HEADER ELECTRON TRANSFER(IRON-SULFUR PROTEIN) 15-OCT-84 4RXN TITLE CRYSTALLOGRAPHIC REFINEMENT OF RUBREDOXIN AT 1.2 ANGSTROMS RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: RUBREDOXIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PASTEURIANUM; SOURCE 3 ORGANISM_TAXID: 1501 KEYWDS ELECTRON TRANSFER(IRON-SULFUR PROTEIN) EXPDTA X-RAY DIFFRACTION AUTHOR K.D.WATENPAUGH,L.C.SIEKER,L.H.JENSEN REVDAT 6 28-FEB-24 4RXN 1 REMARK SEQADV LINK REVDAT 5 25-AUG-09 4RXN 1 SOURCE REVDAT 4 24-FEB-09 4RXN 1 VERSN REVDAT 3 01-APR-03 4RXN 1 JRNL REVDAT 2 15-OCT-91 4RXN 1 REVDAT REVDAT 1 01-APR-85 4RXN 0 SPRSDE 01-APR-85 4RXN 2RXN JRNL AUTH K.D.WATENPAUGH,L.C.SIEKER,L.H.JENSEN JRNL TITL CRYSTALLOGRAPHIC REFINEMENT OF RUBREDOXIN AT 1 X 2 A DEGREES JRNL TITL 2 RESOLUTION. JRNL REF J.MOL.BIOL. V. 138 615 1980 JRNL REFN ISSN 0022-2836 JRNL PMID 7411618 JRNL DOI 10.1016/S0022-2836(80)80020-9 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.D.WATENPAUGH,L.C.SIEKER,L.H.JENSEN REMARK 1 TITL THE STRUCTURE OF RUBREDOXIN AT 1.2 ANGSTROMS RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 131 509 1979 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH K.D.WATENPAUGH,T.N.MARGULIS,L.C.SIEKER,L.H.JENSEN REMARK 1 TITL WATER STRUCTURE IN A PROTEIN CRYSTAL. RUBREDOXIN AT 1.2 REMARK 1 TITL 2 ANGSTROMS RESOLUTION. REMARK 1 REF J.MOL.BIOL. V. 122 175 1978 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH K.D.WATENPAUGH,L.C.SIEKER,J.R.HERRIOTT,L.H.JENSEN REMARK 1 TITL REFINEMENT OF THE MODEL OF A PROTEIN. RUBREDOXIN AT 1.5 REMARK 1 TITL 2 ANGSTROMS RESOLUTION REMARK 1 REF ACTA CRYSTALLOGR.,SECT.B V. 29 943 1973 REMARK 1 REFN ISSN 0108-7681 REMARK 1 REFERENCE 4 REMARK 1 AUTH J.R.HERRIOTT,K.D.WATENPAUGH,L.C.SIEKER,L.H.JENSEN REMARK 1 TITL SEQUENCE OF RUBREDOXIN BY X-RAY DIFFRACTION REMARK 1 REF J.MOL.BIOL. V. 80 423 1973 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 5 REMARK 1 AUTH K.D.WATENPAUGH,L.C.SIEKER,J.R.HERRIOTT,L.H.JENSEN REMARK 1 TITL THE STRUCTURE OF A NON-HEME IRON PROTEIN, RUBREDOXIN AT 1.5 REMARK 1 TITL 2 ANGSTROMS RESOLUTION REMARK 1 REF COLD SPRING HARBOR V. 36 359 1972 REMARK 1 REF 2 SYMP.QUANT.BIOL. REMARK 1 REFN ISSN 0091-7451 REMARK 1 REFERENCE 6 REMARK 1 AUTH K.F.MCCARTHY REMARK 1 TITL THE PRIMARY STRUCTURE OF CLOSTRIDIUM PASTEURIANUM RUBREDOXIN REMARK 1 REF THESIS V. 33 1436 1972 REMARK 1 REFN ISSN 0419-4217 REMARK 1 REFERENCE 7 REMARK 1 AUTH J.R.HERRIOTT,L.C.SIEKER,L.H.JENSEN,W.LOVENBERG REMARK 1 TITL STRUCTURE OF RUBREDOXIN. AN X-RAY STUDY TO 2.5 ANGSTROMS REMARK 1 TITL 2 RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 50 391 1970 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 10936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.128 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 422 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 127 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 