data_4RUM # _entry.id 4RUM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI NDB NA3311 ? ? RCSB RCSB087815 ? ? PDB 4RUM pdb_00004rum 10.2210/pdb4rum/pdb WWPDB D_1000087815 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-04-08 2 'Structure model' 1 1 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_struct_conn_angle 5 2 'Structure model' struct_conn 6 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 10 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 11 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 13 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 14 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 2 'Structure model' '_pdbx_struct_conn_angle.value' 21 2 'Structure model' '_struct_conn.pdbx_dist_value' 22 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 23 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 30 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 31 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 32 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 33 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 34 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 35 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 36 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4RUM _pdbx_database_status.recvd_initial_deposition_date 2014-11-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ramesh, A.' 1 'Winkler, W.C.' 2 # _citation.id primary _citation.title 'Bacterial riboswitches cooperatively bind Ni(2+) or Co(2+) ions and control expression of heavy metal transporters.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 57 _citation.page_first 1088 _citation.page_last 1098 _citation.year 2015 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25794617 _citation.pdbx_database_id_DOI 10.1016/j.molcel.2015.02.009 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Furukawa, K.' 1 ? primary 'Ramesh, A.' 2 ? primary 'Zhou, Z.' 3 ? primary 'Weinberg, Z.' 4 ? primary 'Vallery, T.' 5 ? primary 'Winkler, W.C.' 6 ? primary 'Breaker, R.R.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'NiCo riboswitch RNA' 30640.225 1 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 7 ? ? ? ? 3 non-polymer syn 'COBALT (II) ION' 58.933 4 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 5 non-polymer syn 'STRONTIUM ION' 87.620 1 ? ? ? ? 6 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 7 water nat water 18.015 88 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(GTP)GGAACUGAGCAGGCAAUGACCAGAGCGGUCAUGCAGCCGGGCUGCGAAAGCGGCAACAGAUGAUUACACGCACAU CUGUGGGACAGUUCCCAC ; _entity_poly.pdbx_seq_one_letter_code_can ;GGGAACUGAGCAGGCAAUGACCAGAGCGGUCAUGCAGCCGGGCUGCGAAAGCGGCAACAGAUGAUUACACGCACAUCUGU GGGACAGUUCCCAC ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 'COBALT (II) ION' CO 4 'MAGNESIUM ION' MG 5 'STRONTIUM ION' SR 6 GLYCEROL GOL 7 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 G n 1 3 G n 1 4 A n 1 5 A n 1 6 C n 1 7 U n 1 8 G n 1 9 A n 1 10 G n 1 11 C n 1 12 A n 1 13 G n 1 14 G n 1 15 C n 1 16 A n 1 17 A n 1 18 U n 1 19 G n 1 20 A n 1 21 C n 1 22 C n 1 23 A n 1 24 G n 1 25 A n 1 26 G n 1 27 C n 1 28 G n 1 29 G n 1 30 U n 1 31 C n 1 32 A n 1 33 U n 1 34 G n 1 35 C n 1 36 A n 1 37 G n 1 38 C n 1 39 C n 1 40 G n 1 41 G n 1 42 G n 1 43 C n 1 44 U n 1 45 G n 1 46 C n 1 47 G n 1 48 A n 1 49 A n 1 50 A n 1 51 G n 1 52 C n 1 53 G n 1 54 G n 1 55 C n 1 56 A n 1 57 A n 1 58 C n 1 59 A n 1 60 G n 1 61 A n 1 62 U n 1 63 G n 1 64 A n 1 65 U n 1 66 U n 1 67 A n 1 68 C n 1 69 A n 1 70 C n 1 71 G n 1 72 C n 1 73 A n 1 74 C n 1 75 A n 1 76 U n 1 77 C n 1 78 U n 1 79 G n 1 80 U n 1 81 G n 1 82 G n 1 83 G n 1 84 A n 1 85 C n 1 86 A n 1 87 G n 1 88 U n 1 89 U n 1 90 C n 1 91 C n 1 92 C n 1 93 A n 1 94 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific Synthetic _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details 'In vitro transcribed RNA' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 SR non-polymer . 'STRONTIUM ION' ? 'Sr 2' 87.620 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 6 6 GTP GTP A . n A 1 2 G 2 7 7 G G A . n A 1 3 G 3 8 8 G G A . n A 1 4 A 4 9 9 A A A . n A 1 5 A 5 10 10 A A A . n A 1 6 C 6 11 11 C C A . n A 1 7 U 7 12 12 U U A . n A 1 8 G 8 13 13 G G A . n A 1 9 A 9 14 14 A A A . n A 1 10 G 10 15 15 G G A . n A 1 11 C 11 16 16 C C A . n A 1 12 A 12 17 17 A A A . n A 1 13 G 13 18 18 G G A . n A 1 14 G 14 19 19 G G A . n A 1 15 C 15 20 20 C C A . n A 1 16 A 16 21 21 A A A . n A 1 17 A 17 22 22 A A A . n A 1 18 U 18 23 23 U U A . n A 1 19 G 19 24 24 G G A . n A 1 20 A 20 25 25 A A A . n A 1 21 C 21 26 26 C C A . n A 1 22 C 22 27 27 C C A . n A 1 23 A 23 28 28 A A A . n A 1 24 G 24 29 29 G G A . n A 1 25 A 25 30 30 A A A . n A 1 26 G 26 31 31 G G A . n A 1 27 C 27 32 32 C C A . n A 1 28 G 28 33 33 G G A . n A 1 29 G 29 34 34 G G A . n A 1 30 U 30 35 35 U U A . n A 1 31 C 31 36 36 C C A . n A 1 32 A 32 37 37 A A A . n A 1 33 U 33 38 38 U U A . n A 1 34 G 34 39 39 G G A . n A 1 35 C 35 40 40 C C A . n A 1 36 A 36 41 41 A A A . n A 1 37 G 37 42 42 G G A . n A 1 38 C 38 43 43 C C A . n A 1 39 C 39 44 44 C C A . n A 1 40 G 40 45 45 G G A . n A 1 41 G 41 46 46 G G A . n A 1 42 G 42 47 47 G G A . n A 1 43 C 43 48 48 C C A . n A 1 44 U 44 49 49 U U A . n A 1 45 G 45 50 50 G G A . n A 1 46 C 46 51 51 C C A . n A 1 47 G 47 52 52 G G A . n A 1 48 A 48 53 53 A A A . n A 1 49 A 49 54 54 A A A . n A 1 50 A 50 55 55 A A A . n A 1 51 G 51 56 56 G G A . n A 1 52 C 52 57 57 C C A . n A 1 53 G 53 58 58 G G A . n A 1 54 G 54 59 59 G G A . n A 1 55 C 55 60 60 C C A . n A 1 56 A 56 61 61 A A A . n A 1 57 A 57 62 62 A A A . n A 1 58 C 58 63 63 C C A . n A 1 59 A 59 64 64 A A A . n A 1 60 G 60 65 65 G G A . n A 1 61 A 61 66 66 A A A . n A 1 62 U 62 67 67 U U A . n A 1 63 G 63 68 68 G G A . n A 1 64 A 64 69 69 A A A . n A 1 65 U 65 70 70 U U A . n A 1 66 U 66 71 ? ? ? A . n A 1 67 A 67 72 72 A A A . n A 1 68 C 68 73 73 C C A . n A 1 69 A 69 74 74 A A A . n A 1 70 C 70 75 75 C C A . n A 1 71 G 71 76 76 G G A . n A 1 72 C 72 77 77 C C A . n A 1 73 A 73 78 78 A A A . n A 1 74 C 74 79 79 C C A . n A 1 75 A 75 80 80 A A A . n A 1 76 U 76 81 81 U U A . n A 1 77 C 77 82 82 C C A . n A 1 78 U 78 83 83 U U A . n A 1 79 G 79 84 84 G G A . n A 1 80 U 80 85 85 U U A . n A 1 81 G 81 86 86 G G A . n A 1 82 G 82 87 87 G G A . n A 1 83 G 83 88 88 G G A . n A 1 84 A 84 89 89 A A A . n A 1 85 C 85 90 90 C C A . n A 1 86 A 86 91 91 A A A . n A 1 87 G 87 92 92 G G A . n A 1 88 U 88 93 93 U U A . n A 1 89 U 89 94 94 U U A . n A 1 90 C 90 95 95 C C A . n A 1 91 C 91 96 96 C C A . n A 1 92 C 92 97 97 C C A . n A 1 93 A 93 98 98 A A A . n A 1 94 C 94 99 99 C C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K 1 101 101 K K A . C 2 K 1 102 102 K K A . D 2 K 1 103 103 K K A . E 2 K 1 104 104 K K A . F 2 K 1 105 105 K K A . G 2 K 1 106 106 K K A . H 2 K 1 107 107 K K A . I 3 CO 1 108 108 CO CO A . J 3 CO 1 109 109 CO CO A . K 3 CO 1 110 110 CO CO A . L 3 CO 1 111 111 CO CO A . M 4 MG 1 112 112 MG MG A . N 4 MG 1 113 113 MG MG A . O 5 SR 1 114 114 SR SR A . P 6 GOL 1 115 115 GOL GOL A . Q 7 HOH 1 201 201 HOH HOH A . Q 7 HOH 2 202 202 HOH HOH A . Q 7 HOH 3 203 203 HOH HOH A . Q 7 HOH 4 204 204 HOH HOH A . Q 7 HOH 5 205 205 HOH HOH A . Q 7 HOH 6 206 206 HOH HOH A . Q 7 HOH 7 207 207 HOH HOH A . Q 7 HOH 8 208 208 HOH HOH A . Q 7 HOH 9 209 209 HOH HOH A . Q 7 HOH 10 210 210 HOH HOH A . Q 7 HOH 11 211 211 HOH HOH A . Q 7 HOH 12 212 212 HOH HOH A . Q 7 HOH 13 213 213 HOH HOH A . Q 7 HOH 14 214 214 HOH HOH A . Q 7 HOH 15 215 215 HOH HOH A . Q 7 HOH 16 216 216 HOH HOH A . Q 7 HOH 17 217 217 HOH HOH A . Q 7 HOH 18 218 218 HOH HOH A . Q 7 HOH 19 219 219 HOH