HEADER TRANSCRIPTION 05-DEC-14 4RWV TITLE CRYSTAL STRUCTURE OF PIP3 BOUND HUMAN NUCLEAR RECEPTOR LRH-1 (LIVER TITLE 2 RECEPTOR HOMOLOG 1, NR5A2) IN COMPLEX WITH A CO-REGULATOR DAX-1 TITLE 3 (NR0B1) PEPTIDE AT 1.86 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR RECEPTOR SUBFAMILY 5 GROUP A MEMBER 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN (UNP RESIDUES 294-551); COMPND 5 SYNONYM: ALPHA-1-FETOPROTEIN TRANSCRIPTION FACTOR, B1-BINDING FACTOR, COMPND 6 HB1F, CYP7A PROMOTER-BINDING FACTOR, HEPATOCYTIC TRANSCRIPTION COMPND 7 FACTOR, LIVER RECEPTOR HOMOLOG 1, LRH-1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: NUCLEAR RECEPTOR DAX1; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: UNP RESIDUES 140-154; COMPND 13 SYNONYM: NUCLEAR RECEPTOR SUBFAMILY 0, GROUP B, MEMBER 1; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: B1F, CPF, FTF, NR5A2, RC2754B.LRH_1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRSF-2 EK/LIC LIGATION INDEPENDENT SOURCE 11 CLONING; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 OTHER_DETAILS: COMES FROM SCREENING BUFFER AS A PEPTIDE KEYWDS LIGAND-BINDING DOMAIN OF NUCLEAR HORMONE RECEPTOR, PF00104 FAMILY, KEYWDS 2 STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, PARTNERSHIP FOR STEM CELL KEYWDS 4 BIOLOGY, TRANSCRIPTION, STEMCELL EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG),PARTNERSHIP FOR STEM CELL AUTHOR 2 BIOLOGY,PARTNERSHIP FOR STEM CELL BIOLOGY (STEMCELL) REVDAT 7 06-NOV-24 4RWV 1 REMARK REVDAT 6 06-DEC-23 4RWV 1 REMARK REVDAT 5 20-SEP-23 4RWV 1 REMARK REVDAT 4 01-FEB-23 4RWV 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK REVDAT 3 24-JAN-18 4RWV 1 JRNL REVDAT 2 22-NOV-17 4RWV 1 REMARK REVDAT 1 21-JAN-15 4RWV 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG), JRNL AUTH 2 PARTNERSHIP FOR STEM CELL BIOLOGY JRNL TITL CRYSTAL STRUCTURE OF A HOMO SAPIENS HEPATOCYTIC JRNL TITL 2 TRANSCRIPTION FACTOR HB1F-2 (B1F2) IN COMPLEX WITH NUCLEAR JRNL TITL 3 RECEPTOR SUBFAMILY 0 GROUP B MEMBER 1 (NR0B1, RESIDUES JRNL TITL 4 140-154) FROM HUMAN AT 1.86 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.140 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 25914 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1296 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.4668 - 3.8653 0.97 2818 149 0.1613 0.1891 REMARK 3 2 3.8653 - 3.0690 0.97 2727 150 0.1569 0.1897 REMARK 3 3 3.0690 - 2.6814 0.99 2792 141 0.1709 0.2370 REMARK 3 4 2.6814 - 2.4363 0.98 2720 139 0.1812 0.2525 REMARK 3 5 2.4363 - 2.2618 0.98 2744 146 0.1677 0.2074 REMARK 3 6 2.2618 - 2.1285 0.98 2756 149 0.1752 0.2138 REMARK 3 7 2.1285 - 2.0219 0.97 2714 141 0.1936 0.2009 REMARK 3 8 2.0219 - 1.9339 0.98 2726 141 0.2099 0.2590 REMARK 3 9 1.9339 - 1.8595 0.94 2621 140 0.2628 0.3179 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2320 REMARK 3 ANGLE : 1.332 3145 REMARK 3 CHIRALITY : 0.085 354 REMARK 3 PLANARITY : 0.005 389 REMARK 3 DIHEDRAL : 23.489 968 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 297:539 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9366 39.1931 27.2948 REMARK 3 T TENSOR REMARK 3 T11: 0.1438 T22: 0.1465 REMARK 3 T33: 0.1889 T12: -0.0152 REMARK 3 T13: -0.0003 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 1.9460 L22: 1.8299 REMARK 3 L33: 2.9916 L12: 0.3575 REMARK 3 L13: -0.0841 L23: 0.3146 REMARK 3 S TENSOR REMARK 3 S11: -0.0517 S12: -0.1108 S13: 0.0033 REMARK 3 S21: -0.0188 S22: 0.0152 S23: 0.0756 REMARK 3 S31: 0.0144 S32: 0.0399 S33: 0.0316 