HEADER TRANSFERASE 08-DEC-14 4RX1 TITLE CRYSTAL STRUCTURE OF ANTIBIOTIC-RESISTANCE METHYLTRANSFERASE KMR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE RRNA METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.1.179; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SORANGIUM CELLULOSUM; SOURCE 3 ORGANISM_TAXID: 56; SOURCE 4 GENE: KMR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS RNA METHYLTRANSFERASE, METHYLTRANSFERASE, RIBOSOMAL RNA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SAVIC REVDAT 3 28-FEB-24 4RX1 1 REMARK REVDAT 2 29-APR-15 4RX1 1 JRNL REVDAT 1 11-MAR-15 4RX1 0 JRNL AUTH M.SAVIC,S.SUNITA,N.ZELINSKAYA,P.M.DESAI,R.MACMASTER,K.VINAL, JRNL AUTH 2 G.L.CONN JRNL TITL 30S SUBUNIT-DEPENDENT ACTIVATION OF THE SORANGIUM CELLULOSUM JRNL TITL 2 SO CE56 AMINOGLYCOSIDE RESISTANCE-CONFERRING 16S RRNA JRNL TITL 3 METHYLTRANSFERASE KMR. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 59 2807 2015 JRNL REFN ISSN 0066-4804 JRNL PMID 25733511 JRNL DOI 10.1128/AAC.00056-15 REMARK 2 REMARK 2 RESOLUTION. 2.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 21619 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1105 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.3546 - 4.9411 1.00 2748 120 0.2471 0.2744 REMARK 3 2 4.9411 - 3.9232 1.00 2604 132 0.1817 0.2296 REMARK 3 3 3.9232 - 3.4277 1.00 2582 137 0.1938 0.2474 REMARK 3 4 3.4277 - 3.1145 1.00 2541 149 0.2076 0.2630 REMARK 3 5 3.1145 - 2.8913 1.00 2517 151 0.2252 0.2549 REMARK 3 6 2.8913 - 2.7209 1.00 2546 127 0.2292 0.2910 REMARK 3 7 2.7209 - 2.5847 1.00 2549 136 0.2256 0.2725 REMARK 3 8 2.5847 - 2.4720 0.97 2427 153 0.2443 0.3739 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3201 REMARK 3 ANGLE : 1.397 4351 REMARK 3 CHIRALITY : 0.079 494 REMARK 3 PLANARITY : 0.007 567 REMARK 3 DIHEDRAL : 13.237 1170 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:70) REMARK 3 ORIGIN FOR THE GROUP (A): 25.7960 -13.7358 0.1421 REMARK 3 T TENSOR REMARK 3 T11: 0.1331 T22: 0.1471 REMARK 3 T33: 0.2048 T12: -0.0293 REMARK 3 T13: 0.0298 T23: -0.0298 REMARK 3 L TENSOR REMARK 3 L11: 0.5615 L22: 1.0271 REMARK 3 L33: 0.9879 L12: 0.1548 REMARK 3 L13: -0.1786 L23: -0.0255 REMARK 3 S TENSOR REMARK 3 S11: 0.1092 S12: -0.0482 S13: 0.2583 REMARK 3 S21: -0.0370 S22: -0.1351 S23: 0.3265 REMARK 3 S31: -0.0420 S32: -0.2969 S33: 0.0104 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 71:77) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5304 -23.8205 5.0003 REMARK 3 T TENSOR REMARK 3 T11: 0.0714 T22: 0.1371 REMARK 3 T33: 0.0076 T12: -0.1393 REMARK 3 