HEADER SIGNALING PROTEIN, HYDROLASE 05-DEC-14 4RWS TITLE CRYSTAL STRUCTURE OF CXCR4 AND VIRAL CHEMOKINE ANTAGONIST VMIP-II TITLE 2 COMPLEX (PSI COMMUNITY TARGET) COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-X-C CHEMOKINE RECEPTOR TYPE 4/ENDOLYSIN CHIMERIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CXCR4 RESIDUES 2-228, LYSOZYME RESIDUES 1002-1161, CXCR4 COMPND 5 RESIDUES 231-319; COMPND 6 SYNONYM: CXC-R4, CXCR-4, STROMAL CELL-DERIVED FACTOR 1 RECEPTOR, SDF- COMPND 7 1 RECEPTOR, FUSIN, LEUKOCYTE-DERIVED SEVEN TRANSMEMBRANE DOMAIN COMPND 8 RECEPTOR, LESTR, LCR1, FB22, NPYRL, HM89, LYSIS PROTEIN, MURAMIDASE, COMPND 9 ENDOLYSIN; COMPND 10 EC: 3.2.1.17; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES; COMPND 13 MOL_ID: 2; COMPND 14 MOLECULE: VIRAL MACROPHAGE INFLAMMATORY PROTEIN 2; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: VIRAL MACROPHAGE INFLAMMATORY PROTEIN II, VMIP-II, VMIP-1B; COMPND 17 ENGINEERED: YES; COMPND 18 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, ENTEROBACTERIA PHAGE T4; SOURCE 3 ORGANISM_TAXID: 9606, 10665; SOURCE 4 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PFASTBAC; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 8 STRAIN GK18; SOURCE 10 ORGANISM_COMMON: HHV-8; SOURCE 11 ORGANISM_TAXID: 868565; SOURCE 12 GENE: ORF K4; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PFASTBAC KEYWDS HUMAN CHEMOKINE-CHEMOKINE RECEPTOR COMPLEX, GPCR SIGNALING, PSI- KEYWDS 2 BIOLOGY, GPCR NETWORK, MEMBRANE PROTEIN, GPCR, CXCR4, VIRAL KEYWDS 3 ANTAGONIST CHEMOKINE VMIP-II, MEMBRANE, LIPIDIC CUBIC PHASE, T4L, KEYWDS 4 STRUCTURAL GENOMICS, SIGNALING PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.QIN,I.KUFAREVA,L.HOLDEN,C.WANG,Y.ZHENG,H.WU,G.FENALTI,G.W.HAN, AUTHOR 2 V.CHEREZOV,R.ABAGYAN,R.C.STEVENS,T.M.HANDEL,GPCR NETWORK (GPCR) REVDAT 6 20-SEP-23 4RWS 1 SEQADV REVDAT 5 22-NOV-17 4RWS 1 REMARK REVDAT 4 02-AUG-17 4RWS 1 SOURCE REMARK REVDAT 3 15-APR-15 4RWS 1 JRNL REVDAT 2 25-FEB-15 4RWS 1 JRNL REVDAT 1 11-FEB-15 4RWS 0 JRNL AUTH L.QIN,I.KUFAREVA,L.G.HOLDEN,C.WANG,Y.ZHENG,C.ZHAO,G.FENALTI, JRNL AUTH 2 H.WU,G.W.HAN,V.CHEREZOV,R.ABAGYAN,R.C.STEVENS,T.M.HANDEL JRNL TITL STRUCTURAL BIOLOGY. CRYSTAL STRUCTURE OF THE CHEMOKINE JRNL TITL 2 RECEPTOR CXCR4 IN COMPLEX WITH A VIRAL CHEMOKINE. JRNL REF SCIENCE V. 347 1117 2015 JRNL REFN ISSN 0036-8075 JRNL PMID 25612609 JRNL DOI 10.1126/SCIENCE.1261064 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.6 REMARK 3 NUMBER OF REFLECTIONS : 15153 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.251 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 767 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 3.3100 - 3.1000 0.86 1520 79 0.2504 0.2421 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 82.