HOH A . Q 7 HOH 20 220 220 HOH HOH A . Q 7 HOH 21 221 221 HOH HOH A . Q 7 HOH 22 222 222 HOH HOH A . Q 7 HOH 23 223 223 HOH HOH A . Q 7 HOH 24 224 224 HOH HOH A . Q 7 HOH 25 225 225 HOH HOH A . Q 7 HOH 26 226 226 HOH HOH A . Q 7 HOH 27 227 227 HOH HOH A . Q 7 HOH 28 228 228 HOH HOH A . Q 7 HOH 29 229 229 HOH HOH A . Q 7 HOH 30 230 230 HOH HOH A . Q 7 HOH 31 231 231 HOH HOH A . Q 7 HOH 32 232 232 HOH HOH A . Q 7 HOH 33 233 233 HOH HOH A . Q 7 HOH 34 234 234 HOH HOH A . Q 7 HOH 35 235 235 HOH HOH A . Q 7 HOH 36 236 236 HOH HOH A . Q 7 HOH 37 237 237 HOH HOH A . Q 7 HOH 38 238 238 HOH HOH A . Q 7 HOH 39 239 239 HOH HOH A . Q 7 HOH 40 240 240 HOH HOH A . Q 7 HOH 41 241 241 HOH HOH A . Q 7 HOH 42 242 242 HOH HOH A . Q 7 HOH 43 243 243 HOH HOH A . Q 7 HOH 44 244 244 HOH HOH A . Q 7 HOH 45 245 245 HOH HOH A . Q 7 HOH 46 246 246 HOH HOH A . Q 7 HOH 47 247 247 HOH HOH A . Q 7 HOH 48 248 248 HOH HOH A . Q 7 HOH 49 249 249 HOH HOH A . Q 7 HOH 50 250 250 HOH HOH A . Q 7 HOH 51 251 251 HOH HOH A . Q 7 HOH 52 252 252 HOH HOH A . Q 7 HOH 53 253 253 HOH HOH A . Q 7 HOH 54 254 254 HOH HOH A . Q 7 HOH 55 255 255 HOH HOH A . Q 7 HOH 56 256 256 HOH HOH A . Q 7 HOH 57 257 257 HOH HOH A . Q 7 HOH 58 258 258 HOH HOH A . Q 7 HOH 59 259 259 HOH HOH A . Q 7 HOH 60 260 260 HOH HOH A . Q 7 HOH 61 261 261 HOH HOH A . Q 7 HOH 62 262 262 HOH HOH A . Q 7 HOH 63 263 263 HOH HOH A . Q 7 HOH 64 264 264 HOH HOH A . Q 7 HOH 65 265 265 HOH HOH A . Q 7 HOH 66 266 266 HOH HOH A . Q 7 HOH 67 267 267 HOH HOH A . Q 7 HOH 68 268 268 HOH HOH A . Q 7 HOH 69 269 269 HOH HOH A . Q 7 HOH 70 270 270 HOH HOH A . Q 7 HOH 71 271 271 HOH HOH A . Q 7 HOH 72 272 272 HOH HOH A . Q 7 HOH 73 273 273 HOH HOH A . Q 7 HOH 74 274 274 HOH HOH A . Q 7 HOH 75 275 275 HOH HOH A . Q 7 HOH 76 276 276 HOH HOH A . Q 7 HOH 77 277 277 HOH HOH A . Q 7 HOH 78 278 278 HOH HOH A . Q 7 HOH 79 279 279 HOH HOH A . Q 7 HOH 80 280 280 HOH HOH A . Q 7 HOH 81 281 281 HOH HOH A . Q 7 HOH 82 282 282 HOH HOH A . Q 7 HOH 83 283 283 HOH HOH A . Q 7 HOH 84 284 284 HOH HOH A . Q 7 HOH 85 285 285 HOH HOH A . Q 7 HOH 86 286 286 HOH HOH A . Q 7 HOH 87 287 287 HOH HOH A . Q 7 HOH 88 288 288 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A C 99 ? "C5'" ? A C 94 "C5'" 2 1 Y 1 A C 99 ? "C4'" ? A C 94 "C4'" 3 1 Y 1 A C 99 ? "O4'" ? A C 94 "O4'" 4 1 Y 1 A C 99 ? "C3'" ? A C 94 "C3'" 5 1 Y 1 A C 99 ? "O3'" ? A C 94 "O3'" 6 1 Y 1 A C 99 ? "C2'" ? A C 94 "C2'" 7 1 Y 1 A C 99 ? "O2'" ? A C 94 "O2'" 8 1 Y 1 A C 99 ? "C1'" ? A C 94 "C1'" 9 1 Y 1 A C 99 ? N1 ? A C 94 N1 10 1 Y 1 A C 99 ? C2 ? A C 94 C2 11 1 Y 1 A C 99 ? O2 ? A C 94 O2 12 1 Y 1 A C 99 ? N3 ? A C 94 N3 13 1 Y 1 A C 99 ? C4 ? A C 94 C4 14 1 Y 1 A C 99 ? N4 ? A C 94 N4 15 1 Y 1 A C 99 ? C5 ? A C 94 C5 16 1 Y 1 A C 99 ? C6 ? A C 94 C6 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 SHARP phasing . ? 2 PHENIX refinement '(phenix.refine: 1.8.4_1496)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 4RUM _cell.length_a 95.790 _cell.length_b 95.790 _cell.length_c 229.986 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4RUM _symmetry.space_group_name_H-M 'I 4 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4RUM _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.30 _exptl_crystal.density_percent_sol 71.43 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;10% v/v methyl pentanediol, 40 mM sodium cacodylate pH 7.0, 12 mM spermine tetrahydrochloride, 40 mM lithium chloride and 80 mM strontium chloride, VAPOR DIFFUSION, HANGING DROP, temperature 298K ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2012-09-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'ROSENBAUM-ROCK HIGH-RESOLUTION DOUBLE-CRYSTAL MONOCHROMATOR' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9917 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9917 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4RUM _reflns.observed_criterion_sigma_I 1.9 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.64 _reflns.number_obs 16067 _reflns.number_all 16099 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.069 _reflns.pdbx_netI_over_sigmaI 41.1 _reflns.B_iso_Wilson_estimate 62.5 _reflns.pdbx_redundancy 14.3 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.64 _reflns_shell.d_res_low 2.70 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.00 _reflns_shell.meanI_over_sigI_obs 1.93 _reflns_shell.pdbx_redundancy 14.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4RUM _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 22654 _refine.ls_number_reflns_all 29961 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33.867 _refine.ls_d_res_high 2.6426 _refine.ls_percent_reflns_obs 75.61 _refine.ls_R_factor_obs 0.1976 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1939 _refine.ls_R_factor_R_free 0.2311 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.94 _refine.ls_number_reflns_R_free 2252 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 35.7 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.28 _refine.pdbx_overall_phase_error 23.56 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 4RUM _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs 0.27 _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1995 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 88 _refine_hist.number_atoms_total 2103 _refine_hist.d_res_high 2.6426 _refine_hist.d_res_low 33.867 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.006 ? ? 2238 'X-RAY DIFFRACTION' ? f_angle_d 1.238 ? ? 3486 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 16.705 ? ? 1093 'X-RAY DIFFRACTION' ? f_chiral_restr 0.049 ? ? 460 'X-RAY DIFFRACTION' ? f_plane_restr 0.007 ? ? 92 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.6426 2.7001 661 0.3674 40.00 0.4163 . . 73 . . . . 'X-RAY DIFFRACTION' . 2.7001 2.7628 843 0.3497 50.00 0.3317 . . 94 . . . . 'X-RAY DIFFRACTION' . 2.7628 2.8319 895 0.3077 52.00 0.3551 . . 99 . . . . 'X-RAY DIFFRACTION' . 2.8319 2.9084 880 0.2987 53.00 0.3022 . . 98 . . . . 'X-RAY DIFFRACTION' . 2.9084 2.9940 896 0.2473 53.00 0.3021 . . 100 . . . . 'X-RAY DIFFRACTION' . 2.9940 3.0905 904 0.2448 54.00 0.3358 . . 100 . . . . 'X-RAY DIFFRACTION' . 3.0905 3.2009 1057 0.2029 63.00 0.2711 . . 114 . . . . 'X-RAY DIFFRACTION' . 3.2009 3.3290 1291 0.1682 76.00 0.2066 . . 135 . . . . 'X-RAY DIFFRACTION' . 3.3290 3.4803 1371 0.1726 83.00 0.2218 . . 161 . . . . 'X-RAY DIFFRACTION' . 3.4803 3.6636 1585 0.1629 93.00 0.1834 . . 173 . . . . 'X-RAY DIFFRACTION' . 3.6636 3.8929 1624 0.1508 96.00 0.1829 . . 175 . . . . 'X-RAY DIFFRACTION' . 3.8929 4.1929 1676 0.1614 99.00 0.1939 . . 181 . . . . 'X-RAY DIFFRACTION' . 4.1929 4.6139 1676 0.1576 100.00 0.2288 . . 191 . . . . 'X-RAY DIFFRACTION' . 4.6139 5.2794 1697 0.1686 100.00 0.1799 . . 184 . . . . 'X-RAY DIFFRACTION' . 5.2794 6.6433 1678 0.1827 100.00 0.2301 . . 183 . . . . 'X-RAY DIFFRACTION' . 6.6433 33.8696 1668 0.2518 98.00 0.2666 . . 191 . . . . # _database_PDB_matrix.entry_id 4RUM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4RUM _struct.title 'Crystal structure of the NiCo transition-metal riboswitch bound to cobalt' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4RUM _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA helix, Ligand sensor, cobalt and nickel binding, RNA, Riboswitch' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 4 ? N N N 4 ? O N N 5 ? P N N 6 ? Q N N 7 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4RUM _struct_ref.pdbx_db_accession 4RUM _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4RUM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 94 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4RUM _struct_ref_seq.db_align_beg 6 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 99 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 6 _struct_ref_seq.pdbx_auth_seq_align_end 99 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A GTP 6 A G 7 1_555 ? ? ? ? ? ? ? 