T13: 0.0414 T23: -0.0525 REMARK 3 L TENSOR REMARK 3 L11: 0.0130 L22: 0.0245 REMARK 3 L33: 0.8570 L12: -0.0177 REMARK 3 L13: -0.1075 L23: 0.1478 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: -0.0168 S13: 0.0160 REMARK 3 S21: 0.0456 S22: -0.0208 S23: 0.0062 REMARK 3 S31: 0.0269 S32: -0.0058 S33: -0.0363 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 78:92) REMARK 3 ORIGIN FOR THE GROUP (A): 29.8474 -8.3060 -3.6557 REMARK 3 T TENSOR REMARK 3 T11: 0.1413 T22: 0.1058 REMARK 3 T33: 0.1599 T12: -0.0395 REMARK 3 T13: 0.0426 T23: -0.0641 REMARK 3 L TENSOR REMARK 3 L11: 1.8509 L22: 2.1500 REMARK 3 L33: 1.8867 L12: 1.1521 REMARK 3 L13: -0.9851 L23: -0.9086 REMARK 3 S TENSOR REMARK 3 S11: 0.0319 S12: 0.0402 S13: 0.0797 REMARK 3 S21: -0.1382 S22: -0.0166 S23: 0.0395 REMARK 3 S31: -0.1063 S32: -0.0654 S33: -0.0211 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 93:125) REMARK 3 ORIGIN FOR THE GROUP (A): 40.4785 -4.5336 1.7406 REMARK 3 T TENSOR REMARK 3 T11: 0.2193 T22: 0.0708 REMARK 3 T33: 0.1767 T12: -0.0552 REMARK 3 T13: 0.0174 T23: -0.0323 REMARK 3 L TENSOR REMARK 3 L11: 0.2801 L22: 0.4580 REMARK 3 L33: 0.1365 L12: -0.0785 REMARK 3 L13: 0.0010 L23: 0.0457 REMARK 3 S TENSOR REMARK 3 S11: -0.0245 S12: -0.0803 S13: 0.1076 REMARK 3 S21: 0.1209 S22: -0.0710 S23: 0.1332 REMARK 3 S31: -0.1270 S32: -0.0107 S33: 0.0362 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 126:157) REMARK 3 ORIGIN FOR THE GROUP (A): 46.1638 -7.4511 1.9858 REMARK 3 T TENSOR REMARK 3 T11: 0.2069 T22: 0.1460 REMARK 3 T33: 0.2695 T12: -0.0569 REMARK 3 T13: 0.0537 T23: 0.0580 REMARK 3 L TENSOR REMARK 3 L11: 0.9040 L22: 1.4540 REMARK 3 L33: 1.1315 L12: -0.5237 REMARK 3 L13: -0.3251 L23: 0.5732 REMARK 3 S TENSOR REMARK 3 S11: 0.0326 S12: -0.0591 S13: 0.1490 REMARK 3 S21: 0.0792 S22: -0.1600 S23: -0.0942 REMARK 3 S31: 0.0518 S32: 0.1093 S33: 0.0512 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 158:186) REMARK 3 ORIGIN FOR THE GROUP (A): 48.6376 0.0766 12.0549 REMARK 3 T TENSOR REMARK 3 T11: 0.3161 T22: 0.2139 REMARK 3 T33: 0.2179 T12: -0.1992 REMARK 3 T13: 0.0009 T23: -0.0719 REMARK 3 L TENSOR REMARK 3 L11: 1.4406 L22: 0.6878 REMARK 3 L33: 0.6799 L12: 0.2013 REMARK 3 L13: 0.3772 L23: 0.5294 REMARK 3 S TENSOR REMARK 3 S11: 0.0354 S12: -0.1351 S13: -0.0414 REMARK 3 S21: 0.1768 S22: -0.0977 S23: -0.0200 REMARK 3 S31: 0.0815 S32: -0.0549 S33: -0.1135 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 191:204) REMARK 3 ORIGIN FOR THE GROUP (A): 49.5698 -23.7901 15.8912 REMARK 3 T TENSOR REMARK 3 T11: 1.1889 T22: 1.0024 REMARK 3 T33: 0.9288 