EACH HYDROGEN ATOM POSITION HAS BEEN CALCULATED FROM THE REMARK 3 COORDINATES OF THE ATOM IT IS BONDED TO. THE B-VALUE OF REMARK 3 THE HEAVIER ATOM WAS ASSIGNED TO THE HYDROGEN ATOM. REMARK 3 REMARK 3 THE CELL DIMENSIONS VARIED FROM START TO FINISH OF DATA REMARK 3 COLLECTION. THE VALUES GIVEN ARE THOSE AT THE MID-POINT OF REMARK 3 DATA COLLECTION. REMARK 4 REMARK 4 4RXN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000179417. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.14500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.55892 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 10.83000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 32.14500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 18.55892 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 10.83000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 32.14500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 18.55892 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 10.83000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.11785 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 21.66000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 37.11785 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 21.66000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 37.11785 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 21.66000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 53 CA GLU A 54 1.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 53 O HOH A 93 5554 1.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 1 N MET A 1 CA 0.368 REMARK 500 MET A 1 CB MET A 1 CG 0.582 REMARK 500 MET A 1 CG MET A 1 SD 0.265 REMARK 500 MET A 1 SD MET A 1 CE 0.563 REMARK 500 MET A 1 CA MET A 1 C 0.379 REMARK 500 MET A 1 C MET A 1 O -0.219 REMARK 500 MET A 1 C LYS A 2 N 0.246 REMARK 500 LYS A 2 CA LYS A 2 CB 0.217 REMARK 500 LYS A 2 CB LYS A 2 CG -0.539 REMARK 500 TYR A 4 CG TYR A 4 CD1 0.099 REMARK 500 TYR A 4 CE1 TYR A 4 CZ -0.114 REMARK 500 TYR A 4 CE2 TYR A 4 CD2 0.120 REMARK 500 THR A 5 CB THR A 5 CG2 -0.355 REMARK 500 THR A 7 CA THR A 7 CB 0.251 REMARK 500 THR A 7 C THR A 7 O 0.194 REMARK 500 TYR A 11 CB TYR A 11 CG 0.126 REMARK 500 TYR A 11 CE1 TYR A 11 CZ 0.123 REMARK 500 TYR A 11 CZ TYR A 11 CE2 -0.109 REMARK 500 ILE A 12 N ILE A 12 CA -0.176 REMARK 500 ILE A 12 CG1 ILE A 12 CD1 -0.721 REMARK 500 ASP A 14 CG ASP A 14 OD2 0.138 REMARK 500 GLU A 16 CA GLU A 16 CB 0.383 REMARK 500 GLU A 16 CB GLU A 16 CG -0.285 REMARK 500 GLU A 16 CD GLU A 16 OE2 0.100 REMARK 500 GLU A 16 CA GLU A 16 C -0.178 REMARK 500 GLU A 16 C ASP A 17 N -0.154 REMARK 500 ASP A 17 N ASP A 17 CA -0.208 REMARK 500 ASP A 17 CB ASP A 17 CG 0.592 REMARK 500 ASP A 17 CG ASP A 17 OD1 0.222 REMARK 500 ASP A 17 CG ASP A 17 OD2 -0.212 REMARK 500 ASP A 21 CB ASP A 21 CG 0.207 REMARK 500 ASP A 21 CG ASP A 21 OD2 0.393 