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 12.82150 REMARK 3 B22 (A**2) : -1.47950 REMARK 3 B33 (A**2) : -11.34200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4057 REMARK 3 ANGLE : 0.940 5535 REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL 594 REMARK 3 DIHEDRAL : NULL 1806 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|23 - A|303 } REMARK 3 ORIGIN FOR THE GROUP (A): 99.7894 2.4949 47.9252 REMARK 3 T TENSOR REMARK 3 T11: 0.2549 T22: -0.2657 REMARK 3 T33: -0.4269 T12: -0.0538 REMARK 3 T13: -0.0028 T23: -0.0361 REMARK 3 L TENSOR REMARK 3 L11: 1.3098 L22: 2.8554 REMARK 3 L33: 6.9762 L12: -0.0287 REMARK 3 L13: -1.5603 L23: 1.3744 REMARK 3 S TENSOR REMARK 3 S11: 0.0272 S12: -0.1203 S13: -0.0917 REMARK 3 S21: -0.0130 S22: 0.0710 S23: -0.3034 REMARK 3 S31: 0.0235 S32: 0.5794 S33: -0.0981 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|1002 - A|1164 } REMARK 3 ORIGIN FOR THE GROUP (A): 86.7705 25.2500 82.4686 REMARK 3 T TENSOR REMARK 3 T11: 0.6079 T22: -0.3399 REMARK 3 T33: -0.6079 T12: -0.0860 REMARK 3 T13: 0.1059 T23: -0.0550 REMARK 3 L TENSOR REMARK 3 L11: 5.9286 L22: 5.4991 REMARK 3 L33: 3.5594 L12: -1.3641 REMARK 3 L13: 0.9960 L23: 0.5408 REMARK 3 S TENSOR REMARK 3 S11: 0.1015 S12: 0.2827 S13: -0.0150 REMARK 3 S21: -0.7653 S22: 0.0573 S23: -0.2909 REMARK 3 S31: -0.8946 S32: 0.4631 S33: -0.1587 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|1 - C|70 } REMARK 3 ORIGIN FOR THE GROUP (A): 100.4600 8.0975 10.0361 REMARK 3 T TENSOR REMARK 3 T11: 0.5890 T22: -0.2539 REMARK 3 T33: -0.4969 T12: -0.1526 REMARK 3 T13: 0.1134 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 0.9662 L22: 9.1126 REMARK 3 L33: 8.8686 L12: 0.1236 REMARK 3 L13: -0.3782 L23: 5.1155 REMARK 3 S TENSOR REMARK 3 S11: 0.0263 S12: 0.0019 S13: -0.0116 REMARK 3 S21: 0.1181 S22: -0.0586 S23: 0.2515 REMARK 3 S31: -0.0536 S32: -0.2730 S33: 0.0323 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RWS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000087892. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-14; 21-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 10 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 23-ID-B; 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332; 1.0332 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL; ACCEL FIXED EXIT REMARK 200 DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; PIXEL REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD; PSI REMARK 200 PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16747 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.69000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3OE0, PDB ENTRY 2FHT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE PH 5.5, 28% PEG REMARK 280 400, 120 MM AMMONIUM PHOSPHATE DIBASIC, 2-6% POLYPROPYLENE