T12: 0.0616 REMARK 3 T13: -0.0545 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 0.2647 L22: 0.0759 REMARK 3 L33: 0.4806 L12: 0.1316 REMARK 3 L13: -0.3528 L23: -0.1648 REMARK 3 S TENSOR REMARK 3 S11: 0.0303 S12: -0.2640 S13: -0.3408 REMARK 3 S21: 0.1744 S22: -0.0304 S23: -0.2214 REMARK 3 S31: 0.4052 S32: 0.2377 S33: 0.0240 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 205:217) REMARK 3 ORIGIN FOR THE GROUP (A): 42.3901 -2.2034 11.8694 REMARK 3 T TENSOR REMARK 3 T11: 0.0553 T22: 0.0485 REMARK 3 T33: -0.0192 T12: -0.0827 REMARK 3 T13: 0.0469 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 0.2449 L22: 0.0678 REMARK 3 L33: 0.1915 L12: 0.0780 REMARK 3 L13: -0.0867 L23: -0.1113 REMARK 3 S TENSOR REMARK 3 S11: 0.0370 S12: -0.0708 S13: 0.0357 REMARK 3 S21: 0.0403 S22: -0.0084 S23: 0.0340 REMARK 3 S31: -0.0556 S32: 0.0142 S33: 0.0563 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 1:70) REMARK 3 ORIGIN FOR THE GROUP (A): 47.0013 -32.5405 -1.1473 REMARK 3 T TENSOR REMARK 3 T11: 0.2344 T22: 0.1772 REMARK 3 T33: 0.1711 T12: 0.0361 REMARK 3 T13: 0.1831 T23: 0.0664 REMARK 3 L TENSOR REMARK 3 L11: 0.6320 L22: 0.2327 REMARK 3 L33: 0.4743 L12: 0.0104 REMARK 3 L13: -0.0594 L23: 0.1719 REMARK 3 S TENSOR REMARK 3 S11: -0.2376 S12: 0.0026 S13: -0.1633 REMARK 3 S21: -0.0257 S22: -0.0421 S23: -0.0742 REMARK 3 S31: 0.2121 S32: 0.2706 S33: -0.3136 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 71:92) REMARK 3 ORIGIN FOR THE GROUP (A): 46.3483 -33.5426 -1.4668 REMARK 3 T TENSOR REMARK 3 T11: 0.2250 T22: 0.1794 REMARK 3 T33: 0.1681 T12: -0.0026 REMARK 3 T13: 0.1253 T23: 0.0512 REMARK 3 L TENSOR REMARK 3 L11: 1.2984 L22: 0.7200 REMARK 3 L33: 0.6661 L12: 0.0955 REMARK 3 L13: -0.0039 L23: 0.0104 REMARK 3 S TENSOR REMARK 3 S11: -0.2103 S12: 0.0246 S13: -0.2688 REMARK 3 S21: 0.0441 S22: -0.1114 S23: 0.0159 REMARK 3 S31: 0.2071 S32: 0.0923 S33: 0.0563 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 93:117) REMARK 3 ORIGIN FOR THE GROUP (A): 37.9377 -35.2477 12.1088 REMARK 3 T TENSOR REMARK 3 T11: 0.2284 T22: 0.1659 REMARK 3 T33: 0.1381 T12: 0.0528 REMARK 3 T13: 0.0941 T23: 0.0631 REMARK 3 L TENSOR REMARK 3 L11: 0.1647 L22: 0.6186 REMARK 3 L33: 0.5219 L12: -0.3132 REMARK 3 L13: -0.1609 L23: 0.2291 REMARK 3 S TENSOR REMARK 3 S11: -0.1485 S12: -0.0050 S13: -0.2266 REMARK 3 S21: 0.0195 S22: -0.1405 S23: -0.0320 REMARK 3 S31: 0.2831 S32: 0.1740 S33: -0.1594 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 118:134) REMARK 3 ORIGIN FOR THE GROUP (A): 42.0359 -42.1998 15.1625 REMARK 3 T TENSOR REMARK 3 T11: 0.5629 