1.596 ? ? metalc1 metalc ? ? A GTP 1 O2B ? ? ? 1_555 D K . K ? ? A GTP 6 A K 103 1_555 ? ? ? ? ? ? ? 2.696 ? ? metalc2 metalc ? ? A GTP 1 O1A ? ? ? 1_555 D K . K ? ? A GTP 6 A K 103 1_555 ? ? ? ? ? ? ? 2.946 ? ? metalc3 metalc ? ? A GTP 1 O6 ? ? ? 1_555 O SR . SR ? ? A GTP 6 A SR 114 1_555 ? ? ? ? ? ? ? 2.448 ? ? metalc4 metalc ? ? A GTP 1 O1G ? ? ? 1_555 O SR . SR ? ? A GTP 6 A SR 114 1_555 ? ? ? ? ? ? ? 2.511 ? ? metalc5 metalc ? ? A GTP 1 O1B ? ? ? 1_555 O SR . SR ? ? A GTP 6 A SR 114 1_555 ? ? ? ? ? ? ? 2.581 ? ? metalc6 metalc ? ? A GTP 1 N7 ? ? ? 1_555 O SR . SR ? ? A GTP 6 A SR 114 1_555 ? ? ? ? ? ? ? 2.748 ? ? metalc7 metalc ? ? A A 9 N7 ? ? ? 1_555 K CO . CO ? ? A A 14 A CO 110 1_555 ? ? ? ? ? ? ? 1.934 ? ? metalc8 metalc ? ? A G 10 O6 ? ? ? 1_555 M MG . MG ? ? A G 15 A MG 112 1_555 ? ? ? ? ? ? ? 2.497 ? ? metalc9 metalc ? ? A G 13 O6 ? ? ? 1_555 L CO . CO ? ? A G 18 A CO 111 1_555 ? ? ? ? ? ? ? 2.611 ? ? metalc10 metalc ? ? A A 36 OP2 ? ? ? 1_555 M MG . MG ? ? A A 41 A MG 112 1_555 ? ? ? ? ? ? ? 2.485 ? ? metalc11 metalc ? ? A G 40 N7 ? ? ? 1_555 K CO . CO ? ? A G 45 A CO 110 1_555 ? ? ? ? ? ? ? 2.154 ? ? metalc12 metalc ? ? A G 41 "O2'" ? ? ? 1_555 I CO . CO ? ? A G 46 A CO 108 1_555 ? ? ? ? ? ? ? 2.321 ? ? metalc13 metalc ? ? A G 41 N7 ? ? ? 1_555 J CO . CO ? ? A G 46 A CO 109 1_555 ? ? ? ? ? ? ? 2.072 ? ? metalc14 metalc ? ? A G 42 N7 ? ? ? 1_555 I CO . CO ? ? A G 47 A CO 108 1_555 ? ? ? ? ? ? ? 2.187 ? ? metalc15 metalc ? ? A U 44 O4 ? ? ? 1_555 C K . K ? ? A U 49 A K 102 1_555 ? ? ? ? ? ? ? 2.631 ? ? metalc16 metalc ? ? A C 46 "O3'" ? ? ? 1_555 B K . K ? ? A C 51 A K 101 1_555 ? ? ? ? ? ? ? 3.234 ? ? metalc17 metalc ? ? A G 47 OP1 ? ? ? 1_555 B K . K ? ? A G 52 A K 101 1_555 ? ? ? ? ? ? ? 3.468 ? ? metalc18 metalc ? ? A G 53 O6 ? ? ? 1_555 C K . K ? ? A G 58 A K 102 1_555 ? ? ? ? ? ? ? 2.887 ? ? metalc19 metalc ? ? A G 81 O6 ? ? ? 1_555 G K . K ? ? A G 86 A K 106 1_555 ? ? ? ? ? ? ? 2.786 ? ? metalc20 metalc ? ? A G 82 N7 ? ? ? 1_555 I CO . CO ? ? A G 87 A CO 108 1_555 ? ? ? ? ? ? ? 2.050 ? ? metalc21 metalc ? ? A G 82 "O2'" ? ? ? 1_555 J CO . CO ? ? A G 87 A CO 109 1_555 ? ? ? ? ? ? ? 2.128 ? ? metalc22 metalc ? ? A G 83 N7 ? ? ? 1_555 J CO . CO ? ? A G 88 A CO 109 1_555 ? ? ? ? ? ? ? 1.973 ? ? metalc23 metalc ? ? A G 83 C8 ? ? ? 1_555 J CO . CO ? ? A G 88 A CO 109 1_555 ? ? ? ? ? ? ? 2.794 ? ? metalc24 metalc ? ? C K . K ? ? ? 1_555 Q HOH . O ? ? A K 102 A HOH 209 1_555 ? ? ? ? ? ? ? 2.642 ? ? metalc25 metalc ? ? C K . K ? ? ? 1_555 Q HOH . O ? ? A K 102 A HOH 218 1_555 ? ? ? ? ? ? ? 2.739 ? ? metalc26 metalc ? ? C K . K ? ? ? 1_555 Q HOH . O ? ? A K 102 A HOH 234 1_555 ? ? ? ? ? ? ? 2.990 ? ? metalc27 metalc ? ? D K . K ? ? ? 1_555 Q HOH . O ? ? A K 103 A HOH 261 1_555 ? ? ? ? ? ? ? 2.539 ? ? metalc28 metalc ? ? D K . K ? ? ? 1_555 Q HOH . O ? ? A K 103 A HOH 262 1_555 ? ? ? ? ? ? ? 2.754 ? ? metalc29 metalc ? ? D K . K ? ? ? 1_555 Q HOH . O ? ? A K 103 A HOH 269 1_555 ? ? ? ? ? ? ? 2.768 ? ? metalc30 metalc ? ? G K . K ? ? ? 1_555 Q HOH . O ? ? A K 106 A HOH 273 1_555 ? ? ? ? ? ? ? 2.898 ? ? metalc31 metalc ? ? G K . K ? ? ? 1_555 Q HOH . O ? ? A K 106 A HOH 274 1_555 ? ? ? ? ? ? ? 2.574 ? ? metalc32 metalc ? ? G K . K ? ? ? 1_555 Q HOH . O ? ? A K 106 A HOH 275 1_555 ? ? ? ? ? ? ? 2.622 ? ? metalc33 metalc ? ? I CO . CO ? ? ? 1_555 Q HOH . O ? ? A CO 108 A HOH 201 1_555 ? ? ? ? ? ? ? 2.037 ? ? metalc34 metalc ? ? I CO . CO ? ? ? 1_555 Q HOH . O ? ? A CO 108 A HOH 202 1_555 ? ? ? ? ? ? ? 1.902 ? ? metalc35 metalc ? ? I CO . CO ? ? ? 1_555 Q HOH . O ? ? A CO 108 A HOH 203 1_555 ? ? ? ? ? ? ? 1.965 ? ? metalc36 metalc ? ? J CO . CO ? ? ? 1_555 Q HOH . O ? ? A CO 109 A HOH 214 1_555 ? ? ? ? ? ? ? 1.998 ? ? metalc37 metalc ? ? J CO . CO ? ? ? 1_555 Q HOH . O ? ? A CO 109 A HOH 216 1_555 ? ? ? ? ? ? ? 1.938 ? ? metalc38 metalc ? ? J CO . CO ? ? ? 1_555 Q HOH . O ? ? A CO 109 A HOH 217 1_555 ? ? ? ? ? ? ? 2.105 ? ? metalc39 metalc ? ? K CO . CO ? ? ? 1_555 Q HOH . O ? ? A CO 110 A HOH 208 1_555 ? ? ? ? ? ? ? 1.880 ? ? metalc40 metalc ? ? K CO . CO ? ? ? 1_555 Q HOH . O ? ? A CO 110 A HOH 212 1_555 ? ? ? ? ? ? ? 1.995 ? ? metalc41 metalc ? ? K CO . CO ? ? ? 1_555 Q HOH . O ? ? A CO 110 A HOH 213 1_555 ? ? ? ? ? ? ? 1.953 ? ? metalc42 metalc ? ? K CO . CO ? ? ? 1_555 Q HOH . O ? ? A CO 110 A HOH 220 1_555 ? ? ? ? ? ? ? 2.058 ? ? metalc43 metalc ? ? L CO . CO ? ? ? 1_555 Q HOH . O ? ? A CO 111 A HOH 206 1_555 ? ? ? ? ? ? ? 2.199 ? ? metalc44 metalc ? ? L CO . CO ? ? ? 1_555 Q HOH . O ? ? A CO 111 A HOH 207 1_555 ? ? ? ? ? ? ? 2.268 ? ? metalc45 metalc ? ? L CO . CO ? ? ? 1_555 Q HOH . O ? ? A CO 111 A HOH 210 1_555 ? ? ? ? ? ? ? 2.467 ? ? metalc46 metalc ? ? L CO . CO ? ? ? 1_555 Q HOH . O ? ? A CO 111 A HOH 211 1_555 ? ? ? ? ? ? ? 2.361 ? ? metalc47 metalc ? ? L CO . CO ? ? ? 1_555 Q HOH . O ? ? A CO 111 A HOH 236 1_555 ? ? ? ? ? ? ? 2.459 ? ? metalc48 metalc ? ? M MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 112 A HOH 228 1_555 ? ? ? ? ? ? ? 2.294 ? ? metalc49 metalc ? ? M MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 112 A HOH 229 1_555 ? ? ? ? ? ? ? 2.682 ? ? metalc50 metalc ? ? N MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 113 A HOH 285 1_555 ? ? ? ? ? ? ? 2.719 ? ? metalc51 metalc ? ? N MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 113 A HOH 286 1_555 ? ? ? ? ? ? ? 2.548 ? ? metalc52 metalc ? ? O SR . SR ? ? ? 1_555 Q HOH . O ? ? A SR 114 A HOH 263 1_555 ? ? ? ? ? ? ? 2.324 ? ? metalc53 metalc ? ? O SR . SR ? ? ? 1_555 Q HOH . O ? ? A SR 114 A HOH 266 1_555 ? ? ? ? ? ? ? 2.372 ? ? hydrog1 hydrog ? ? A GTP 1 N1 ? ? ? 1_555 A C 92 N3 ? ? A GTP 6 A C 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A GTP 1 N2 ? ? ? 1_555 A C 92 O2 ? ? A GTP 6 A C 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A GTP 1 O6 ? ? ? 1_555 A C 92 N4 ? ? A GTP 6 A C 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 91 N3 ? ? A G 7 A C 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 91 O2 ? ? A G 7 A C 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 91 N4 ? ? A G 7 A C 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 90 N3 ? ? A G 8 A C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 90 O2 ? ? A G 8 A C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 90 N4 ? ? A G 8 A C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 89 N3 ? ? A A 9 A U 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 89 O4 ? ? A A 9 A U 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 88 N3 ? ? A A 10 A U 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 88 O4 ? ? A A 10 A U 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 87 N1 ? ? A C 11 A G 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 87 O6 ? ? A C 11 A G 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 87 N2 ? ? A C 11 A G 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 86 N1 ? ? A U 12 A A 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 86 N6 ? ? A U 12 A A 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 85 N3 ? ? A G 13 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 85 O2 ? ? A G 13 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 85 N4 ? ? A G 13 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A A 9 N1 ? ? ? 1_555 A A 84 N6 ? ? A A 14 A A 89 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog23 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 83 N1 ? ? A C 16 A G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 83 O6 ? ? A C 16 A G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 83 N2 ? ? A C 16 A G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A A 12 N6 ? ? ? 