REMARK 500 ASP A 22 CB ASP A 22 CG 0.209 REMARK 500 ASP A 22 CG ASP A 22 OD1 0.151 REMARK 500 PRO A 26 CA PRO A 26 C -0.160 REMARK 500 GLY A 27 C GLY A 27 O -0.100 REMARK 500 GLY A 27 C THR A 28 N 0.140 REMARK 500 ASP A 29 CA ASP A 29 CB 0.158 REMARK 500 LYS A 31 CA LYS A 31 CB -0.172 REMARK 500 LYS A 31 CB LYS A 31 CG -0.226 REMARK 500 LYS A 31 CG LYS A 31 CD 0.209 REMARK 500 ASP A 32 CB ASP A 32 CG 0.212 REMARK 500 ASP A 32 CG ASP A 32 OD2 -0.387 REMARK 500 PRO A 34 CD PRO A 34 N 0.101 REMARK 500 ASP A 35 CG ASP A 35 OD1 0.145 REMARK 500 ASP A 36 CB ASP A 36 CG -0.142 REMARK 500 ASP A 36 CG ASP A 36 OD1 0.183 REMARK 500 TRP A 37 CE2 TRP A 37 CD2 0.118 REMARK 500 TRP A 37 CE3 TRP A 37 CZ3 0.107 REMARK 500 LEU A 41 CG LEU A 41 CD1 0.454 REMARK 500 REMARK 500 THIS ENTRY HAS 75 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 1 CB - CA - C ANGL. DEV. = -18.4 DEGREES REMARK 500 MET A 1 N - CA - CB ANGL. DEV. = 42.1 DEGREES REMARK 500 MET A 1 CA - CB - CG ANGL. DEV. = -28.6 DEGREES REMARK 500 MET A 1 CB - CG - SD ANGL. DEV. = -19.7 DEGREES REMARK 500 MET A 1 CG - SD - CE ANGL. DEV. = 14.0 DEGREES REMARK 500 MET A 1 N - CA - C ANGL. DEV. = -25.4 DEGREES REMARK 500 MET A 1 CA - C - O ANGL. DEV. = 13.8 DEGREES REMARK 500 MET A 1 CA - C - N ANGL. DEV. = -23.6 DEGREES REMARK 500 LYS A 2 C - N - CA ANGL. DEV. = -24.3 DEGREES REMARK 500 LYS A 2 N - CA - CB ANGL. DEV. = -17.3 DEGREES REMARK 500 LYS A 2 CA - CB - CG ANGL. DEV. = 49.4 DEGREES REMARK 500 TYR A 4 CB - CG - CD2 ANGL. DEV. = 8.1 DEGREES REMARK 500 TYR A 4 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 TYR A 4 CG - CD2 - CE2 ANGL. DEV. = 5.2 DEGREES REMARK 500 TYR A 4 CZ - CE2 - CD2 ANGL. DEV. = -8.1 DEGREES REMARK 500 THR A 5 OG1 - CB - CG2 ANGL. DEV. = 18.4 DEGREES REMARK 500 THR A 5 CA - CB - CG2 ANGL. DEV. = 19.6 DEGREES REMARK 500 THR A 7 OG1 - CB - CG2 ANGL. DEV. = 19.4 DEGREES REMARK 500 THR A 7 O - C - N ANGL. DEV. = 10.2 DEGREES REMARK 500 TYR A 11 CB - CG - CD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 TYR A 11 CD1 - CG - CD2 ANGL. DEV. = 8.8 DEGREES REMARK 500 TYR A 11 CG - CD1 - CE1 ANGL. DEV. = -10.4 DEGREES REMARK 500 TYR A 11 CG - CD2 - CE2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ILE A 12 CA - CB - CG2 ANGL. DEV. = 12.3 DEGREES REMARK 500 ASP A 14 CA - CB - CG ANGL. DEV. = -18.3 DEGREES REMARK 500 ASP A 14 CB - CG - OD1 ANGL. DEV. = 17.6 DEGREES REMARK 500 ASP A 14 CB - CG - OD2 ANGL. DEV. = -27.6 DEGREES REMARK 500 PRO A 15 CB - CG - CD ANGL. DEV. = 23.5 DEGREES REMARK 500 PRO A 15 N - CD - CG ANGL. DEV. = -12.2 DEGREES REMARK 500 GLU A 16 N - CA - CB ANGL. DEV. = -13.8 DEGREES REMARK 500 GLU A 16 CA - CB - CG ANGL. DEV. = -21.2 DEGREES REMARK 500 GLU A 16 OE1 - CD - OE2 ANGL. DEV. = -11.7 DEGREES REMARK 500 GLU A 16 O - C - N ANGL. DEV. = 14.4 DEGREES REMARK 500 ASP A 17 CB - CA - C ANGL. DEV. = -14.0 DEGREES REMARK 