T22: 0.3071 REMARK 3 T33: 0.3905 T12: 0.1152 REMARK 3 T13: 0.2213 T23: 0.2020 REMARK 3 L TENSOR REMARK 3 L11: 0.5150 L22: 1.2596 REMARK 3 L33: 1.0110 L12: 0.0601 REMARK 3 L13: 0.1627 L23: -0.7559 REMARK 3 S TENSOR REMARK 3 S11: 0.0306 S12: -0.0195 S13: -0.0697 REMARK 3 S21: 0.0018 S22: -0.0515 S23: -0.0424 REMARK 3 S31: 0.1238 S32: 0.0414 S33: 0.0320 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN B AND RESID 135:151) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4941 -30.1693 12.5096 REMARK 3 T TENSOR REMARK 3 T11: 0.1737 T22: 0.2547 REMARK 3 T33: 0.1550 T12: -0.1349 REMARK 3 T13: 0.0572 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.3271 L22: 0.5762 REMARK 3 L33: 0.3320 L12: 0.1344 REMARK 3 L13: 0.0254 L23: -0.1206 REMARK 3 S TENSOR REMARK 3 S11: -0.0585 S12: -0.0241 S13: -0.0409 REMARK 3 S21: -0.0334 S22: -0.0234 S23: 0.0520 REMARK 3 S31: 0.1166 S32: -0.1314 S33: -0.0539 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN B AND RESID 152:178) REMARK 3 ORIGIN FOR THE GROUP (A): 33.5349 -36.1595 25.5566 REMARK 3 T TENSOR REMARK 3 T11: 0.2504 T22: 0.3325 REMARK 3 T33: 0.1324 T12: -0.0525 REMARK 3 T13: 0.0987 T23: 0.0807 REMARK 3 L TENSOR REMARK 3 L11: 0.1257 L22: 0.2999 REMARK 3 L33: 0.1769 L12: -0.0952 REMARK 3 L13: 0.0243 L23: 0.1762 REMARK 3 S TENSOR REMARK 3 S11: -0.1448 S12: -0.0710 S13: -0.1097 REMARK 3 S21: 0.0883 S22: -0.1093 S23: -0.0427 REMARK 3 S31: 0.3162 S32: 0.2098 S33: -0.1279 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN B AND RESID 179:207) REMARK 3 ORIGIN FOR THE GROUP (A): 36.1730 -23.0222 22.6941 REMARK 3 T TENSOR REMARK 3 T11: 0.2063 T22: 0.2978 REMARK 3 T33: 0.1534 T12: -0.0537 REMARK 3 T13: -0.0857 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 4.0266 L22: 2.2830 REMARK 3 L33: 3.6924 L12: -0.5567 REMARK 3 L13: 2.8269 L23: -0.6487 REMARK 3 S TENSOR REMARK 3 S11: -0.2448 S12: 0.1801 S13: 0.2843 REMARK 3 S21: -0.1444 S22: 0.0695 S23: 0.0992 REMARK 3 S31: -0.3291 S32: -0.1414 S33: 0.2189 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN B AND RESID 208:214) REMARK 3 ORIGIN FOR THE GROUP (A): 44.1945 -34.9319 21.7205 REMARK 3 T TENSOR REMARK 3 T11: 0.4358 T22: 0.4332 REMARK 3 T33: 0.1661 T12: 0.2809 REMARK 3 T13: -0.0094 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.2390 L22: 1.5377 REMARK 3 L33: 0.3420 L12: -0.3184 REMARK 3 L13: -0.1903 L23: -0.1418 REMARK 3 S TENSOR REMARK 3 S11: -0.0688 S12: -0.1155 S13: -0.0260 REMARK 3 S21: -0.0277 S22: -0.0289 S23: -0.1143 REMARK 3 S31: 0.1882 S32: 0.2130 S33: -0.0395 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RX1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000087901. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 193 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21690 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.470 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES BUFFER PH 6.1, 6% PEG MME REMARK 280 5000, 8% 1-PROPANOL, 0.5 MM SAM, 100 MM SODIUM IODIDE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.62500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.25000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 85.25000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.62500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 187 REMARK 465 VAL A 188 REMARK 465 PRO A 189 REMARK 465 HIS A 190 REMARK 465 ALA A 218 REMARK 465 SER A 219 REMARK 465 ALA A 220 REMARK 465 ALA A 221 REMARK 465 PRO A 222 REMARK 465 GLY A 223 REMARK 465 GLU B 187 REMARK 465 VAL B 188 REMARK 465 PRO B 189 REMARK 465 HIS B 190 REMARK 465 GLN B 191 REMARK 465 THR B 192 REMARK 465 SER B 193 REMARK 465 TRP B 194 REMARK 465 GLY B 195 REMARK 465 GLN B 196 REMARK 465 HIS B 197 REMARK 465 LEU B 198 REMARK 465 THR B 199 REMARK 465 LEU B 200 REMARK 465 ALA B 201 REMARK 465 SER B 202 REMARK 465 GLY B 215 REMARK 465 GLY B 216 REMARK 465 SER B 217 REMARK 465 ALA B 218 REMARK 465 SER B 219 REMARK 465 ALA B 220 REMARK 465 ALA B 221 REMARK 465 PRO B 222 REMARK 465 GLY B 223 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 GOL A 303 O HOH A 421 2.02 REMARK 500 O HOH A 438 O HOH A 446 2.06 REMARK 500 O3 GOL A 303 O HOH A 418 2.09 REMARK 500 OE2 GLU A 157 O HOH A 467 2.10 REMARK 500 O HOH B 440 O HOH B 442 2.11 REMARK 500 NH1 ARG A 172 O HOH A 426 2.14 REMARK 500 O HOH B 450 O HOH B 454 2.15 REMARK 500 O ASN B 104 O HOH B 461 2.18 REMARK 500 O HOH B 424 O HOH B 461 2.19 REMARK 500 NH2 ARG A 77 O SER B 142 2.19 REMARK 500 OE1 GLU A 18 O HOH A 437 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 74 CZ ARG A 74 NH1 -0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 74 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 LEU A 198 CA - CB - CG ANGL. DEV. = 17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 89 65.41 -155.48 REMARK 500 PRO A 117 -167.51 -104.80 REMARK 500 ARG A 179 -67.48 -91.47 REMARK 500 ASP A 185 -130.31 -104.07 REMARK 500 ALA A 201 -70.39 -97.40 REMARK 500 SER A 202 83.62 72.38 REMARK 500 ARG A 204 -91.65 -84.13 REMARK 500 ALA B 89 67.67 -154.01 REMARK 500 PRO B 117 -166.87 -104.29 REMARK 500 ARG B 179 -66.79 -90.90 REMARK 500 VAL B 184 -164.41 -119.66 REMARK 500 ARG B 205 -156.14 -94.