1_555 A G 40 N3 ? ? A A 17 A G 45 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog27 hydrog ? ? A A 12 N7 ? ? ? 1_555 A G 40 N2 ? ? A A 17 A G 45 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog28 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 18 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 18 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 18 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 14 N1 ? ? ? 1_555 A C 38 N3 ? ? A G 19 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 14 N2 ? ? ? 1_555 A C 38 O2 ? ? A G 19 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 14 O6 ? ? ? 1_555 A C 38 N4 ? ? A G 19 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 34 O6 ? ? A C 20 A G 39 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog35 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 37 N1 ? ? A C 20 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 37 O6 ? ? A C 20 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 37 N2 ? ? A C 20 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A A 17 N1 ? ? ? 1_555 A U 33 N3 ? ? A A 22 A U 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A A 17 N6 ? ? ? 1_555 A U 33 O4 ? ? A A 22 A U 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 32 N1 ? ? A U 23 A A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A U 18 O4 ? ? ? 1_555 A A 32 N6 ? ? A U 23 A A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 19 N1 ? ? ? 1_555 A C 31 N3 ? ? A G 24 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 19 N2 ? ? ? 1_555 A C 31 O2 ? ? A G 24 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 19 O6 ? ? ? 1_555 A C 31 N4 ? ? A G 24 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A A 20 N1 ? ? ? 1_555 A U 30 N3 ? ? A A 25 A U 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A A 20 N6 ? ? ? 1_555 A U 30 O4 ? ? A A 25 A U 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 21 N3 ? ? ? 1_555 A G 29 N1 ? ? A C 26 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 29 O6 ? ? A C 26 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 21 O2 ? ? ? 1_555 A G 29 N2 ? ? A C 26 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 22 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 27 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 22 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 27 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 22 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 27 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A A 23 N1 ? ? ? 1_555 A G 26 N2 ? ? A A 28 A G 31 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog54 hydrog ? ? A G 34 N1 ? ? ? 1_555 A G 37 O6 ? ? A G 39 A G 42 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog55 hydrog ? ? A G 34 N2 ? ? ? 1_555 A G 37 N7 ? ? A G 39 A G 42 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog56 hydrog ? ? A G 42 N1 ? ? ? 1_555 A C 55 N3 ? ? A G 47 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 42 N2 ? ? ? 1_555 A C 55 O2 ? ? A G 47 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 42 O6 ? ? ? 1_555 A C 55 N4 ? ? A G 47 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 43 N3 ? ? ? 1_555 A G 54 N1 ? ? A C 48 A G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A C 43 N4 ? ? ? 1_555 A G 54 O6 ? ? A C 48 A G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A C 43 O2 ? ? ? 1_555 A G 54 N2 ? ? A C 48 A G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A U 44 N3 ? ? ? 1_555 A G 53 O6 ? ? A U 49 A G 58 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog63 hydrog ? ? A U 44 O2 ? ? ? 1_555 A G 53 N1 ? ? A U 49 A G 58 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog64 hydrog ? ? A G 45 N1 ? ? ? 1_555 A C 52 N3 ? ? A G 50 A C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 45 N2 ? ? ? 1_555 A C 52 O2 ? ? A G 50 A C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 45 O6 ? ? ? 1_555 A C 52 N4 ? ? A G 50 A C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 46 N3 ? ? ? 1_555 A G 51 N1 ? ? A C 51 A G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A C 46 N4 ? ? ? 1_555 A G 51 O6 ? ? A C 51 A G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A C 46 O2 ? ? ? 1_555 A G 51 N2 ? ? A C 51 A G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 47 N2 ? ? ? 1_555 A A 50 N7 ? ? A G 52 A A 55 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog71 hydrog ? ? A A 56 N6 ? ? ? 1_555 A G 81 N3 ? ? A A 61 A G 86 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog72 hydrog ? ? A A 56 N7 ? ? ? 1_555 A G 81 N2 ? ? A A 61 A G 86 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog73 hydrog ? ? A A 57 N1 ? ? ? 1_555 A U 80 N3 ? ? A A 62 A U 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A A 57 N6 ? ? ? 1_555 A U 80 O4 ? ? A A 62 A U 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A C 58 N3 ? ? ? 1_555 A G 79 N1 ? ? A C 63 A G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A C 58 N4 ? ? ? 1_555 A G 79 O6 ? ? A C 63 A G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A C 58 O2 ? ? ? 1_555 A G 79 N2 ? ? A C 63 A G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A A 59 N1 ? ? ? 1_555 A U 78 N3 ? ? A A 64 A U 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A A 59 N6 ? ? ? 1_555 A U 78 O4 ? ? A A 64 A U 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 60 N1 ? ? ? 1_555 A C 77 N3 ? ? A G 65 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A G 60 N2 ? ? ? 1_555 A C 77 O2 ? ? A G 65 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A G 60 O6 ? ? ? 1_555 A C 77 N4 ? ? A G 65 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A A 61 N1 ? ? ? 1_555 A U 76 N3 ? ? A A 66 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A A 61 N6 ? ? ? 1_555 A U 76 O4 ? ? A A 66 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A U 62 N3 ? ? ? 1_555 A A 75 N1 ? ? A U 67 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A U 62 O4 ? ? ? 1_555 A A 75 N6 ? ? A U 67 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A G 63 N1 ? ? ? 1_555 A C 74 N3 ? ? A G 68 A C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A G 63 N2 ? ? ? 1_555 A C 74 O2 ? ? A G 68 A C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A G 63 O6 ? ? ? 1_555 A C 74 N4 ? ? A G 68 A C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O2B ? A GTP 1 ? A GTP 6 ? 1_555 K ? D K . ? A K 103 ? 1_555 O1A ? A GTP 1 ? A GTP 6 ? 1_555 59.4 ? 2 O2B ? A GTP 1 ? A GTP 6 ? 1_555 K ? D K . ? A K 103 ? 1_555 O ? Q HOH . ? A HOH 261 ? 1_555 65.8 ? 3 O1A ? A GTP 1 ? A GTP 6 ? 1_555 K ? D K . ? A K 103 ? 1_555 O ? Q HOH . ? A HOH 261 ? 1_555 125.1 ? 4 O2B ? A GTP 1 ? A GTP 6 ? 1_555 K ? D K . ? A K 103 ? 1_555 O ? Q HOH . ? A HOH 262 ? 1_555 65.7 ? 5 O1A ? A GTP 1 ? A GTP 6 ? 1_555 K ? D K . ? A K 103 ? 1_555 O ? Q HOH . ? A HOH 262 ? 1_555 55.1 ? 6 O ? Q HOH . ? A HOH 261 ? 1_555 K ? D K . ? A K 103 ? 1_555 O ? Q HOH . ? A HOH 262 ? 1_555 105.2 ? 7 O2B ? A GTP 1 ? A GTP 6 ? 1_555 K ? D K . ? A K 103 ? 1_555 O ? Q HOH . ? A HOH 269 ? 1_555 65.1 ? 8 O1A ? A GTP 1 ? A GTP 6 ? 1_555 K ? D K . ? A K 103 ? 1_555 O ? Q HOH . ? A HOH 269 ? 1_555 104.3 ? 9 O ? Q HOH . ? A HOH 261 ? 1_555 K ? D K . ? A K 103 ? 1_555 O ? Q HOH . ? A HOH 269 ? 1_555 51.9 ? 10 O ? Q HOH . ? A HOH 262 ? 1_555 K ? D K . ? A K 103 ? 1_555 O ? Q HOH . ? A HOH 269 ? 1_555 57.3 ? 11 O6 ? A GTP 1 ? A GTP 6 ? 1_555 SR ? O SR . ? A SR 114 ? 1_555 O1G ? A GTP 1 ? A GTP 6 ? 1_555 142.3 ? 12 O6 ? A GTP 1 ? A GTP 6 ? 1_555 SR ? O SR . ? A SR 114 ? 