500 ASP A 17 N - CA - CB ANGL. DEV. = 14.3 DEGREES REMARK 500 ASP A 17 OD1 - CG - OD2 ANGL. DEV. = 15.6 DEGREES REMARK 500 ASP A 17 CB - CG - OD1 ANGL. DEV. = -43.0 DEGREES REMARK 500 ASP A 17 CB - CG - OD2 ANGL. DEV. = -16.1 DEGREES REMARK 500 ASP A 17 CA - C - N ANGL. DEV. = -13.5 DEGREES REMARK 500 GLY A 18 O - C - N ANGL. DEV. = -14.5 DEGREES REMARK 500 ASP A 19 CB - CG - OD2 ANGL. DEV. = 9.7 DEGREES REMARK 500 ASP A 21 OD1 - CG - OD2 ANGL. DEV. = -27.8 DEGREES REMARK 500 ASP A 21 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 21 N - CA - C ANGL. DEV. = 21.3 DEGREES REMARK 500 ASP A 21 CA - C - O ANGL. DEV. = 15.0 DEGREES REMARK 500 ASP A 22 CB - CG - OD1 ANGL. DEV. = -23.4 DEGREES REMARK 500 ASP A 22 CB - CG - OD2 ANGL. DEV. = 8.7 DEGREES REMARK 500 PRO A 26 N - CD - CG ANGL. DEV. = -10.0 DEGREES REMARK 500 GLY A 27 CA - C - O ANGL. DEV. = 16.2 DEGREES REMARK 500 ASP A 29 OD1 - CG - OD2 ANGL. DEV. = -22.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 95 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 19 66.84 -154.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASP A 14 0.12 SIDE CHAIN REMARK 500 ASP A 17 0.17 SIDE CHAIN REMARK 500 ASP A 21 0.19 SIDE CHAIN REMARK 500 GLU A 48 0.08 SIDE CHAIN REMARK 500 GLU A 53 0.18 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 MET A 1 -10.20 REMARK 500 GLY A 18 -13.00 REMARK 500 LEU A 41 28.35 REMARK 500 GLU A 53 -20.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 55 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 6 SG REMARK 620 2 CYS A 9 SG 113.8 REMARK 620 3 CYS A 39 SG 108.8 103.7 REMARK 620 4 CYS A 42 SG 104.1 114.2 112.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 55 DBREF 4RXN A 1 54 UNP P00268 RUBR_CLOPA 1 54 SEQADV 4RXN ASP A 14 UNP P00268 ASN 14 CONFLICT SEQADV 4RXN ASP A 22 UNP P00268 ASN 22 CONFLICT SEQADV 4RXN GLU A 48 UNP P00268 GLN 48 CONFLICT SEQRES 1 A 54 MET LYS LYS TYR THR CYS THR VAL CYS GLY TYR ILE TYR SEQRES 2 A 54 ASP PRO GLU ASP GLY ASP PRO ASP ASP GLY VAL ASN PRO SEQRES 3 A 54 GLY THR ASP PHE LYS ASP ILE PRO ASP ASP TRP VAL CYS SEQRES 4 A 54 PRO LEU CYS GLY VAL GLY LYS ASP GLU PHE GLU GLU VAL SEQRES 5 A 54 GLU GLU HET FE A 55 1 HETNAM FE FE (III) ION FORMUL 2 FE FE 3+ FORMUL 3 HOH *127(H2 O) HELIX 1 1 PRO A 20 GLY A 23 5 4 HELIX 2 2 ASP A 29 ILE A 33 5 5 SHEET 1 A 3 ILE A 12 TYR A 13 0 SHEET 2 A 3 TYR A 4 CYS A 6 -1 O TYR A 4 N TYR A 13 SHEET 3 A 3 PHE A 49 GLU A 51 -1 O GLU A 50 N THR A 5 LINK SG CYS A 6 FE FE A 55 1555 1555 2.33 LINK SG CYS A 9 FE FE A 55 1555 1555 2.29 LINK SG CYS A 39 FE FE A 55 1555 1555 2.31 LINK SG CYS A 42 FE FE A 55 1555 1555 2.24 SITE 1 AC1 4 CYS A 6 CYS A 9 CYS A 39 CYS A 42 CRYST1 64.290 64.290 32.490 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015550 0.008980 0.000000 0.00000 SCALE2 0.000000 0.017960 0.000000 0.00000 SCALE3 0.000000 0.000000 0.030780 0.00000