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RWZ RELATED DB: PDB REMARK 900 THE SAME PROTEIN SOLVED BY MOLECULAR REPLACEMENT DBREF 4RX1 A 1 223 UNP B2L3G9 B2L3G9_SORCE 1 223 DBREF 4RX1 B 1 223 UNP B2L3G9 B2L3G9_SORCE 1 223 SEQRES 1 A 223 MET ILE VAL GLN LEU GLY LYS ALA SER VAL THR TRP THR SEQRES 2 A 223 ARG ALA ASP LEU GLU ALA LYS LEU ALA GLY HIS ALA ARG SEQRES 3 A 223 VAL LEU ILE ASP VAL GLY THR GLY ASP GLY ARG PHE VAL SEQRES 4 A 223 TYR ARG SER ALA GLY ALA HIS PRO ASP THR TYR CYS ILE SEQRES 5 A 223 GLY VAL ASP PRO ALA GLY GLU ARG MET ARG GLU VAL SER SEQRES 6 A 223 TRP ARG ALA SER ARG LYS PRO ALA ARG GLY GLY ARG PRO SEQRES 7 A 223 ASN ALA LEU PHE VAL VAL ALA SER VAL GLN ALA LEU PRO SEQRES 8 A 223 GLU GLU LEU ALA GLY LEU ALA HIS THR LEU THR LEU ASN SEQRES 9 A 223 PHE PRO TRP ALA SER LEU LEU SER ALA LEU VAL LEU PRO SEQRES 10 A 223 GLU ALA PRO VAL LEU GLU ALA LEU ARG ARG LEU VAL ARG SEQRES 11 A 223 PRO GLY GLY GLU LEU ILE ALA LEU LEU ASN GLN SER VAL SEQRES 12 A 223 PHE ASP ASP ARG PRO TYR ALA ALA ARG LEU GLY LEU PRO SEQRES 13 A 223 GLU LEU SER ASP ALA TRP LEU ASP ASP ALA LEU ARG PRO SEQRES 14 A 223 ALA TYR ARG ALA ALA GLY PHE GLU ILE ARG THR SER GLU SEQRES 15 A 223 ILE VAL ASP GLY GLU VAL PRO HIS GLN THR SER TRP GLY SEQRES 16 A 223 GLN HIS LEU THR LEU ALA SER GLY ARG ARG THR ARG LEU SEQRES 17 A 223 LEU THR ALA GLU ALA ILE GLY GLY SER ALA SER ALA ALA SEQRES 18 A 223 PRO GLY SEQRES 1 B 223 MET ILE VAL GLN LEU GLY LYS ALA SER VAL THR TRP THR SEQRES 2 B 223 ARG ALA ASP LEU GLU ALA LYS LEU ALA GLY HIS ALA ARG SEQRES 3 B 223 VAL LEU ILE ASP VAL GLY THR GLY ASP GLY ARG PHE VAL SEQRES 4 B 223 TYR ARG SER ALA GLY ALA HIS PRO ASP THR TYR CYS ILE SEQRES 5 B 223 GLY VAL ASP PRO ALA GLY GLU ARG MET ARG GLU VAL SER SEQRES 6 B 223 TRP ARG ALA SER ARG LYS PRO ALA ARG GLY GLY ARG PRO SEQRES 7 B 223 ASN ALA LEU PHE VAL VAL ALA SER VAL GLN ALA LEU PRO SEQRES 8 B 223 GLU GLU LEU ALA GLY LEU ALA HIS THR LEU THR LEU ASN SEQRES 9 B 223 PHE PRO TRP ALA SER LEU LEU SER ALA LEU VAL LEU PRO SEQRES 10 B 223 GLU ALA PRO VAL LEU GLU ALA LEU ARG ARG LEU VAL ARG SEQRES 11 B 223 PRO GLY GLY GLU LEU ILE ALA LEU LEU ASN GLN SER VAL SEQRES 12 B 223 PHE ASP ASP ARG PRO TYR ALA ALA ARG LEU GLY LEU PRO SEQRES 13 B 223 GLU LEU SER ASP ALA TRP LEU ASP ASP ALA LEU ARG PRO SEQRES 14 B 223 ALA TYR ARG ALA ALA GLY PHE GLU ILE ARG THR SER GLU SEQRES 15 B 223 ILE VAL ASP GLY GLU VAL PRO HIS GLN THR SER TRP GLY SEQRES 16 B 223 GLN HIS LEU THR LEU ALA SER GLY ARG ARG THR ARG LEU SEQRES 17 B 223 LEU THR ALA GLU ALA ILE GLY GLY SER ALA SER ALA ALA SEQRES 18 