1_555 O1B ? A GTP 1 ? A GTP 6 ? 1_555 139.1 ? 13 O1G ? A GTP 1 ? A GTP 6 ? 1_555 SR ? O SR . ? A SR 114 ? 1_555 O1B ? A GTP 1 ? A GTP 6 ? 1_555 65.0 ? 14 O6 ? A GTP 1 ? A GTP 6 ? 1_555 SR ? O SR . ? A SR 114 ? 1_555 N7 ? A GTP 1 ? A GTP 6 ? 1_555 72.9 ? 15 O1G ? A GTP 1 ? A GTP 6 ? 1_555 SR ? O SR . ? A SR 114 ? 1_555 N7 ? A GTP 1 ? A GTP 6 ? 1_555 88.1 ? 16 O1B ? A GTP 1 ? A GTP 6 ? 1_555 SR ? O SR . ? A SR 114 ? 1_555 N7 ? A GTP 1 ? A GTP 6 ? 1_555 81.0 ? 17 O6 ? A GTP 1 ? A GTP 6 ? 1_555 SR ? O SR . ? A SR 114 ? 1_555 O ? Q HOH . ? A HOH 263 ? 1_555 58.0 ? 18 O1G ? A GTP 1 ? A GTP 6 ? 1_555 SR ? O SR . ? A SR 114 ? 1_555 O ? Q HOH . ? A HOH 263 ? 1_555 154.3 ? 19 O1B ? A GTP 1 ? A GTP 6 ? 1_555 SR ? O SR . ? A SR 114 ? 1_555 O ? Q HOH . ? A HOH 263 ? 1_555 111.2 ? 20 N7 ? A GTP 1 ? A GTP 6 ? 1_555 SR ? O SR . ? A SR 114 ? 1_555 O ? Q HOH . ? A HOH 263 ? 1_555 117.0 ? 21 O6 ? A GTP 1 ? A GTP 6 ? 1_555 SR ? O SR . ? A SR 114 ? 1_555 O ? Q HOH . ? A HOH 266 ? 1_555 147.7 ? 22 O1G ? A GTP 1 ? A GTP 6 ? 1_555 SR ? O SR . ? A SR 114 ? 1_555 O ? Q HOH . ? A HOH 266 ? 1_555 63.7 ? 23 O1B ? A GTP 1 ? A GTP 6 ? 1_555 SR ? O SR . ? A SR 114 ? 1_555 O ? Q HOH . ? A HOH 266 ? 1_555 58.9 ? 24 N7 ? A GTP 1 ? A GTP 6 ? 1_555 SR ? O SR . ? A SR 114 ? 1_555 O ? Q HOH . ? A HOH 266 ? 1_555 137.5 ? 25 O ? Q HOH . ? A HOH 263 ? 1_555 SR ? O SR . ? A SR 114 ? 1_555 O ? Q HOH . ? A HOH 266 ? 1_555 92.0 ? 26 N7 ? A A 9 ? A A 14 ? 1_555 CO ? K CO . ? A CO 110 ? 1_555 N7 ? A G 40 ? A G 45 ? 1_555 101.5 ? 27 N7 ? A A 9 ? A A 14 ? 1_555 CO ? K CO . ? A CO 110 ? 1_555 O ? Q HOH . ? A HOH 208 ? 1_555 171.6 ? 28 N7 ? A G 40 ? A G 45 ? 1_555 CO ? K CO . ? A CO 110 ? 1_555 O ? Q HOH . ? A HOH 208 ? 1_555 83.0 ? 29 N7 ? A A 9 ? A A 14 ? 1_555 CO ? K CO . ? A CO 110 ? 1_555 O ? Q HOH . ? A HOH 212 ? 1_555 94.8 ? 30 N7 ? A G 40 ? A G 45 ? 1_555 CO ? K CO . ? A CO 110 ? 1_555 O ? Q HOH . ? A HOH 212 ? 1_555 85.9 ? 31 O ? Q HOH . ? A HOH 208 ? 1_555 CO ? K CO . ? A CO 110 ? 1_555 O ? Q HOH . ? A HOH 212 ? 1_555 78.3 ? 32 N7 ? A A 9 ? A A 14 ? 1_555 CO ? K CO . ? A CO 110 ? 1_555 O ? Q HOH . ? A HOH 213 ? 1_555 94.6 ? 33 N7 ? A G 40 ? A G 45 ? 1_555 CO ? K CO . ? A CO 110 ? 1_555 O ? Q HOH . ? A HOH 213 ? 1_555 160.6 ? 34 O ? Q HOH . ? A HOH 208 ? 1_555 CO ? K CO . ? A CO 110 ? 1_555 O ? Q HOH . ? A HOH 213 ? 1_555 79.7 ? 35 O ? Q HOH . ? A HOH 212 ? 1_555 CO ? K CO . ? A CO 110 ? 1_555 O ? Q HOH . ? A HOH 213 ? 1_555 82.0 ? 36 N7 ? A A 9 ? A A 14 ? 1_555 CO ? K CO . ? A CO 110 ? 1_555 O ? Q HOH . ? A HOH 220 ? 1_555 95.7 ? 37 N7 ? A G 40 ? A G 45 ? 1_555 CO ? K CO . ? A CO 110 ? 1_555 O ? Q HOH . ? A HOH 220 ? 1_555 110.5 ? 38 O ? Q HOH . ? A HOH 208 ? 1_555 CO ? K CO . ? A CO 110 ? 1_555 O ? Q HOH . ? A HOH 220 ? 1_555 89.3 ? 39 O ? Q HOH . ? A HOH 212 ? 1_555 CO ? K CO . ? A CO 110 ? 1_555 O ? Q HOH . ? A HOH 220 ? 1_555 158.2 ? 40 O ? Q HOH . ? A HOH 213 ? 1_555 CO ? K CO . ? A CO 110 ? 1_555 O ? Q HOH . ? A HOH 220 ? 1_555 78.2 ? 41 O6 ? A G 10 ? A G 15 ? 1_555 MG ? M MG . ? A MG 112 ? 1_555 OP2 ? A A 36 ? A A 41 ? 1_555 91.3 ? 42 O6 ? A G 10 ? A G 15 ? 1_555 MG ? M MG . ? A MG 112 ? 1_555 O ? Q HOH . ? A HOH 228 ? 1_555 67.5 ? 43 OP2 ? A A 36 ? A A 41 ? 1_555 MG ? M MG . ? A MG 112 ? 1_555 O ? Q HOH . ? A HOH 228 ? 1_555 74.9 ? 44 O6 ? A G 10 ? A G 15 ? 1_555 MG ? M MG . ? A MG 112 ? 1_555 O ? Q HOH . ? A HOH 229 ? 1_555 58.0 ? 45 OP2 ? A A 36 ? A A 41 ? 1_555 MG ? M MG . ? A MG 112 ? 1_555 O ? Q HOH . ? A HOH 229 ? 1_555 113.1 ? 46 O ? Q HOH . ? A HOH 228 ? 1_555 MG ? M MG . ? A MG 112 ? 1_555 O ? Q HOH . ? A HOH 229 ? 1_555 124.7 ? 47 O6 ? A G 13 ? A G 18 ? 1_555 CO ? L CO . ? A CO 111 ? 1_555 O ? Q HOH . ? A HOH 206 ? 1_555 84.7 ? 48 O6 ? A G 13 ? A G 18 ? 1_555 CO ? L CO . ? A CO 111 ? 1_555 O ? Q HOH . ? A HOH 207 ? 1_555 136.9 ? 49 O ? Q HOH . ? A HOH 206 ? 1_555 CO ? L CO . ? A CO 111 ? 1_555 O ? Q HOH . ? A HOH 207 ? 1_555 85.4 ? 50 O6 ? A G 13 ? A G 18 ? 1_555 CO ? L CO . ? A CO 111 ? 1_555 O ? Q HOH . ? A HOH 210 ? 1_555 69.6 ? 51 O ? Q HOH . ? A HOH 206 ? 1_555 CO ? L CO . ? A CO 111 ? 1_555 O ? Q HOH . ? A HOH 210 ? 1_555 71.3 ? 52 O ? Q HOH . ? A HOH 207 ? 1_555 CO ? L CO . ? A CO 111 ? 1_555 O ? Q HOH . ? A HOH 210 ? 1_555 143.8 ? 53 O6 ? A G 13 ? A G 18 ? 1_555 CO ? L CO . ? A CO 111 ? 1_555 O ? Q HOH . ? A HOH 211 ? 1_555 71.8 ? 54 O ? Q HOH . ? A HOH 206 ? 1_555 CO ? L CO . ? A CO 111 ? 1_555 O ? Q HOH . ? A HOH 211 ? 1_555 135.6 ? 55 O ? Q HOH . ? A HOH 207 ? 1_555 CO ? L CO . ? A CO 111 ? 1_555 O ? Q HOH . ? A HOH 211 ? 1_555 136.9 ? 56 O ? Q HOH . ? A HOH 210 ? 1_555 CO ? L CO . ? A CO 111 ? 1_555 O ? Q HOH . ? A HOH 211 ? 1_555 65.5 ? 57 O6 ? A G 13 ? A G 18 ? 1_555 CO ? L CO . ? A CO 111 ? 1_555 O ? Q HOH . ? A HOH 236 ? 1_555 108.4 ? 58 O ? Q HOH . ? A HOH 206 ? 1_555 CO ? L CO . ? A CO 111 ? 1_555 O ? Q HOH . ? A HOH 236 ? 1_555 152.2 ? 59 O ? Q HOH . ? A HOH 207 ? 1_555 CO ? L CO . ? A CO 111 ? 1_555 O ? Q HOH . ? A HOH 236 ? 1_555 68.2 ? 60 O ? Q HOH . ? A HOH 210 ? 1_555 CO ? L CO . ? A CO 111 ? 1_555 O ? Q HOH . ? A HOH 236 ? 1_555 135.9 ? 61 O ? Q HOH . ? A HOH 211 ? 1_555 CO ? L CO . ? A CO 111 ? 1_555 O ? Q HOH . ? A HOH 236 ? 1_555 72.1 ? 62 "O2'" ? A G 41 ? A G 46 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 N7 ? A G 42 ? A G 47 ? 1_555 92.4 ? 63 "O2'" ? A G 41 ? A G 46 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 N7 ? A G 82 ? A G 87 ? 1_555 88.5 ? 64 N7 ? A G 42 ? A G 47 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 N7 ? A G 82 ? A G 87 ? 1_555 177.5 ? 65 "O2'" ? A G 41 ? A G 46 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? Q HOH . ? A HOH 201 ? 1_555 78.4 ? 66 N7 ? A G 42 ? A G 47 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? Q HOH . ? A HOH 201 ? 1_555 90.4 ? 67 N7 ? A G 82 ? A G 87 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? Q HOH . ? A HOH 201 ? 1_555 92.0 ? 68 "O2'" ? A G 41 ? A G 46 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? Q HOH . ? A HOH 202 ? 1_555 90.6 ? 69 N7 ? A G 42 ? A G 47 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? Q HOH . ? A HOH 202 ? 1_555 77.8 ? 70 N7 ? A G 82 ? A G 87 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? Q HOH . ? A HOH 202 ? 1_555 99.8 ? 71 O ? Q HOH . ? A HOH 201 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? Q HOH . ? A HOH 202 ? 1_555 163.6 ? 72 "O2'" ? A G 41 ? A G 46 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? Q HOH . ? A HOH 203 ? 1_555 169.7 ? 73 N7 ? A G 42 ? A G 47 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? Q HOH . ? A HOH 203 ? 1_555 78.6 ? 74 N7 ? A G 82 ? A G 87 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? Q HOH . ? A HOH 203 ? 1_555 100.6 ? 75 O ? Q HOH . ? A HOH 201 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? Q HOH . ? A HOH 203 ? 1_555 96.4 ? 76 O ? Q HOH . ? A HOH 202 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? Q HOH . ? A HOH 203 ? 1_555 92.5 ? 77 N7 ? A G 41 ? A G 46 ? 1_555 CO ? J CO . ? A CO 109 ? 1_555 "O2'" ? A G 82 ? A G 87 ? 1_555 90.1 ? 78 N7 ? A G 41 ? A G 46 ? 1_555 CO ? J CO . ? A CO 109 ? 1_555 N7 ? A G 83 ? A G 88 ? 1_555 172.8 ? 79 "O2'" ? A G 82 ? A G 87 ? 1_555 CO ? J CO . ? A CO 109 ? 1_555 N7 ? A G 83 ? A G 88 ? 1_555 96.5 ? 80 N7 ? A G 41 ? A G 46 ? 1_555 CO ? J CO . ? A CO 109 ? 1_555 C8 ? A G 83 ? A G 88 ? 1_555 159.5 ? 81 "O2'" ? A G 82 ? A G 87 ? 1_555 CO ? J CO . ? A CO 109 ? 1_555 C8 ? A G 83 ? A G 88 ? 1_555 73.1 ? 82 N7 ? A G 83 ? A G 88 ? 1_555 CO ? J CO . ? A CO 109 ? 1_555 C8 ? A G 83 ? A G 88 ? 1_555 25.2 ? 83 N7 ? A G 41 ? A G 46 ? 1_555 CO ? J CO . ? A CO 109 ? 1_555 O ? Q HOH . ? A HOH 214 ? 1_555 92.0 ? 84 "O2'" ? A G 82 ? A G 87 ? 1_555 CO ? J CO . ? A CO 109 ? 