13: -0.6994 REMARK 3 S21: -0.7492 S22: -0.3353 S23: 0.2002 REMARK 3 S31: 0.8527 S32: 0.4293 S33: -0.1305 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN A AND RESID 229:245 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4756 -6.2965 71.8048 REMARK 3 T TENSOR REMARK 3 T11: 1.3076 T22: 1.2669 REMARK 3 T33: 0.5144 T12: 0.4899 REMARK 3 T13: -0.1885 T23: -0.2006 REMARK 3 L TENSOR REMARK 3 L11: 1.0218 L22: 2.0059 REMARK 3 L33: 1.8547 L12: -0.0865 REMARK 3 L13: -1.2764 L23: 0.9003 REMARK 3 S TENSOR REMARK 3 S11: 0.3326 S12: 0.6635 S13: -0.2376 REMARK 3 S21: -1.2095 S22: -0.3748 S23: 0.5412 REMARK 3 S31: 0.9107 S32: -0.2842 S33: 0.0887 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN A AND RESID 246:270 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0183 -5.2132 75.5983 REMARK 3 T TENSOR REMARK 3 T11: 0.7836 T22: 0.9385 REMARK 3 T33: 0.7124 T12: 0.1049 REMARK 3 T13: -0.3123 T23: -0.1703 REMARK 3 L TENSOR REMARK 3 L11: 5.4335 L22: 9.0025 REMARK 3 L33: 2.6798 L12: -3.9621 REMARK 3 L13: -0.3654 L23: 0.8989 REMARK 3 S TENSOR REMARK 3 S11: 0.6754 S12: 0.8155 S13: -0.0853 REMARK 3 S21: 1.0053 S22: -0.6363 S23: -0.6186 REMARK 3 S31: 0.4369 S32: -0.2058 S33: 0.0830 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN F AND RESID 1:11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8318 18.7072 85.9639 REMARK 3 T TENSOR REMARK 3 T11: 0.4738 T22: 0.8174 REMARK 3 T33: 0.7701 T12: -0.0473 REMARK 3 T13: 0.0852 T23: 0.1900 REMARK 3 L TENSOR REMARK 3 L11: 2.4968 L22: 2.3336 REMARK 3 L33: 2.6173 L12: 0.2524 REMARK 3 L13: -1.9876 L23: -0.5418 REMARK 3 S TENSOR REMARK 3 S11: -0.4225 S12: 1.2738 S13: 0.7669 REMARK 3 S21: -0.5194 S22: 0.0259 S23: -0.3663 REMARK 3 S31: 0.0627 S32: 0.0430 S33: 0.3674 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: ( CHAIN G AND RESID 1:11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0019 18.5555 86.1399 REMARK 3 T TENSOR REMARK 3 T11: 0.4834 T22: 0.7638 REMARK 3 T33: 0.7594 T12: -0.0989 REMARK 3 T13: 0.0752 T23: 0.0774 REMARK 3 L TENSOR REMARK 3 L11: 2.2431 L22: 4.7734 REMARK 3 L33: 4.2346 L12: -2.8375 REMARK 3 L13: 0.2681 L23: -1.2516 REMARK 3 S TENSOR REMARK 3 S11: -0.0492 S12: 0.7397 S13: 0.9331 REMARK 3 S21: -0.6958 S22: 0.1145 S23: -0.6654 REMARK 3 S31: -0.0034 S32: 0.0502 S33: 0.0914 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RTP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000087783. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13573 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 34.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.31100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: GLRF REMARK 200 STARTING MODEL: PDB ENTRY 2G1P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG200, 100MM KCL, 10MM MGSO4, REMARK 280 100MM HEPES BUFFER, PH 6.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.90850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.05100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.61250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.05100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.90850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.61250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ALA A 189 REMARK 465 THR A 190 REMARK 465 ALA A 191 REMARK 465 ASN A 192 REMARK 465 PHE A 193 REMARK 465 THR