B 223 PRO GLY HET IOD A 301 1 HET IOD A 302 1 HET GOL A 303 6 HET IOD B 301 1 HET IOD B 302 1 HET IOD B 303 1 HETNAM IOD IODIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 IOD 5(I 1-) FORMUL 5 GOL C3 H8 O3 FORMUL 9 HOH *153(H2 O) HELIX 1 1 THR A 13 ALA A 22 1 10 HELIX 2 2 GLY A 36 HIS A 46 1 11 HELIX 3 3 ALA A 57 ARG A 60 5 4 HELIX 4 4 MET A 61 SER A 69 1 9 HELIX 5 5 ARG A 70 GLY A 75 5 6 HELIX 6 6 SER A 86 LEU A 90 5 5 HELIX 7 7 PRO A 91 ALA A 95 5 5 HELIX 8 8 TRP A 107 LEU A 116 1 10 HELIX 9 9 GLU A 118 ARG A 127 1 10 HELIX 10 10 PRO A 148 ARG A 152 5 5 HELIX 11 11 SER A 159 ALA A 166 1 8 HELIX 12 12 ALA A 166 ALA A 173 1 8 HELIX 13 13 SER A 193 ALA A 201 1 9 HELIX 14 14 THR B 13 ALA B 22 1 10 HELIX 15 15 GLY B 36 HIS B 46 1 11 HELIX 16 16 ALA B 57 ARG B 60 5 4 HELIX 17 17 MET B 61 SER B 69 1 9 HELIX 18 18 LYS B 71 GLY B 75 5 5 HELIX 19 19 SER B 86 LEU B 90 5 5 HELIX 20 20 PRO B 91 ALA B 95 5 5 HELIX 21 21 TRP B 107 LEU B 116 1 10 HELIX 22 22 GLU B 118 LEU B 128 1 11 HELIX 23 23 PRO B 148 ARG B 152 5 5 HELIX 24 24 SER B 159 ALA B 173 1 15 SHEET 1 A 2 ILE A 2 LEU A 5 0 SHEET 2 A 2 ALA A 8 THR A 11 -1 O VAL A 10 N VAL A 3 SHEET 1 B 7 ALA A 80 VAL A 84 0 SHEET 2 B 7 THR A 49 ASP A 55 1 N GLY A 53 O VAL A 83 SHEET 3 B 7 ARG A 26 VAL A 31 1 N ASP A 30 O ILE A 52 SHEET 4 B 7 ALA A 98 ASN A 104 1 O THR A 102 N ILE A 29 SHEET 5 B 7 VAL A 129 ASN A 140 1 O GLU A 134 N HIS A 99 SHEET 6 B 7 THR A 206 ALA A 213 -1 O ARG A 207 N LEU A 139 SHEET 7 B 7 PHE A 176 ILE A 183 -1 N GLU A 182 O LEU A 208 SHEET 1 C 9 ALA B 8 THR B 11 0 SHEET 2 C 9 ILE B 2 LEU B 5 -1 N VAL B 3 O VAL B 10 SHEET 3 C 9 ALA B 80 VAL B 84 -1 O PHE B 82 N GLN B 4 SHEET 4 C 9 THR B 49 ASP B 55 1 N GLY B 53 O VAL B 83 SHEET 5 C 9 ARG B 26 VAL B 31 1 N LEU B 28 O ILE B 52 SHEET 6 C 9 ALA B 98 ASN B 104 1 O THR B 102 N VAL B 31 SHEET 7 C 9 VAL B 129 ASN B 140 1 O ILE B 136 N LEU B 101 SHEET 8 C 9 THR B 206 ALA B 213 -1 O LEU B 209 N ALA B 137 SHEET 9 C 9 PHE B 176 ILE B 183 -1 N GLU B 177 O GLU B 212 CISPEP 1 LEU A 116 PRO A 117 0 -1.97 CISPEP 2 SER A 202 GLY A 203 0 3.45 CISPEP 3 LEU B 116 PRO B 117 0 -0.64 SITE 1 AC1 2 TRP B 107 PHE B 144 SITE 1 AC2 10 GLY A 32 ASN A 104 PHE A 105 PRO A 106 SITE 2 AC2 10 TRP A 107 HOH A 417 HOH A 418 HOH A 421 SITE 3 AC2 10 HOH A 427 ARG B 37 SITE 1 AC3 1 PHE A 144 SITE 1 AC4 2 TRP B 107 LEU B 110 SITE 1 AC5 1 ARG A 147 CRYST1 89.506 89.506 127.875 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011172 0.006450 0.000000 0.00000 SCALE2 0.000000 0.012901 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007820 0.00000