1_555 O ? Q HOH . ? A HOH 214 ? 1_555 93.1 ? 85 N7 ? A G 83 ? A G 88 ? 1_555 CO ? J CO . ? A CO 109 ? 1_555 O ? Q HOH . ? A HOH 214 ? 1_555 85.0 ? 86 C8 ? A G 83 ? A G 88 ? 1_555 CO ? J CO . ? A CO 109 ? 1_555 O ? Q HOH . ? A HOH 214 ? 1_555 77.5 ? 87 N7 ? A G 41 ? A G 46 ? 1_555 CO ? J CO . ? A CO 109 ? 1_555 O ? Q HOH . ? A HOH 216 ? 1_555 97.3 ? 88 "O2'" ? A G 82 ? A G 87 ? 1_555 CO ? J CO . ? A CO 109 ? 1_555 O ? Q HOH . ? A HOH 216 ? 1_555 93.2 ? 89 N7 ? A G 83 ? A G 88 ? 1_555 CO ? J CO . ? A CO 109 ? 1_555 O ? Q HOH . ? A HOH 216 ? 1_555 85.0 ? 90 C8 ? A G 83 ? A G 88 ? 1_555 CO ? J CO . ? A CO 109 ? 1_555 O ? Q HOH . ? A HOH 216 ? 1_555 95.5 ? 91 O ? Q HOH . ? A HOH 214 ? 1_555 CO ? J CO . ? A CO 109 ? 1_555 O ? Q HOH . ? A HOH 216 ? 1_555 168.7 ? 92 N7 ? A G 41 ? A G 46 ? 1_555 CO ? J CO . ? A CO 109 ? 1_555 O ? Q HOH . ? A HOH 217 ? 1_555 84.2 ? 93 "O2'" ? A G 82 ? A G 87 ? 1_555 CO ? J CO . ? A CO 109 ? 1_555 O ? Q HOH . ? A HOH 217 ? 1_555 173.4 ? 94 N7 ? A G 83 ? A G 88 ? 1_555 CO ? J CO . ? A CO 109 ? 1_555 O ? Q HOH . ? A HOH 217 ? 1_555 89.0 ? 95 C8 ? A G 83 ? A G 88 ? 1_555 CO ? J CO . ? A CO 109 ? 1_555 O ? Q HOH . ? A HOH 217 ? 1_555 111.7 ? 96 O ? Q HOH . ? A HOH 214 ? 1_555 CO ? J CO . ? A CO 109 ? 1_555 O ? Q HOH . ? A HOH 217 ? 1_555 83.8 ? 97 O ? Q HOH . ? A HOH 216 ? 1_555 CO ? J CO . ? A CO 109 ? 1_555 O ? Q HOH . ? A HOH 217 ? 1_555 90.9 ? 98 O4 ? A U 44 ? A U 49 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 53 ? A G 58 ? 1_555 80.9 ? 99 O4 ? A U 44 ? A U 49 ? 1_555 K ? C K . ? A K 102 ? 1_555 O ? Q HOH . ? A HOH 209 ? 1_555 147.2 ? 100 O6 ? A G 53 ? A G 58 ? 1_555 K ? C K . ? A K 102 ? 1_555 O ? Q HOH . ? A HOH 209 ? 1_555 66.3 ? 101 O4 ? A U 44 ? A U 49 ? 1_555 K ? C K . ? A K 102 ? 1_555 O ? Q HOH . ? A HOH 218 ? 1_555 92.5 ? 102 O6 ? A G 53 ? A G 58 ? 1_555 K ? C K . ? A K 102 ? 1_555 O ? Q HOH . ? A HOH 218 ? 1_555 63.4 ? 103 O ? Q HOH . ? A HOH 209 ? 1_555 K ? C K . ? A K 102 ? 1_555 O ? Q HOH . ? A HOH 218 ? 1_555 72.1 ? 104 O4 ? A U 44 ? A U 49 ? 1_555 K ? C K . ? A K 102 ? 1_555 O ? Q HOH . ? A HOH 234 ? 1_555 84.5 ? 105 O6 ? A G 53 ? A G 58 ? 1_555 K ? C K . ? A K 102 ? 1_555 O ? Q HOH . ? A HOH 234 ? 1_555 58.0 ? 106 O ? Q HOH . ? A HOH 209 ? 1_555 K ? C K . ? A K 102 ? 1_555 O ? Q HOH . ? A HOH 234 ? 1_555 79.6 ? 107 O ? Q HOH . ? A HOH 218 ? 1_555 K ? C K . ? A K 102 ? 1_555 O ? Q HOH . ? A HOH 234 ? 1_555 121.0 ? 108 "O3'" ? A C 46 ? A C 51 ? 1_555 K ? B K . ? A K 101 ? 1_555 OP1 ? A G 47 ? A G 52 ? 1_555 43.6 ? 109 O6 ? A G 81 ? A G 86 ? 1_555 K ? G K . ? A K 106 ? 1_555 O ? Q HOH . ? A HOH 273 ? 1_555 66.7 ? 110 O6 ? A G 81 ? A G 86 ? 1_555 K ? G K . ? A K 106 ? 1_555 O ? Q HOH . ? A HOH 274 ? 1_555 97.8 ? 111 O ? Q HOH . ? A HOH 273 ? 1_555 K ? G K . ? A K 106 ? 1_555 O ? Q HOH . ? A HOH 274 ? 1_555 79.7 ? 112 O6 ? A G 81 ? A G 86 ? 1_555 K ? G K . ? A K 106 ? 1_555 O ? Q HOH . ? A HOH 275 ? 1_555 56.0 ? 113 O ? Q HOH . ? A HOH 273 ? 1_555 K ? G K . ? A K 106 ? 1_555 O ? Q HOH . ? A HOH 275 ? 1_555 47.4 ? 114 O ? Q HOH . ? A HOH 274 ? 1_555 K ? G K . ? A K 106 ? 1_555 O ? Q HOH . ? A HOH 275 ? 1_555 46.7 ? 115 O ? Q HOH . ? A HOH 285 ? 1_555 MG ? N MG . ? A MG 113 ? 1_555 O ? Q HOH . ? A HOH 286 ? 1_555 157.4 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A K 101 ? 4 'BINDING SITE FOR RESIDUE K A 101' AC2 Software A K 102 ? 5 'BINDING SITE FOR RESIDUE K A 102' AC3 Software A K 103 ? 4 'BINDING SITE FOR RESIDUE K A 103' AC4 Software A K 105 ? 1 'BINDING SITE FOR RESIDUE K A 105' AC5 Software A K 106 ? 4 'BINDING SITE FOR RESIDUE K A 106' AC6 Software A CO 108 ? 7 'BINDING SITE FOR RESIDUE CO A 108' AC7 Software A CO 109 ? 6 'BINDING SITE FOR RESIDUE CO A 109' AC8 Software A CO 110 ? 6 'BINDING SITE FOR RESIDUE CO A 110' AC9 Software A CO 111 ? 6 'BINDING SITE FOR RESIDUE CO A 111' BC1 Software A MG 112 ? 4 'BINDING SITE FOR RESIDUE MG A 112' BC2 Software A MG 113 ? 2 'BINDING SITE FOR RESIDUE MG A 113' BC3 Software A SR 114 ? 4 'BINDING SITE FOR RESIDUE SR A 114' BC4 Software A GOL 115 ? 2 'BINDING SITE FOR RESIDUE GOL A 115' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 A A 20 ? A A 25 . ? 3_555 ? 2 AC1 4 C A 46 ? C A 51 . ? 1_555 ? 3 AC1 4 G A 47 ? G A 52 . ? 1_555 ? 4 AC1 4 A A 56 ? A A 61 . ? 2_565 ? 5 AC2 5 U A 44 ? U A 49 . ? 1_555 ? 6 AC2 5 G A 53 ? G A 58 . ? 1_555 ? 7 AC2 5 HOH Q . ? HOH A 209 . ? 1_555 ? 8 AC2 5 HOH Q . ? HOH A 218 . ? 1_555 ? 9 AC2 5 HOH Q . ? HOH A 234 . ? 1_555 ? 10 AC3 4 GTP A 1 ? GTP A 6 . ? 1_555 ? 11 AC3 4 HOH Q . ? HOH A 261 . ? 1_555 ? 12 AC3 4 HOH Q . ? HOH A 262 . ? 1_555 ? 13 AC3 4 HOH Q . ? HOH A 269 . ? 1_555 ? 14 AC4 1 G A 24 ? G A 29 . ? 4_565 ? 15 AC5 4 G A 81 ? G A 86 . ? 1_555 ? 16 AC5 4 HOH Q . ? HOH A 273 . ? 1_555 ? 17 AC5 4 HOH Q . ? HOH A 274 . ? 1_555 ? 18 AC5 4 HOH Q . ? HOH A 275 . ? 1_555 ? 19 AC6 7 G A 41 ? G A 46 . ? 1_555 ? 20 AC6 7 G A 42 ? G A 47 . ? 1_555 ? 21 AC6 7 G A 81 ? G A 86 . ? 1_555 ? 22 AC6 7 G A 82 ? G A 87 . ? 1_555 ? 23 AC6 7 HOH Q . ? HOH A 201 . ? 1_555 ? 24 AC6 7 HOH Q . ? HOH A 202 . ? 1_555 ? 25 AC6 7 HOH Q . ? HOH A 203 . ? 1_555 ? 26 AC7 6 G A 41 ? G A 46 . ? 1_555 ? 27 AC7 6 G A 82 ? G A 87 . ? 1_555 ? 28 AC7 6 G A 83 ? G A 88 . ? 1_555 ? 29 AC7 6 HOH Q . ? HOH A 214 . ? 1_555 ? 30 AC7 6 HOH Q . ? HOH A 216 . ? 1_555 ? 31 AC7 6 HOH Q . ? HOH A 217 . ? 1_555 ? 32 AC8 6 A A 9 ? A A 14 . ? 1_555 ? 33 AC8 6 G A 40 ? G A 45 . ? 1_555 ? 34 AC8 6 HOH Q . ? HOH A 208 . ? 1_555 ? 35 AC8 6 HOH Q . ? HOH A 212 . ? 1_555 ? 36 AC8 6 HOH Q . ? HOH A 213 . ? 1_555 ? 37 AC8 6 HOH Q . ? HOH A 220 . ? 1_555 ? 38 AC9 6 G A 13 ? G A 18 . ? 1_555 ? 39 AC9 6 HOH Q . ? HOH A 206 . ? 1_555 ? 40 AC9 6 HOH Q . ? HOH A 207 . ? 1_555 ? 41 AC9 6 HOH Q . ? HOH A 210 . ? 1_555 ? 42 AC9 6 HOH Q . ? HOH A 211 . ? 1_555 ? 43 AC9 6 HOH Q . ? HOH A 236 . ? 1_555 ? 44 BC1 4 G A 10 ? G A 15 . ? 1_555 ? 45 BC1 4 A A 36 ? A A 41 . ? 1_555 ? 46 BC1 4 HOH Q . ? HOH A 228 . ? 1_555 ? 47 BC1 4 HOH Q . ? HOH A 229 . ? 1_555 ? 48 BC2 2 HOH Q . ? HOH A 285 . ? 1_555 ? 49 BC2 2 HOH Q . ? HOH A 286 . ? 1_555 ? 50 BC3 4 GTP A 1 ? GTP A 6 . ? 1_555 ? 51 BC3 4 GTP A 1 ? GTP A 6 . ? 6_566 ? 52 BC3 4 HOH Q . ? HOH A 263 . ? 1_555 ? 53 BC3 4 HOH Q . ? HOH A 266 . ? 1_555 ? 54 BC4 2 G A 47 ? G A 52 . ? 1_555 ? 55 BC4 2 HOH Q . ? HOH A 283 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 274 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 275 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.06 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 N1 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 G _pdbx_validate_symm_contact.auth_seq_id_1 29 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 "O2'" _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 A _pdbx_validate_symm_contact.auth_seq_id_2 78 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_655 _pdbx_validate_symm_contact.dist 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N3 A G 29 ? ? C4 A G 29 ? ? C5 A G 29 ? ? 133.97 128.60 5.37 0.50 N 2 1 N3 A G 29 ? ? C4 A G 29 ? ? N9 A G 29 ? ? 119.06 126.00 -6.94 0.60 N 3 1 C6 A G 29 ? ? C5 A G 29 ? ? N7 A G 29 ? ? 134.18 130.40 3.78 0.60 N 4 1 C8 A G 29 ? ? N9 A G 29 ? ? "C1'" A G 29 ? ? 138.53 127.00 11.53 1.30 N 5 1 C4 A G 29 ? ? N9 A G 29 ? ? "C1'" A G 29 ? ? 114.18 126.50 -12.32 1.30 N 6 1 "O4'" A U 70 ? ? "C1'" A U 70 ? ? N1 A U 70 ? ? 113.68 108.50 5.18 0.70 N 7 1 C2 A U 70 ? ? N1 A U 70 ? ? "C1'" A U 70 ? ? 