P400, REMARK 280 LIPIDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.16000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.91350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 94.88300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.16000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.91350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 94.88300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.16000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.91350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 94.88300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.16000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.91350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 94.88300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A -8 REMARK 465 TYR A -7 REMARK 465 LYS A -6 REMARK 465 ASP A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 PRO A 1 REMARK 465 GLU A 2 REMARK 465 GLY A 3 REMARK 465 ILE A 4 REMARK 465 SER A 5 REMARK 465 ILE A 6 REMARK 465 TYR A 7 REMARK 465 THR A 8 REMARK 465 SER A 9 REMARK 465 ASP A 10 REMARK 465 ASN A 11 REMARK 465 TYR A 12 REMARK 465 THR A 13 REMARK 465 GLU A 14 REMARK 465 GLU A 15 REMARK 465 MET A 16 REMARK 465 GLY A 17 REMARK 465 SER A 18 REMARK 465 GLY A 19 REMARK 465 ASP A 20 REMARK 465 TYR A 21 REMARK 465 ASP A 22 REMARK 465 LYS A 67 REMARK 465 LYS A 68 REMARK 465 LEU A 69 REMARK 465 ARG A 70 REMARK 465 PHE A 304 REMARK 465 LEU A 305 REMARK 465 GLY A 306 REMARK 465 ALA A 307 REMARK 465 LYS A 308 REMARK 465 PHE A 309 REMARK 465 LYS A 310 REMARK 465 THR A 311 REMARK 465 SER A 312 REMARK 465 ALA A 313 REMARK 465 GLN A 314 REMARK 465 HIS A 315 REMARK 465 ALA A 316 REMARK 465 LEU A 317 REMARK 465 THR A 318 REMARK 465 SER A 319 REMARK 465 GLY A 320 REMARK 465 ARG A 321 REMARK 465 PRO A 322 REMARK 465 LEU A 323 REMARK 465 GLU A 324 REMARK 465 VAL A 325 REMARK 465 LEU A 326 REMARK 465 PHE A 327 REMARK 465 GLN A 328 REMARK 465 ARG C 71 REMARK 465 TYR C 72 REMARK 465 PRO C 73 REMARK 465 TYR C 74 REMARK 465 ASP C 75 REMARK 465 VAL C 76 REMARK 465 PRO C 77 REMARK 465 ASP C 78 REMARK 465 TYR C 79 REMARK 465 ALA C 80 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 ASN A 143 CG OD1 ND2 REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 LYS A1019 CD CE NZ REMARK 470 ARG A1076 CG CD NE CZ NH1 NH2 REMARK 470 ILE A1078 CG1 CG2 CD1 REMARK 470 ARG A1080 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1083 CG CD CE NZ REMARK 470 LEU A1084 CG CD1 CD2 REMARK 470 LYS A1085 CG CD CE NZ REMARK 470 THR A1115 OG1 CG2 REMARK 470 ARG A1119 CG CD NE CZ NH1 NH2 REMARK 470 GLN A1122 CD OE1 NE2 REMARK 470 GLN A1123 CG CD OE1 NE2 REMARK 470 LYS A1124 CG CD CE NZ REMARK 470 GLU A1128 CG CD OE1 OE2 REMARK 470 ASN A1132 CG OD1 ND2 REMARK 470 LYS A1135 