HEADER TRANSFERASE 18-DEC-14 4RZ7 TITLE CRYSTAL STRUCTURE OF PVX_084705 WITH BOUND PCI32765 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CGMP-DEPENDENT PROTEIN KINASE, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM VIVAX SAL-1; SOURCE 3 ORGANISM_TAXID: 126793; SOURCE 4 STRAIN: SALVADOR I; SOURCE 5 GENE: PVX_084705; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFBOH-MHL KEYWDS STRUCTURAL GENOMICS CONSORTIUM, SGC, KINASE, PCI32765, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.Q.JIANG,W.TEMPEL,P.LOPPNAU,S.GRASLUND,H.HE,A.SEITOVA, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,R.HUI,A.HUTCHINSON,M.EL AUTHOR 3 BAKKOURI,M.AMANI,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 6 28-FEB-24 4RZ7 1 REMARK SEQADV HETSYN REVDAT 5 22-NOV-17 4RZ7 1 REMARK REVDAT 4 22-JUL-15 4RZ7 1 AUTHOR JRNL REVDAT 3 24-JUN-15 4RZ7 1 AUTHOR JRNL REVDAT 2 11-MAR-15 4RZ7 1 FORMUL HETNAM HETSYN REVDAT 1 14-JAN-15 4RZ7 0 JRNL AUTH D.Q.JIANG,W.TEMPEL,P.LOPPNAU,S.GRASLUND,H.HE,A.SEITOVA, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,R.HUI,A.HUTCHINSON, JRNL AUTH 3 M.EL BAKKOURI,M.AMANI JRNL TITL CRYSTAL STRUCTURE OF PVX_084705 WITH BOUND PCI32765 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9-1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 62639 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 3037 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9459 - 6.5813 0.99 2748 155 0.1735 0.2219 REMARK 3 2 6.5813 - 5.2258 1.00 2765 97 0.1943 0.1967 REMARK 3 3 5.2258 - 4.5658 1.00 2741 138 0.1520 0.1812 REMARK 3 4 4.5658 - 4.1486 1.00 2747 132 0.1457 0.1785 REMARK 3 5 4.1486 - 3.8514 1.00 2745 112 0.1629 0.2188 REMARK 3 6 3.8514 - 3.6244 1.00 2681 162 0.1785 0.2206 REMARK 3 7 3.6244 - 3.4430 1.00 2702 146 0.1827 0.2980 REMARK 3 8 3.4430 - 3.2931 1.00 2719 159 0.1989 0.2311 REMARK 3 9 3.2931 - 3.1664 1.00 2692 142 0.2126 0.2482 REMARK 3 10 3.1664 - 3.0571 1.00 2705 145 0.2136 0.2715 REMARK 3 11 3.0571 - 2.9616 1.00 2684 137 0.2107 0.2191 REMARK 3 12 2.9616 - 2.8769 1.00 2721 153 0.2135 0.2793 REMARK 3 13 2.8769 - 2.8012 1.00 2757 127 0.2203 0.2783 REMARK 3 14 2.8012 - 2.7329 1.00 2672 130 0.2219 0.2603 REMARK 3 15 2.7329 - 2.6707 1.00 2738 135 0.2302 0.2802 REMARK 3 16 2.6707 - 2.6139 1.00 2675 134 0.2362 0.3072 REMARK 3 17 2.6139 - 2.5616 1.00 2695 143 0.2438 0.2922 REMARK 3 18 2.5616 - 2.5133 1.00 2759 120 0.2478 0.3031 REMARK 3 19 2.5133 - 2.4684 1.00 2696 146 0.2538 0.2916 REMARK 3 20 2.4684 - 2.4266 1.00 2701 137 0.2623 0.2902 REMARK 3 21 2.4266 - 2.3874 1.00 2694 145 0.2720 0.2866 REMARK 3 22 2.3874 - 2.3507 0.97 2565 142 0.2920 0.3089 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 6258 REMARK 3 ANGLE : 1.180 8475 REMARK 3 CHIRALITY : 0.048 972 REMARK 3 PLANARITY : 0.006 1116 REMARK 3 DIHEDRAL : 13.911 2245 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ELECTRON DENSITY FAILS TO RESOLVE THE REMARK 3 POSITIONS OF SOME LIGAND ATOMS. TRUNCATION OF THE LIGAND MODEL REMARK 3 RESULTS IN AN APPARENT SYMMETRY THAT CANNOT BE RESOLVED BY THE REMARK 3 ELECTRON DENSITY ALONE. OUR CHOSEN LIGAND POSE IS SUPPORTED BY REMARK 3 PRECEDENT FROM PDB ENTRIES 4IFG AND 4WJC. MOREOVER, OUR POSE REMARK 3 ESTABLISHES ADDITIONAL HYDROGEN BONDS WHEN COMPARED TO THE MOST REMARK 3 PLAUSIBLE ALTERNATIVE POSE. REMARK 4 REMARK 4 4RZ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000087978. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62654 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.72900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, TRIS 8.5, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 96.27800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.71100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 96.27800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 58.71100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 74580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -6.25401 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 67.93173 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 14 REMARK 465 ASN A 15 REMARK 