125.73 117.70 8.03 1.20 N # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id GTP _pdbx_struct_mod_residue.label_seq_id 1 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id GTP _pdbx_struct_mod_residue.auth_seq_id 6 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id G _pdbx_struct_mod_residue.details "GUANOSINE-5'-TRIPHOSPHATE" # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id U _pdbx_unobs_or_zero_occ_residues.auth_seq_id 71 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id U _pdbx_unobs_or_zero_occ_residues.label_seq_id 66 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 CO CO CO N N 73 G OP3 O N N 74 G P P N N 75 G OP1 O N N 76 G OP2 O N N 77 G "O5'" O N N 78 G "C5'" C N N 79 G "C4'" C N R 80 G "O4'" O N N 81 G "C3'" C N S 82 G "O3'" O N N 83 G "C2'" C N R 84 G "O2'" O N N 85 G "C1'" C N R 86 G N9 N Y N 87 G C8 C Y N 88 G N7 N Y N 89 G C5 C Y N 90 G C6 C N N 91 G O6 O N N 92 G N1 N N N 93 G C2 C N N 94 G N2 N N N 95 G N3 N N N 96 G C4 C Y N 97 G HOP3 H N N 98 G HOP2 H N N 99 G "H5'" H N N 100 G "H5''" H N N 101 G "H4'" H N N 102 G "H3'" H N N 103 G "HO3'" H N N 104 G "H2'" H N N 105 G "HO2'" H N N 106 G "H1'" H N N 107 G H8 H N N 108 G H1 H N N 109 G H21 H N N 110 G H22 H N N 111 GOL C1 C N N 112 GOL O1 O N N 113 GOL C2 C N N 114 GOL O2 O N N 115 GOL C3 C N N 116 GOL O3 O N N 117 GOL H11 H N N 118 GOL H12 H N N 119 GOL HO1 H N N 120 GOL H2 H N N 121 GOL HO2 H N N 122 GOL H31 H N N 123 GOL H32 H N N 124 GOL HO3 H N N 125 GTP PG P N N 126 GTP O1G O N N 127 GTP O2G O N N 128 GTP O3G O N N 129 GTP O3B O N N 130 GTP PB P N N 131 GTP O1B O N N 132 GTP O2B O N N 133 GTP O3A O N N 134 GTP PA P N N 135 GTP O1A O N N 136 GTP O2A O N N 137 GTP "O5'" O N N 138 GTP "C5'" C N N 139 GTP "C4'" C N R 140 GTP "O4'" O N N 141 GTP "C3'" C N S 142 GTP "O3'" O N N 143 GTP "C2'" C N R 144 GTP "O2'" O N N 145 GTP "C1'" C N R 146 GTP N9 N Y N 147 GTP C8 C Y N 148 GTP N7 N Y N 149 GTP C5 C Y N 150 GTP C6 C N N 151 GTP O6 O N N 152 GTP N1 N N N 153 GTP C2 C N N 154 GTP N2 N N N 155 GTP N3 N N N 156 GTP C4 C Y N 157 GTP HOG2 H N N 158 GTP HOG3 H N N 159 GTP HOB2 H N N 160 GTP HOA2 H N N 161 GTP "H5'" H N N 162 GTP "H5''" H N N 163 GTP "H4'" H N N 164 GTP "H3'" H N N 165 GTP "HO3'" H N N 166 GTP "H2'" H N N 167 GTP "HO2'" H N N 168 GTP "H1'" H N N 169 GTP H8 H N N 170 GTP HN1 H N N 171 GTP HN21 H N N 172 GTP HN22 H N N 173 HOH O O N N 174 HOH H1 H N N 175 HOH H2 H N N 176 K K K N N 177 MG MG MG N N 178 SR SR SR N N 179 U OP3 O N N 180 U P P N N 181 U OP1 O N N 182 U OP2 O N N 183 U "O5'" O N N 184 U "C5'" C N N 185 U "C4'" C N R 186 U "O4'" O N N 187 U "C3'" C N S 188 U "O3'" O N N 189 U "C2'" C N R 190 U "O2'" O N N 191 U "C1'" C N R 192 U N1 N N N 193 U C2 C N N 194 U O2 O N N 195 U N3 N N N 196 U C4 C N N 197 U O4 O N N 198 U C5 C N N 199 U C6 C N N 200 U HOP3 H N N 201 U HOP2 H N N 202 U "H5'" H N N 203 U "H5''" H N N 204 U "H4'" H N N 205 U "H3'" H N N 206 U "HO3'" H N N 207 U "H2'" H N N 208 U "HO2'" H N N 209 U "H1'" H N N 210 U H3 H N N 211 U H5 H N N 212 U H6 H N N 213 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GOL C1 O1 sing N N 116 GOL C1 C2 sing N N 117 GOL C1 H11 sing N N 118 GOL C1 H12 sing N N 119 GOL O1 HO1 sing N N 120 GOL C2 O2 sing N N 121 GOL C2 C3 sing N N 122 GOL C2 H2 sing N N 123 GOL O2 HO2 sing N N 124 GOL C3 O3 sing N N 125 GOL C3 H31 sing N N 126 GOL C3 H32 sing N N 127 GOL O3 HO3 sing N N 128 GTP PG O1G doub N N 129 GTP PG O2G sing N N 130 GTP PG O3G sing N N 131 GTP PG O3B sing N N 132 GTP O2G HOG2 sing N N 133 GTP O3G HOG3 sing N N 134 GTP O3B PB sing N N 135 GTP PB O1B doub N N 136 GTP PB O2B sing N N 137 GTP PB O3A sing N N 138 GTP O2B HOB2 sing N N 139 GTP O3A PA sing N N 140 GTP PA O1A doub N N 141 GTP PA O2A sing N N 142 GTP PA "O5'" sing N N 143 GTP O2A HOA2 sing N N 144 GTP "O5'" "C5'" sing N N 145 GTP "C5'" "C4'" sing N N 146 GTP "C5'" "H5'" sing N N 147 GTP "C5'" "H5''" sing N N 148 GTP "C4'" "O4'" sing N N 149 GTP "C4'" "C3'" sing N N 150 GTP "C4'" "H4'" sing N N 151 GTP "O4'" "C1'" sing N N 152 GTP "C3'" "O3'" sing N N 153 GTP "C3'" "C2'" sing N N 154 GTP "C3'" "H3'" sing N N 155 GTP "O3'" "HO3'" sing N N 156 GTP "C2'" "O2'" sing N N 157 GTP "C2'" "C1'" sing N N 158 GTP "C2'" "H2'" sing N N 159 GTP "O2'" "HO2'" sing N N 160 GTP "C1'" N9 sing N N 161 GTP "C1'" "H1'" sing N N 162 GTP N9 C8 sing Y N 163 GTP N9 C4 sing Y N 164 GTP C8 N7 doub Y N 165 GTP C8 H8 sing N N 166 GTP N7 C5 sing Y N 167 GTP C5 C6 sing N N 168 GTP C5 C4 doub Y N 169 GTP C6 O6 doub N N 170 GTP C6 N1 sing N N 171 GTP N1 C2 sing N N 172 GTP N1 HN1 sing N N 173 GTP C2 N2 sing N N 174 GTP C2 N3 doub N N 175 GTP N2 HN21 sing N N 176 GTP N2 HN22 sing N N 177 GTP N3 C4 sing N N 178 HOH O H1 sing N N 179 HOH O H2 sing N N 180 U OP3 P sing N N 181 U OP3 HOP3 sing N N 182 U P OP1 doub N N 183 U P OP2 sing N N 184 U P "O5'" sing N N 185 U OP2 HOP2 sing N N 186 U "O5'" "C5'" sing N N 187 U "C5'" "C4'" sing N N 188 U "C5'" "H5'" sing N N 189 U "C5'" "H5''" sing N N 190 U "C4'" "O4'" sing N N 191 U "C4'" "C3'" sing N N 192 U "C4'" "H4'" sing N N 193 U "O4'" "C1'" sing N N 194 U "C3'" "O3'" sing N N 195 U "C3'" "C2'" sing N N 196 U "C3'" "H3'" sing N N 197 U "O3'" "HO3'" sing N N 198 U "C2'" "O2'" sing N N 199 U "C2'" "C1'" sing N N 200 U "C2'" "H2'" sing N N 201 U "O2'" "HO2'" sing N N 202 U "C1'" N1 sing N N 203 U "C1'" "H1'" sing N N 204 U N1 C2 sing N N 205 U N1 C6 sing N N 206 U C2 O2 doub N N 207 U C2 N3 sing N N 208 U N3 C4 sing N N 209 U N3 H3 sing N N 210 U C4 O4 doub N N 211 U C4 C5 sing N N 212 U C5 C6 doub N N 213 U C5 H5 sing N N 214 U C6 H6 sing N N 215 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4RUM 'double helix' 4RUM 'a-form double helix' 4RUM 'hairpin loop' 4RUM tetraloop 4RUM 'bulge loop' 4RUM 'mismatched base pair' 4RUM 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A GTP 1 1_555 A C 92 1_555 -0.370 -0.091 0.312 4.591 1.066 3.036 1 A_GTP6:C97_A A 6 ? A 97 ? 19 1 1 A G 2 1_555 A C 91 1_555 -0.421 -0.197 0.184 -1.852 -12.055 0.202 2 A_G7:C96_A A 7 ? A 96 ? 19 1 1 A G 3 1_555 A C 90 1_555 -0.954 -0.182 0.053 -9.042 -11.001 5.294 3 A_G8:C95_A A 8 ? A 95 ? 19 1 1 A A 4 1_555 A U 89 1_555 -0.033 -0.461 0.035 -7.470 -5.797 -3.365 4 A_A9:U94_A A 9 ? A 94 ? 20 1 1 A A 5 1_555 A U 88 1_555 -0.396 -0.424 -0.123 -2.021 -14.808 -4.474 5 A_A10:U93_A A 10 ? A 93 ? 20 1 1 A C 6 1_555 A G 87 1_555 -0.206 -0.422 -0.037 5.109 -14.529 -0.465 6 A_C11:G92_A A 11 ? A 92 ? 19 1 1 A U 7 1_555 A A 86 1_555 0.128 -0.505 0.248 -4.641 -12.687 1.031 7 A_U12:A91_A A 12 ? A 91 ? 20 1 1 A G 8 1_555 A C 85 1_555 -0.233 -0.364 0.437 -6.451 -11.009 -2.813 8 A_G13:C90_A A 13 ? A 90 ? 19 1 1 A A 9 1_555 A A 84 1_555 2.497 1.596 0.188 4.134 -3.337 10.167 9 A_A14:A89_A A 14 ? A 89 ? ? 1 1 A C 11 1_555 A G 83 1_555 0.389 -0.078 -0.011 -4.296 15.754 2.737 10 A_C16:G88_A A 16 ? A 88 ? 19 1 1 A A 12 1_555 A G 40 1_555 -6.759 -3.882 0.092 -1.532 -13.516 2.616 11 A_A17:G45_A A 17 ? A 45 ? 11 9 1 A G 13 1_555 A C 39 1_555 -0.108 -0.315 -0.148 -3.674 -7.886 -3.278 12 A_G18:C44_A A 18 ? A 44 ? 19 1 1 A G 14 1_555 A C 38 1_555 0.002 -0.566 0.021 6.222 -1.942 -3.754 13 A_G19:C43_A A 19 ? A 43 ? 19 1 1 A C 15 1_555 A G 37 1_555 -0.323 -0.390 -0.096 12.237 -3.197 -2.214 14 A_C20:G42_A A 20 ? A 42 ? 19 1 1 A A 17 1_555 A U 33 1_555 0.222 -0.168 0.136 6.153 -18.508 0.629 15 A_A22:U38_A A 22 ? A 38 ? 20 1 1 A U 18 1_555 A A 32 1_555 -0.329 -0.239 0.194 6.261 -8.467 -6.283 16 A_U23:A37_A A 23 ? A 37 ? 20 1 1 A G 19 1_555 A C 31 1_555 0.133 -0.318 0.445 10.986 -7.171 -3.955 17 A_G24:C36_A A 24 ? A 36 ? 19 1 1 A A 20 1_555 A U 30 1_555 0.022 0.047 0.613 16.544 -11.686 4.170 18 A_A25:U35_A A 25 ? A 35 ? 20 1 1 A C 21 1_555 A G 29 1_555 0.014 0.022 0.003 -0.056 -14.257 4.601 19 A_C26:G34_A A 26 ? A 34 ? 19 1 1 A C 22 1_555 A G 28 1_555 -0.144 -0.133 0.044 -2.427 0.625 -1.036 20 A_C27:G33_A A 27 ? A 33 ? 19 1 1 A A 23 1_555 A G 26 1_555 -2.779 4.915 -1.966 59.609 13.158 139.624 21 A_A28:G31_A A 28 ? A 31 ? ? 