CG CD CE NZ REMARK 470 ARG A1137 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1147 CD CE NZ REMARK 470 SER A1164 OG REMARK 470 GLN A 233 CG CD OE1 NE2 REMARK 470 ARG A 235 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 236 CE NZ REMARK 470 LYS A 239 CG CD CE NZ REMARK 470 LYS C 17 CG CD CE NZ REMARK 470 ARG C 18 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 24 CG CD1 CD2 REMARK 470 LYS C 56 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 100 -114.40 -102.62 REMARK 500 ASN A 143 80.00 -156.02 REMARK 500 LYS A 154 -53.55 -126.42 REMARK 500 VAL A 160 -58.51 -123.97 REMARK 500 ASP A 181 -98.60 59.04 REMARK 500 MET A 205 -71.24 -73.70 REMARK 500 LEU A 208 -52.39 -147.35 REMARK 500 ASP A1010 -70.56 -76.41 REMARK 500 ASN A1055 36.13 -98.78 REMARK 500 ASP A1092 -151.33 -79.11 REMARK 500 PHE A1114 34.84 -97.42 REMARK 500 SER A1164 -127.83 -137.79 REMARK 500 HIS C 6 -71.02 -62.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ODU RELATED DB: PDB REMARK 900 CXCR4 WITH SMALL-MOLECULE ANTAGONIST IT1T IN P21 SPACEGROUP REMARK 900 RELATED ID: 3OE6 RELATED DB: PDB REMARK 900 CXCR4 WITH SMALL-MOLECULE ANTAGONIST IT1T IN I222 SPACEGROUP REMARK 900 RELATED ID: 3OE8 RELATED DB: PDB REMARK 900 CXCR4 WITH SMALL-MOLECULE ANTAGONIST IT1T IN P1 SPACEGROUP REMARK 900 RELATED ID: 3OE9 RELATED DB: PDB REMARK 900 CXCR4 WITH SMALL-MOLECULE IN P1 SPACEGROUP REMARK 900 RELATED ID: 3OE0 RELATED DB: PDB REMARK 900 CXCR4 WITH CYCLIC PEPTIDE ANTAGONISTS. REMARK 900 RELATED ID: GPCR-34 RELATED DB: TARGETTRACK DBREF 4RWS A 2 228 UNP P61073 CXCR4_HUMAN 2 228 DBREF 4RWS A 1002 1161 UNP P00720 LYS_BPT4 1002 1161 DBREF 4RWS A 231 319 UNP P61073 CXCR4_HUMAN 231 319 DBREF 4RWS C 1 71 UNP Q98157 VMI2_HHV8P 24 94 SEQADV 4RWS ASP A -8 UNP P61073 EXPRESSION TAG SEQADV 4RWS TYR A -7 UNP P61073 EXPRESSION TAG SEQADV 4RWS LYS A -6 UNP P61073 EXPRESSION TAG SEQADV 4RWS ASP A -5 UNP P61073 EXPRESSION TAG SEQADV 4RWS ASP A -4 UNP P61073 EXPRESSION TAG SEQADV 4RWS ASP A -3 UNP P61073 EXPRESSION TAG SEQADV 4RWS ASP A -2 UNP P61073 EXPRESSION TAG SEQADV 4RWS GLY A -1 UNP P61073 EXPRESSION TAG SEQADV 4RWS ALA A 0 UNP P61073 EXPRESSION TAG SEQADV 4RWS PRO A 1 UNP P61073 EXPRESSION TAG SEQADV 4RWS TRP A 125 UNP P61073 LEU 125 ENGINEERED MUTATION SEQADV 4RWS CYS A 187 UNP P61073 ASP 187 ENGINEERED MUTATION SEQADV 4RWS THR A 1054 UNP P00720 CYS 1054 ENGINEERED MUTATION SEQADV 4RWS ALA A 1097 UNP P00720 CYS 1097 ENGINEERED MUTATION SEQADV 4RWS SER A 1162 UNP P00720 LINKER SEQADV 4RWS GLY A 1163 UNP P00720 LINKER SEQADV 4RWS SER A 1164 UNP P00720 LINKER SEQADV 4RWS PRO A 240 UNP P61073 THR 240 ENGINEERED MUTATION SEQADV 4RWS GLY A 320 UNP P61073 EXPRESSION TAG SEQADV 4RWS ARG A 321 UNP P61073 EXPRESSION TAG SEQADV 4RWS PRO A 322 UNP P61073 EXPRESSION TAG