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND RESID 140:154 REMARK 3 ORIGIN FOR THE GROUP (A): -15.6323 27.3865 35.0438 REMARK 3 T TENSOR REMARK 3 T11: 0.3635 T22: 0.2067 REMARK 3 T33: 0.3781 T12: -0.0973 REMARK 3 T13: 0.0737 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 4.6525 L22: 3.9148 REMARK 3 L33: 2.2825 L12: 1.3655 REMARK 3 L13: -1.4014 L23: 2.1509 REMARK 3 S TENSOR REMARK 3 S11: -0.3032 S12: -0.0952 S13: -0.8336 REMARK 3 S21: 0.4371 S22: -0.0348 S23: 0.1283 REMARK 3 S31: 0.7878 S32: -0.2248 S33: 0.2951 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESID 601:601 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1490 43.1898 43.6405 REMARK 3 T TENSOR REMARK 3 T11: 0.3102 T22: 0.3999 REMARK 3 T33: 0.2552 T12: 0.0747 REMARK 3 T13: 0.0653 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 6.6955 L22: 4.9731 REMARK 3 L33: 7.9150 L12: 0.9394 REMARK 3 L13: 4.1638 L23: 1.6910 REMARK 3 S TENSOR REMARK 3 S11: 0.2828 S12: -0.3265 S13: -0.0651 REMARK 3 S21: 0.4589 S22: 0.2898 S23: 0.1206 REMARK 3 S31: 0.4386 S32: 0.3133 S33: -0.5293 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RWV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000087895. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE JULY 4, 2012 REMARK 200 BUILT=20130617 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25922 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 29.463 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.57700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: PDB ENTRY 1YOK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LRH-1/PIP3, 20% PEG 4K, 0.2M NAOAC, REMARK 280 0.1M TRIS (8.5), 0.036MM PIP3, 0.90MM 15-MER PRQGSILYSLLTSSK, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.80800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.09350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.80800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.09350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 813 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 889 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 GLN A 294 REMARK 465 THR A 295 REMARK 465 SER A 296 REMARK 465 ARG A 540 REMARK 465 ALA A 541 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 365 -56.46 74.25 REMARK 500 ASN A 466 58.06 -100.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PIZ A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-429932 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: JCSG-421170 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 LRH-1 (UNIPROT O00482, LIVER RECEPTOR HOMOLOG 1, NUCLEAR RECEPTOR REMARK 999 SUBFAMILY 5 GROUP A MEMBER 2, NR5A2_HUMAN) LIGAND BINDING DOMAIN REMARK 999 (LBD) WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG REMARK 999 MAHHHHHHVDDDDKMSENLYFQS. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A SERINE (S) FOLLOWED BY AMINO ACID RESIDUES 294-541 REMARK 999 OF THE TARGET SEQUENCE. PEPTIDE CORRESPONDING TO THE DAX1 (NUCLEAR REMARK 999 RECEPTOR DAX1, NR0B1, UNIPROT F1D8P4_HUMAN) RESIDUES 140- REMARK 999 PRQGSILYSLLTSSK-154 WAS CO-CRYSTALLIZED WITH THE LRH-1 LBD DBREF 4RWV A 294 541 UNP O00482 NR5A2_HUMAN 1 248 DBREF 4RWV B 140 154 UNP F1D8P4 F1D8P4_HUMAN 140 154 SEQADV 4RWV SER A 0 UNP O00482 EXPRESSION TAG SEQRES 1 A 249 SER GLN THR SER SER PRO ALA SER ILE PRO HIS LEU ILE SEQRES 2 A 249 LEU GLU LEU LEU LYS CSO GLU PRO ASP GLU PRO GLN VAL SEQRES 3 A 249 GLN ALA LYS ILE MET ALA TYR LEU GLN GLN GLU GLN ALA SEQRES 4 A 249 ASN ARG SER LYS HIS GLU