11 1 A A 50 1_555 A G 47 1_555 -6.849 -5.247 0.911 -17.733 4.531 -10.136 22 A_A55:G52_A A 55 ? A 52 ? ? ? 1 A G 51 1_555 A C 46 1_555 -0.152 -0.312 -0.347 -5.866 4.305 -1.340 23 A_G56:C51_A A 56 ? A 51 ? 19 1 1 A C 52 1_555 A G 45 1_555 0.132 -0.412 0.075 1.140 10.404 -3.855 24 A_C57:G50_A A 57 ? A 50 ? 19 1 1 A G 53 1_555 A U 44 1_555 -2.332 -0.676 -0.336 -10.001 -1.208 1.707 25 A_G58:U49_A A 58 ? A 49 ? 28 1 1 A G 54 1_555 A C 43 1_555 -0.312 -0.225 -0.234 -8.029 -0.808 -1.856 26 A_G59:C48_A A 59 ? A 48 ? 19 1 1 A C 55 1_555 A G 42 1_555 -0.027 -0.198 -0.156 2.641 -0.920 -1.303 27 A_C60:G47_A A 60 ? A 47 ? 19 1 1 A A 56 1_555 A G 81 1_555 -6.723 -4.102 -0.063 -1.184 -7.151 -1.958 28 A_A61:G86_A A 61 ? A 86 ? 11 9 1 A A 57 1_555 A U 80 1_555 -0.480 -0.290 -0.231 -2.597 -8.410 0.273 29 A_A62:U85_A A 62 ? A 85 ? 20 1 1 A C 58 1_555 A G 79 1_555 -0.041 -0.413 -0.235 0.503 -7.840 -2.639 30 A_C63:G84_A A 63 ? A 84 ? 19 1 1 A A 59 1_555 A U 78 1_555 0.460 -0.133 -0.245 -1.368 -11.365 5.352 31 A_A64:U83_A A 64 ? A 83 ? 20 1 1 A G 60 1_555 A C 77 1_555 -0.297 -0.148 0.196 -4.768 -12.178 5.375 32 A_G65:C82_A A 65 ? A 82 ? 19 1 1 A A 61 1_555 A U 76 1_555 -0.896 -0.625 0.451 0.657 -9.743 -1.779 33 A_A66:U81_A A 66 ? A 81 ? 20 1 1 A U 62 1_555 A A 75 1_555 -0.233 -0.457 0.572 -6.753 -18.531 6.337 34 A_U67:A80_A A 67 ? A 80 ? 20 1 1 A G 63 1_555 A C 74 1_555 -0.109 0.082 0.230 -23.848 -21.499 -1.809 35 A_G68:C79_A A 68 ? A 79 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A GTP 1 1_555 A C 92 1_555 A G 2 1_555 A C 91 1_555 0.330 -2.316 3.229 2.104 8.150 30.347 -5.643 -0.254 2.552 15.204 -3.926 31.466 1 AA_GTP6G7:C96C97_AA A 6 ? A 97 ? A 7 ? A 96 ? 1 A G 2 1_555 A C 91 1_555 A G 3 1_555 A C 90 1_555 -0.188 -2.063 3.299 1.885 9.722 30.645 -5.311 0.648 2.528 17.821 -3.454 32.169 2 AA_G7G8:C95C96_AA A 7 ? A 96 ? A 8 ? A 95 ? 1 A G 3 1_555 A C 90 1_555 A A 4 1_555 A U 89 1_555 -0.085 -1.628 3.152 -0.818 10.339 33.058 -4.158 0.030 2.544 17.637 1.396 34.603 3 AA_G8A9:U94C95_AA A 8 ? A 95 ? A 9 ? A 94 ? 1 A A 4 1_555 A U 89 1_555 A A 5 1_555 A U 88 1_555 0.162 -1.268 3.082 2.903 9.455 30.720 -3.780 0.168 2.592 17.294 -5.310 32.236 4 AA_A9A10:U93U94_AA A 9 ? A 94 ? A 10 ? A 93 ? 1 A A 5 1_555 A U 88 1_555 A C 6 1_555 A G 87 1_555 0.773 -1.196 3.154 1.946 5.239 31.767 -3.033 -1.065 2.964 9.479 -3.521 32.243 5 AA_A10C11:G92U93_AA A 10 ? A 93 ? A 11 ? A 92 ? 1 A C 6 1_555 A G 87 1_555 A U 7 1_555 A A 86 1_555 1.107 -2.046 3.411 0.827 6.992 30.128 -5.162 -1.919 2.902 13.225 -1.563 30.922 6 AA_C11U12:A91G92_AA A 11 ? A 92 ? A 12 ? A 91 ? 1 A U 7 1_555 A A 86 1_555 A G 8 1_555 A C 85 1_555 0.012 -2.057 3.117 1.557 1.937 31.891 -4.061 0.240 2.987 3.518 -2.828 31.985 7 AA_U12G13:C90A91_AA A 12 ? A 91 ? A 13 ? A 90 ? 1 A G 8 1_555 A C 85 1_555 A A 9 1_555 A A 84 1_555 0.489 -1.773 3.114 4.947 -2.273 34.992 -2.588 -0.091 3.256 -3.752 -8.166 35.400 8 AA_G13A14:A89C90_AA A 13 ? A 90 ? A 14 ? A 89 ? 1 A A 9 1_555 A A 84 1_555 A C 11 1_555 A G 83 1_555 -2.443 -3.034 3.134 -0.568 7.454 36.093 -5.684 3.799 2.516 11.875 0.904 36.833 9 AA_A14C16:G88A89_AA A 14 ? A 89 ? A 16 ? A 88 ? 1 A C 11 1_555 A G 83 1_555 A A 12 1_555 A G 40 1_555 3.831 0.925 2.532 0.296 17.185 38.186 -0.224 -5.350 2.717 24.794 -0.428 41.744 10 AA_C16A17:G45G88_AA A 16 ? A 88 ? A 17 ? A 45 ? 1 A A 12 1_555 A G 40 1_555 A G 13 1_555 A C 39 1_555 -0.674 -0.986 3.543 -4.636 5.839 60.283 -1.279 0.425 3.481 5.790 4.597 60.699 11 AA_A17G18:C44G45_AA A 17 ? A 45 ? A 18 ? A 44 ? 1 A G 13 1_555 A C 39 1_555 A G 14 1_555 A C 38 1_555 -0.652 -2.095 2.994 -3.886 5.729 24.952 -6.046 0.529 2.529 12.945 8.781 25.880 12 AA_G18G19:C43C44_AA A 18 ? A 44 ? A 19 ? A 43 ? 1 A G 14 1_555 A C 38 1_555 A C 15 1_555 A G 37 1_555 1.000 -2.173 3.146 -0.722 0.284 29.689 -4.296 -2.096 3.101 0.555 1.409 29.698 13 AA_G19C20:G42C43_AA A 19 ? A 43 ? A 20 ? A 42 ? 1 A A 17 1_555 A U 33 1_555 A U 18 1_555 A A 32 1_555 0.002 -1.806 3.070 -1.313 1.284 30.733 -3.635 -0.241 2.991 2.421 2.475 30.787 14 AA_A22U23:A37U38_AA A 22 ? A 38 ? A 23 ? A 37 ? 1 A U 18 1_555 A A 32 1_555 A G 19 1_555 A C 31 1_555 -0.361 -1.821 2.933 -1.870 12.167 33.052 -4.469 0.373 2.166 20.521 3.154 35.210 15 AA_U23G24:C36A37_AA A 23 ? A 37 ? A 24 ? A 36 ? 1 A G 19 1_555 A C 31 1_555 A A 20 1_555 A U 30 1_555 0.114 -0.938 3.077 1.213 11.343 32.017 -3.237 -0.020 2.606 19.797 -2.117 33.939 16 AA_G24A25:U35C36_AA A 24 ? A 36 ? A 25 ? A 35 ? 1 A A 20 1_555 A U 30 1_555 A C 21 1_555 A G 29 1_555 0.068 -1.427 3.741 5.084 12.961 33.566 -4.238 0.654 2.985 21.338 -8.370 36.262 17 AA_A25C26:G34U35_AA A 25 ? A 35 ? A 26 ? A 34 ? 1 A C 21 1_555 A G 29 1_555 A C 22 1_555 A G 28 1_555 0.560 -1.211 3.302 4.859 4.871 31.455 -3.051 -0.147 3.133 8.852 -8.830 32.180 18 AA_C26C27:G33G34_AA A 26 ? A 34 ? A 27 ? A 33 ? 1 A C 22 1_555 A G 28 1_555 A A 23 1_555 A G 26 1_555 4.391 -2.821 5.304 -41.107 11.904 -23.717 1.026 -2.953 6.981 -17.337 -59.867 -48.657 19 AA_C27A28:G31G33_AA A 27 ? A 33 ? A 28 ? A 31 ? 1 A A 50 1_555 A G 47 1_555 A G 51 1_555 A C 46 1_555 1.404 -1.077 3.055 -0.488 16.133 52.586 -2.029 -1.551 2.633 17.741 0.536 54.838 20 AA_A55G56:C51G52_AA A 55 ? A 52 ? A 56 ? A 51 ? 1 A G 51 1_555 A C 46 1_555 A C 52 1_555 A G 45 1_555 0.051 -2.170 3.265 -3.258 4.718 29.723 -5.061 -0.721 2.873 9.091 6.277 30.258 21 AA_G56C57:G50C51_AA A 56 ? A 51 ? A 57 ? A 50 ? 1 A C 52 1_555 A G 45 1_555 A G 53 1_555 A U 44 1_555 2.221 -2.442 3.543 5.688 4.081 20.547 -8.269 -3.417 3.480 11.034 -15.382 21.695 22 AA_C57G58:U49G50_AA A 57 ? A 50 ? A 58 ? A 49 ? 1 A G 53 1_555 A U 44 1_555 A G 54 1_555 A C 43 1_555 -0.479 -2.273 3.351 1.572 -1.785 35.709 -3.433 1.014 3.433 -2.907 -2.561 35.785 23 AA_G58G59:C48U49_AA A 58 ? A 49 ? A 59 ? A 48 ? 1 A G 54 1_555 A C 43 1_555 A C 55 1_555 A G 42 1_555 -1.273 -2.780 3.070 -0.894 1.971 17.700 -10.013 3.635 2.806 6.376 2.891 17.831 24 AA_G59C60:G47C48_AA A 59 ? A 48 ? A 60 ? A 47 ? 1 A C 55 1_555 A G 42 1_555 A A 56 1_555 A G 81 1_555 3.741 1.078 3.062 0.303 8.442 37.471 0.611 -5.654 3.249 12.940 -0.464 38.378 25 AA_C60A61:G86G47_AA A 60 ? A 47 ? A 61 ? A 86 ? 1 A A 56 1_555 A G 81 1_555 A A 57 1_555 A U 80 1_555 0.321 -1.170 3.531 -3.715 6.047 59.326 -1.495 -0.519 3.385 6.085 3.739 59.711 26 AA_A61A62:U85G86_AA A 61 ? A 86 ? A 62 ? A 85 ? 1 A A 57 1_555 A U 80 1_555 A C 58 1_555 A G 79 1_555 -0.304 -2.102 3.160 0.744 4.674 30.185 -4.841 0.713 2.802 8.906 -1.418 30.546 27 AA_A62C63:G84U85_AA A 62 ? A 85 ? A 63 ? A 84 ? 1 A C 58 1_555 A G 79 1_555 A A 59 1_555 A U 78 1_555 0.620 -1.555 3.347 3.493 10.958 32.924 -4.201 -0.526 2.754 18.639 -5.942 34.823 28 AA_C63A64:U83G84_AA A 63 ? A 84 ? A 64 ? A 83 ? 1 A A 59 1_555 A U 78 1_555 A G 60 1_555 A C 77 1_555 0.417 -1.765 3.251 0.167 12.139 29.248 -5.245 -0.738 2.352 22.838 -0.314 31.616 29 AA_A64G65:C82U83_AA A 64 ? A 83 ? A 65 ? A 82 ? 1 A G 60 1_555 A C 77 1_555 A A 61 1_555 A U 76 1_555 -0.058 -1.793 2.805 -2.351 10.006 26.311 -5.453 -0.299 1.999 20.992 4.932 28.214 30 AA_G65A66:U81C82_AA A 65 ? A 82 ? A 66 ? A 81 ? 1 A A 61 1_555 A U 76 1_555 A U 62 1_555 A A 75 1_555 0.737 -1.617 3.282 0.407 5.907 34.889 -3.501 -1.155 2.985 9.764 -0.672 35.373 31 AA_A66U67:A80U81_AA A 66 ? A 81 ? A 67 ? A 80 ? 1 A U 62 1_555 A A 75 1_555 A G 63 1_555 A C 74 1_555 0.294 -1.826 3.227 5.098 13.027 35.612 -4.274 0.130 2.452 20.357 -7.967 38.178 32 AA_U67G68:C79A80_AA A 67 ? A 80 ? A 68 ? A 79 ? # _atom_sites.entry_id 4RUM _atom_sites.fract_transf_matrix[1][1] 0.010440 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010440 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004348 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO H K MG N O P SR # loop_