SEQADV 4RWS LEU A 323 UNP P61073 EXPRESSION TAG SEQADV 4RWS GLU A 324 UNP P61073 EXPRESSION TAG SEQADV 4RWS VAL A 325 UNP P61073 EXPRESSION TAG SEQADV 4RWS LEU A 326 UNP P61073 EXPRESSION TAG SEQADV 4RWS PHE A 327 UNP P61073 EXPRESSION TAG SEQADV 4RWS GLN A 328 UNP P61073 EXPRESSION TAG SEQADV 4RWS CYS C 5 UNP Q98157 TRP 28 ENGINEERED MUTATION SEQADV 4RWS TYR C 72 UNP Q98157 EXPRESSION TAG SEQADV 4RWS PRO C 73 UNP Q98157 EXPRESSION TAG SEQADV 4RWS TYR C 74 UNP Q98157 EXPRESSION TAG SEQADV 4RWS ASP C 75 UNP Q98157 EXPRESSION TAG SEQADV 4RWS VAL C 76 UNP Q98157 EXPRESSION TAG SEQADV 4RWS PRO C 77 UNP Q98157 EXPRESSION TAG SEQADV 4RWS ASP C 78 UNP Q98157 EXPRESSION TAG SEQADV 4RWS TYR C 79 UNP Q98157 EXPRESSION TAG SEQADV 4RWS ALA C 80 UNP Q98157 EXPRESSION TAG SEQRES 1 A 498 ASP TYR LYS ASP ASP ASP ASP GLY ALA PRO GLU GLY ILE SEQRES 2 A 498 SER ILE TYR THR SER ASP ASN TYR THR GLU GLU MET GLY SEQRES 3 A 498 SER GLY ASP TYR ASP SER MET LYS GLU PRO CYS PHE ARG SEQRES 4 A 498 GLU GLU ASN ALA ASN PHE ASN LYS ILE PHE LEU PRO THR SEQRES 5 A 498 ILE TYR SER ILE ILE PHE LEU THR GLY ILE VAL GLY ASN SEQRES 6 A 498 GLY LEU VAL ILE LEU VAL MET GLY TYR GLN LYS LYS LEU SEQRES 7 A 498 ARG SER MET THR ASP LYS TYR ARG LEU HIS LEU SER VAL SEQRES 8 A 498 ALA ASP LEU LEU PHE VAL ILE THR LEU PRO PHE TRP ALA SEQRES 9 A 498 VAL ASP ALA VAL ALA ASN TRP TYR PHE GLY ASN PHE LEU SEQRES 10 A 498 CYS LYS ALA VAL HIS VAL ILE TYR THR VAL ASN LEU TYR SEQRES 11 A 498 SER SER VAL TRP ILE LEU ALA PHE ILE SER LEU ASP ARG SEQRES 12 A 498 TYR LEU ALA ILE VAL HIS ALA THR ASN SER GLN ARG PRO SEQRES 13 A 498 ARG LYS LEU LEU ALA GLU LYS VAL VAL TYR VAL GLY VAL SEQRES 14 A 498 TRP ILE PRO ALA LEU LEU LEU THR ILE PRO ASP PHE ILE SEQRES 15 A 498 PHE ALA ASN VAL SER GLU ALA ASP ASP ARG TYR ILE CYS SEQRES 16 A 498 CYS ARG PHE TYR PRO ASN ASP LEU TRP VAL VAL VAL PHE SEQRES 17 A 498 GLN PHE GLN HIS ILE MET VAL GLY LEU ILE LEU PRO GLY SEQRES 18 A 498 ILE VAL ILE LEU SER CYS TYR CYS ILE ILE ILE SER LYS SEQRES 19 A 498 LEU SER HIS ASN ILE PHE GLU MET LEU ARG ILE ASP GLU SEQRES 20 A 498 GLY LEU ARG LEU LYS ILE TYR LYS ASP THR GLU GLY TYR SEQRES 21 A 498 TYR THR ILE GLY ILE GLY HIS LEU LEU THR LYS SER PRO SEQRES 22 A 498 SER LEU ASN ALA ALA LYS SER GLU LEU ASP LYS ALA ILE SEQRES 23 A 498 GLY ARG ASN THR ASN GLY VAL ILE THR LYS ASP GLU ALA SEQRES 24 A 498 GLU LYS LEU PHE ASN GLN ASP VAL ASP ALA ALA VAL ARG SEQRES 25 A 498 GLY ILE LEU ARG ASN ALA LYS LEU LYS PRO VAL TYR ASP SEQRES 26 A 498 SER LEU ASP ALA VAL ARG ARG ALA ALA LEU ILE ASN MET SEQRES 27 A 498 VAL PHE GLN MET GLY GLU THR GLY VAL ALA GLY PHE THR SEQRES 28 A 498 ASN SER LEU ARG MET LEU GLN GLN LYS ARG TRP ASP GLU SEQRES 29 A 498 ALA ALA VAL ASN LEU ALA LYS SER ARG TRP TYR ASN GLN SEQRES 30 A 498 THR PRO ASN ARG ALA LYS ARG VAL