LYS LEU SER THR PHE GLY LEU SEQRES 5 A 249 MET CYS LYS MET ALA ASP GLN THR LEU PHE SER ILE VAL SEQRES 6 A 249 GLU TRP ALA ARG SER SER ILE PHE PHE ARG GLU LEU LYS SEQRES 7 A 249 VAL ASP ASP GLN MET LYS LEU LEU GLN ASN CYS TRP SER SEQRES 8 A 249 GLU LEU LEU ILE LEU ASP HIS ILE TYR ARG GLN VAL VAL SEQRES 9 A 249 HIS GLY LYS GLU GLY SER ILE PHE LEU VAL THR GLY GLN SEQRES 10 A 249 GLN VAL ASP TYR SER ILE ILE ALA SER GLN ALA GLY ALA SEQRES 11 A 249 THR LEU ASN ASN LEU MET SER HIS ALA GLN GLU LEU VAL SEQRES 12 A 249 ALA LYS LEU ARG SER LEU GLN PHE ASP GLN ARG GLU PHE SEQRES 13 A 249 VAL CYS LEU LYS PHE LEU VAL LEU PHE SER LEU ASP VAL SEQRES 14 A 249 LYS ASN LEU GLU ASN PHE GLN LEU VAL GLU GLY VAL GLN SEQRES 15 A 249 GLU GLN VAL ASN ALA ALA LEU LEU ASP TYR THR MET CYS SEQRES 16 A 249 ASN TYR PRO GLN GLN THR GLU LYS PHE GLY GLN LEU LEU SEQRES 17 A 249 LEU ARG LEU PRO GLU ILE ARG ALA ILE SER MET GLN ALA SEQRES 18 A 249 GLU GLU TYR LEU TYR TYR LYS HIS LEU ASN GLY ASP VAL SEQRES 19 A 249 PRO TYR ASN ASN LEU LEU ILE GLU MET LEU HIS ALA LYS SEQRES 20 A 249 ARG ALA SEQRES 1 B 15 PRO ARG GLN GLY SER ILE LEU TYR SER LEU LEU THR SER SEQRES 2 B 15 SER LYS MODRES 4RWV CSO A 311 CYS S-HYDROXYCYSTEINE HET CSO A 311 7 HET PIZ A 601 67 HET EDO A 602 4 HET EDO A 603 4 HET EDO A 604 4 HET EDO A 605 4 HET EDO A 606 4 HET TRS B 201 8 HETNAM CSO S-HYDROXYCYSTEINE HETNAM PIZ (2S)-3-{[(R)-{[(1S,2S,3R,4S,5S,6S)-2,6-DIHYDROXY-3,4,5- HETNAM 2 PIZ TRIS(PHOSPHONOOXY)CYCLOHEXYL]OXY}(HYDROXY) HETNAM 3 PIZ PHOSPHORYL]OXY}PROPANE -1,2-DIYL DIHEXADECANOATE HETNAM EDO 1,2-ETHANEDIOL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN PIZ PI(3,4,5)P3 DIPALMITOYL (16:0, 16:0) HETSYN EDO ETHYLENE GLYCOL HETSYN TRS TRIS BUFFER FORMUL 1 CSO C3 H7 N O3 S FORMUL 3 PIZ C41 H82 O22 P4 FORMUL 4 EDO 5(C2 H6 O2) FORMUL 9 TRS C4 H12 N O3 1+ FORMUL 10 HOH *226(H2 O) HELIX 1 1 PRO A 302 CSO A 311 1 10 HELIX 2 2 ASP A 314 ALA A 331 1 18 HELIX 3 3 SER A 334 LYS A 338 5 5 HELIX 4 4 SER A 340 SER A 362 1 23 HELIX 5 5 PHE A 365 LEU A 369 5 5 HELIX 6 6 LYS A 370 GLY A 398 1 29 HELIX 7 7 TYR A 413 ALA A 420 1 8 HELIX 8 8 GLY A 421 GLN A 442 1 22 HELIX 9 9 ASP A 444 PHE A 457 1 14 HELIX 10 10 ASN A 466 TYR A 489 1 24 HELIX 11 11 GLU A 494 ASN A 523 1 30 HELIX 12 12 ASN A 530 ALA A 538 1 9 HELIX 13 13 SER B 144 SER B 152 1 9 SHEET 1 A 2 SER A 402 PHE A 404 0 SHEET 2 A 2 GLN A 410 ASP A 412 -1 O VAL A 411 N ILE A 403 SSBOND 1 CYS A 487 CYS A 487 1555 2555 2.32 LINK C LYS A 310 N CSO A 311 1555 1555 1.31 LINK C CSO A 311 N GLU A 312 1555 1555 1.33 SITE 1 AC1 24 PHE A 342 ILE A 416 GLN A 419 ALA A 420 SITE 2 AC1 24 GLY A 421 ALA A 422 THR A 423 LEU A 424 SITE 3 AC1 24 ALA A 513 TYR A 516 LYS A 520 HIS A 537 SITE 4 AC1 24 HOH A 716 HOH A 737 HOH A 765 HOH A 771 SITE 5 AC1 24 HOH A 779 HOH A 780 HOH A 882 HOH A 891 SITE 6 AC1 24 HOH A 892 HOH A 893 PRO B 140 ARG B 141 SITE 1 AC2 6 MET A 323 LEU A 326 GLN A 409 TYR A 518 SITE 2 AC2 6 TYR A 519 LEU A 522 SITE 1 AC3 4 ASN A 426 HIS A 430 ALA A 508 GLN A 512 SITE 1 AC4 4 PRO A 298 ASP A 444 ARG A 446 TYR A 489 SITE 1 AC5 6 LYS A 370 ASP A 372 SER A 429 HIS A 430 SITE 2 AC5 6 HOH A 741 HOH A 910 SITE 1 AC6 3 GLN A 474 ASN A 478 LEU A 503 SITE 1 AC7 8 HOH A 834 PRO B 140 ARG B 141 GLN B 142 SITE 2 AC7 8 SER B 144 TYR B 147 HOH B 303 HOH B 305 CRYST1 71.616 50.187 93.608 90.00 109.22 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013963 0.000000 0.004869 0.00000 SCALE2 0.000000 0.019925 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011314 0.00000