A 194 REMARK 465 ALA A 195 REMARK 465 TYR A 196 REMARK 465 HIS A 197 REMARK 465 THR A 198 REMARK 465 ASN A 199 REMARK 465 ARG A 248 REMARK 465 ARG A 249 REMARK 465 SER A 250 REMARK 465 ILE A 251 REMARK 465 SER A 252 REMARK 465 SER A 253 REMARK 465 ASN A 254 REMARK 465 GLY A 255 REMARK 465 GLY A 256 REMARK 465 THR A 257 REMARK 465 ARG A 258 REMARK 465 GLY A 271 REMARK 465 VAL A 272 REMARK 465 VAL A 273 REMARK 465 SER A 274 REMARK 465 PRO A 275 REMARK 465 ALA A 276 REMARK 465 LYS A 277 REMARK 465 LYS A 278 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 14 CG CD CE NZ REMARK 470 ASP A 20 CG OD1 OD2 REMARK 470 ARG A 23 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 GLN A 75 CG CD OE1 NE2 REMARK 470 ARG A 137 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 LYS A 140 CG CD CE NZ REMARK 470 ASP A 174 CG OD1 OD2 REMARK 470 SER A 175 OG REMARK 470 LEU A 187 CG CD1 CD2 REMARK 470 SER A 188 OG REMARK 470 SER A 200 OG REMARK 470 GLU A 218 CG CD OE1 OE2 REMARK 470 ARG A 219 CG CD NE CZ NH1 NH2 REMARK 470 MET A 231 CG SD CE REMARK 470 GLU A 235 CG CD OE1 OE2 REMARK 470 ARG A 239 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 VAL A 247 CG1 CG2 REMARK 470 LYS A 259 CG CD CE NZ REMARK 470 LYS A 260 CG CD CE NZ REMARK 470 ASP A 262 CG OD1 OD2 REMARK 470 LYS A 269 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 173 -169.24 -127.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2G1P RELATED DB: PDB REMARK 900 STRUCTURE OF E. COLI DNA ADENINE METHYLTRANSFERASE (DAM) WITH REMARK 900 COGNATE SEQUENCE REMARK 900 RELATED ID: 2ORE RELATED DB: PDB REMARK 900 BINARY STRUCTURE OF E.COLI DAM REMARK 900 RELATED ID: 4RTJ RELATED DB: PDB REMARK 900 RELATED ID: 4RTK RELATED DB: PDB REMARK 900 RELATED ID: 4RTL RELATED DB: PDB REMARK 900 RELATED ID: 4RTM RELATED DB: PDB REMARK 900 RELATED ID: 4RTN RELATED DB: PDB REMARK 900 RELATED ID: 4RTO RELATED DB: PDB REMARK 900 RELATED ID: 4RTQ RELATED DB: PDB REMARK 900 RELATED ID: 4RTR RELATED DB: PDB REMARK 900 RELATED ID: 4RTS RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHOR STATES THAT RESIDUES 175 WERE MODELED AS SER INSTEAD OF ALA REMARK 999 BECAUSE OF EXTRA DENSITY. DBREF 4RTP A 1 278 UNP H0Q7C9 H0Q7C9_ECOLI 1 278 DBREF 4RTP F 1 11 PDB 4RTP 4RTP 1 11 DBREF 4RTP G 1 11 PDB 4RTP 4RTP 1 11 SEQADV 4RTP MET A -19 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTP GLY A -18 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTP SER A -17 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTP SER A -16 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTP HIS A -15 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTP HIS A -14 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTP HIS A -13 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTP HIS A -12 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTP HIS A -11 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTP HIS A -10 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTP SER A -9 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTP SER A -8 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTP GLY A -7 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTP LEU A -6 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTP VAL A -5 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTP PRO A -4 