ILE THR THR PHE ARG SEQRES 31 A 498 THR GLY THR TRP ASP ALA TYR SER GLY SER GLY HIS GLN SEQRES 32 A 498 LYS ARG LYS ALA LEU LYS PRO THR VAL ILE LEU ILE LEU SEQRES 33 A 498 ALA PHE PHE ALA CYS TRP LEU PRO TYR TYR ILE GLY ILE SEQRES 34 A 498 SER ILE ASP SER PHE ILE LEU LEU GLU ILE ILE LYS GLN SEQRES 35 A 498 GLY CYS GLU PHE GLU ASN THR VAL HIS LYS TRP ILE SER SEQRES 36 A 498 ILE THR GLU ALA LEU ALA PHE PHE HIS CYS CYS LEU ASN SEQRES 37 A 498 PRO ILE LEU TYR ALA PHE LEU GLY ALA LYS PHE LYS THR SEQRES 38 A 498 SER ALA GLN HIS ALA LEU THR SER GLY ARG PRO LEU GLU SEQRES 39 A 498 VAL LEU PHE GLN SEQRES 1 C 80 LEU GLY ALA SER CYS HIS ARG PRO ASP LYS CYS CYS LEU SEQRES 2 C 80 GLY TYR GLN LYS ARG PRO LEU PRO GLN VAL LEU LEU SER SEQRES 3 C 80 SER TRP TYR PRO THR SER GLN LEU CYS SER LYS PRO GLY SEQRES 4 C 80 VAL ILE PHE LEU THR LYS ARG GLY ARG GLN VAL CYS ALA SEQRES 5 C 80 ASP LYS SER LYS ASP TRP VAL LYS LYS LEU MET GLN GLN SEQRES 6 C 80 LEU PRO VAL THR ALA ARG TYR PRO TYR ASP VAL PRO ASP SEQRES 7 C 80 TYR ALA HELIX 1 1 ARG A 30 GLY A 64 1 35 HELIX 2 2 MET A 72 ASP A 84 1 13 HELIX 3 3 ASP A 84 ILE A 89 1 6 HELIX 4 4 THR A 90 ALA A 100 1 11 HELIX 5 5 GLY A 105 VAL A 139 1 35 HELIX 6 6 HIS A 140 ASN A 143 5 4 HELIX 7 7 SER A 144 LYS A 154 1 11 HELIX 8 8 LYS A 154 VAL A 160 1 7 HELIX 9 9 VAL A 160 LEU A 167 1 8 HELIX 10 10 ILE A 169 PHE A 174 1 6 HELIX 11 11 ASN A 192 LEU A 208 1 17 HELIX 12 12 LEU A 208 GLU A 1011 1 31 HELIX 13 13 SER A 1038 GLY A 1051 1 14 HELIX 14 14 THR A 1059 LEU A 1079 1 21 HELIX 15 15 LEU A 1084 ASP A 1089 1 6 HELIX 16 16 ALA A 1093 MET A 1106 1 14 HELIX 17 17 GLY A 1107 ALA A 1112 1 6 HELIX 18 18 PHE A 1114 GLN A 1123 1 10 HELIX 19 19 ARG A 1125 ALA A 1134 1 10 HELIX 20 20 THR A 1142 GLY A 1156 1 15 HELIX 21 21 THR A 1157 TYR A 1161 5 5 HELIX 22 22 LEU A 238 LEU A 267 1 30 HELIX 23 23 GLY A 273 PHE A 292 1 20 HELIX 24 24 PHE A 293 CYS A 295 5 3 HELIX 25 25 CYS A 296 LEU A 301 1 6 HELIX 26 26 LYS C 56 LEU C 66 1 11 SHEET 1 A 2 ALA A 175 ALA A 180 0 SHEET 2 A 2 ARG A 183 ARG A 188 -1 O ILE A 185 N SER A 178 SHEET 1 B 3 TYR A1018 LYS A1019 0 SHEET 2 B 3 TYR A1025 ILE A1027 -1 O THR A1026 N TYR A1018 SHEET 3 B 3 HIS A1031 THR A1034 -1 O LEU A1033 N TYR A1025 SHEET 1 C 3 LEU C 25 PRO C 30 0 SHEET 2 C 3 VAL C 40 THR C 44 -1 O ILE C 41 N TYR C 29 SHEET 3 C 3 GLN C 49 ALA C 52 -1 O VAL C 50 N PHE C 42 SSBOND 1 CYS A 28 CYS A 274 1555 1555 2.04 SSBOND 2 CYS A 109 CYS A 186 1555 1555 2.04 SSBOND 3 CYS A 187 CYS C 5 1555 1555 2.03 SSBOND 4 CYS C 11 CYS C 35 1555 1555 2.04 SSBOND 5 CYS C 12 CYS C 51 1555 1555 2.04 CRYST1 82.320 121.827 189.766 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012148 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008208 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005270 0.00000