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTP ARG A -3 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTP GLY A -2 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTP SER A -1 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTP HIS A 0 UNP H0Q7C9 EXPRESSION TAG SEQADV 4RTP SER A 175 UNP H0Q7C9 ALA 175 SEE REMARK 999 SEQRES 1 A 298 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 298 LEU VAL PRO ARG GLY SER HIS MET LYS LYS ASN ARG ALA SEQRES 3 A 298 PHE LEU LYS TRP ALA GLY GLY LYS TYR PRO LEU LEU ASP SEQRES 4 A 298 ASP ILE LYS ARG HIS LEU PRO LYS GLY GLU CYS LEU VAL SEQRES 5 A 298 GLU PRO PHE VAL GLY ALA GLY SER VAL PHE LEU ASN THR SEQRES 6 A 298 ASP PHE SER ARG TYR ILE LEU ALA ASP ILE ASN SER ASP SEQRES 7 A 298 LEU ILE SER LEU TYR ASN ILE VAL LYS MET ARG THR ASP SEQRES 8 A 298 GLU TYR VAL GLN ALA ALA ARG GLU LEU PHE VAL PRO GLU SEQRES 9 A 298 THR ASN CYS ALA GLU VAL TYR TYR GLN PHE ARG GLU GLU SEQRES 10 A 298 PHE ASN LYS SER GLN ASP PRO PHE ARG ARG ALA VAL LEU SEQRES 11 A 298 PHE LEU TYR LEU ASN ARG TYR GLY TYR ASN GLY LEU CYS SEQRES 12 A 298 ARG TYR ASN LEU ARG GLY GLU PHE ASN VAL PRO PHE GLY SEQRES 13 A 298 ARG TYR LYS LYS PRO TYR PHE PRO GLU ALA GLU LEU TYR SEQRES 14 A 298 HIS PHE ALA GLU LYS ALA GLN ASN ALA PHE PHE TYR CYS SEQRES 15 A 298 GLU SER TYR ALA ASP SER MET ALA ARG ALA ASP ASP SER SEQRES 16 A 298 SER VAL VAL TYR CYS ASP PRO PRO TYR ALA PRO LEU SER SEQRES 17 A 298 ALA THR ALA ASN PHE THR ALA TYR HIS THR ASN SER PHE SEQRES 18 A 298 THR LEU GLU GLN GLN ALA HIS LEU ALA GLU ILE ALA GLU SEQRES 19 A 298 GLY LEU VAL GLU ARG HIS ILE PRO VAL LEU ILE SER ASN SEQRES 20 A 298 HIS ASP THR MET LEU THR ARG GLU TRP TYR GLN ARG ALA SEQRES 21 A 298 LYS LEU HIS VAL VAL LYS VAL ARG ARG SER ILE SER SER SEQRES 22 A 298 ASN GLY GLY THR ARG LYS LYS VAL ASP GLU LEU LEU ALA SEQRES 23 A 298 LEU TYR LYS PRO GLY VAL VAL SER PRO ALA LYS LYS SEQRES 1 F 11 DT DT DT DA DA DA DG DA DT DC DG SEQRES 1 G 11 DA DC DG DA DT DC DT DT DT DA DA HET SAM A 301 27 HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 4 SAM C15 H22 N6 O5 S FORMUL 5 HOH *25(H2 O) HELIX 1 1 LEU A 17 LEU A 25 1 9 HELIX 2 2 GLY A 39 ASN A 44 1 6 HELIX 3 3 ASN A 56 ARG A 69 1 14 HELIX 4 4 ARG A 69 GLU A 79 1 11 HELIX 5 5 LEU A 80 PHE A 81 5 2 HELIX 6 6 VAL A 82 ASN A 86 5 5 HELIX 7 7 CYS A 87 SER A 101 1 15 HELIX 8 8 ASP A 103 GLY A 118 1 16 HELIX 9 9 TYR A 119 LEU A 122 5 4 HELIX 10 10 PRO A 144 ALA A 155 1 12 HELIX 11 11 SER A 164 ALA A 170 1 7 HELIX 12 12 THR A 202 ARG A 219 1 18 HELIX 13 13 THR A 230 TYR A 237 1 8 SHEET 1 A 7 ALA A 158 CYS A 162 0 SHEET 2 A 7 ARG A 49 ASP A 54 1 N LEU A 52 O PHE A 159 SHEET 3 A 7 CYS A 30 GLU A 33 1 N LEU A 31 O ILE A 51 SHEET 4 A 7 SER A 176 CYS A 180 1 O VAL A 177 N VAL A 32 SHEET 5 A 7 VAL A 223 HIS A 228 1 O LEU A 224 N CYS A 180 SHEET 6 A 7 GLU A 263 TYR A 268 -1 O LEU A 264 N ASN A 227 SHEET 7 A 7 LYS A 241 VAL A 245 -1 N LYS A 241 O LEU A 267 SITE 1 AC1 15 TRP A 10 ALA A 11 GLY A 12 PHE A 35 SITE 2 AC1 15 VAL A 36 GLY A 37 ALA A 38 SER A 40 SITE 3 AC1 15 ASP A 54 ILE A 55 SER A 164 TYR A 165 SITE 4 AC1 15 ASP A 181 PHE A 201 GLN A 205 CRYST1 35.817 63.225 144.102 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027920 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015817 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006940 0.00000