465 ASP A 16 REMARK 465 ASP A 17 REMARK 465 PHE A 18 REMARK 465 SER A 19 REMARK 465 ASP A 102 REMARK 465 LYS A 103 REMARK 465 GLY A 135 REMARK 465 THR A 544 REMARK 465 PHE A 545 REMARK 465 SER A 572 REMARK 465 LEU A 573 REMARK 465 ASN A 574 REMARK 465 GLN A 575 REMARK 465 ALA A 816 REMARK 465 GLU A 817 REMARK 465 ASP A 818 REMARK 465 ILE A 819 REMARK 465 ASP A 820 REMARK 465 ILE A 821 REMARK 465 LYS A 822 REMARK 465 GLN A 823 REMARK 465 ILE A 824 REMARK 465 GLU A 825 REMARK 465 GLU A 826 REMARK 465 GLU A 827 REMARK 465 ASP A 828 REMARK 465 ALA A 829 REMARK 465 LEU A 830 REMARK 465 ASN A 831 REMARK 465 GLU A 832 REMARK 465 GLY A 833 REMARK 465 GLU A 834 REMARK 465 PRO A 835 REMARK 465 LEU A 836 REMARK 465 ASP A 837 REMARK 465 GLY A 838 REMARK 465 ASP A 839 REMARK 465 ASP A 840 REMARK 465 SER A 841 REMARK 465 TRP A 842 REMARK 465 ASP A 843 REMARK 465 VAL A 844 REMARK 465 ASP A 845 REMARK 465 PHE A 846 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 ARG A 6 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 8 CD CE NZ REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 ASP A 22 CG OD1 OD2 REMARK 470 LEU A 24 CG CD1 CD2 REMARK 470 LEU A 31 CD1 CD2 REMARK 470 GLU A 33 CG CD OE1 OE2 REMARK 470 LYS A 34 CD CE NZ REMARK 470 LEU A 35 CD1 CD2 REMARK 470 SER A 36 OG REMARK 470 GLU A 37 CG CD OE1 OE2 REMARK 470 ILE A 39 CD1 REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 LYS A 47 CD CE NZ REMARK 470 THR A 54 OG1 CG2 REMARK 470 ASN A 58 CG OD1 ND2 REMARK 470 ILE A 60 CD1 REMARK 470 LEU A 63 CD1 CD2 REMARK 470 ASN A 65 CG OD1 ND2 REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 ILE A 79 CG1 CG2 CD1 REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 GLN A 81 CG CD OE1 NE2 REMARK 470 GLU A 83 CG CD OE1 OE2 REMARK 470 LYS A 84 CE NZ REMARK 470 ILE A 90 CD1 REMARK 470 LYS A 95 CG CD CE NZ REMARK 470 ASP A 97 CB CG OD1 OD2 REMARK 470 TYR A 99 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL A 100 CG1 CG2 REMARK 470 LYS A 104 CE NZ REMARK 470 VAL A 105 CG1 CG2 REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 ASN A 122 CG OD1 ND2 REMARK 470 THR A 123 OG1 CG2 REMARK 470 GLN A 124 CG CD OE1 NE2 REMARK 470 ILE A 129 CD1 REMARK 470 GLU A 132 CG CD OE1 OE2 REMARK 470 THR A 133 OG1 CG2 REMARK 470 LYS A 150 NZ REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 GLU A 194 CG CD OE1 OE2 REMARK 470 LYS A 198 CE NZ REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 GLU A 211 CG CD OE1 OE2 REMARK 470 LYS A 213 CG CD CE NZ REMARK 470 LYS A 221 CG CD CE NZ REMARK 470 ILE A 223 CG1 CG2 CD1 REMARK 470 ARG A 224 CZ NH1 NH2 REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 ILE A 248 CD1 REMARK 470 LYS A 250 CG CD CE NZ REMARK 470 ILE A 258 CD1 REMARK 470 LYS A 261 CG CD CE NZ REMARK 470 GLU A 287 CG CD OE1 OE2 REMARK 470 GLU A 295 CD OE1 OE2 REMARK 470 LYS A 318 CD CE NZ REMARK 470 ASP A 319 CG OD1 OD2 REMARK 470 LYS A 320 CG CD CE NZ REMARK 470 LYS A 322 CB CG CD CE NZ REMARK 470 LYS A 350 CE NZ REMARK 470 LYS A 363 CG CD CE NZ REMARK 470 ASN A 392 OD1 ND2 REMARK 470 GLN A 418 CG CD OE1 NE2 REMARK 470 ARG A 428 CD NE CZ NH1 NH2 REMARK 470 ARG A 431 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 438 CD1 REMARK 470 GLU A 457 CG CD OE1 OE2 REMARK 470 LYS A 460 CE NZ REMARK 470 LYS A 463 CG CD CE NZ REMARK 470 ARG A 466 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 470 NZ REMARK 470 LYS A 492 CG CD CE NZ REMARK 470 SER A 495 OG REMARK 470 ASP A 526 OD1 OD2 REMARK 470 LYS A 528 CG CD CE NZ REMARK 470 GLU A 535 OE1 OE2 REMARK 470 ILE A 539 CG1 CG2 CD1 REMARK 470 ARG A 542 CD NE CZ NH1 NH2 REMARK 470 LYS A 549 CG CD CE NZ REMARK 470 LYS A 554 CG CD CE NZ REMARK 470 SER A 566 OG REMARK 470 LYS A 567 CD CE NZ REMARK 470 ARG A 568 CG CD NE CZ NH1 NH2 REMARK 470 SER A 569 OG REMARK 470 ILE A 570 CG1 CG2 CD1 REMARK 470 GLN A 576 CG CD OE1 NE2 REMARK 470 ILE A 579 CD1 REMARK 470 LYS A 580 CG CD CE NZ REMARK 470 GLU A 584 CG CD OE1 OE2 REMARK 470 ARG A 599 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 602 CD CE NZ REMARK 470 ASN A 605 CG OD1 ND2 REMARK 470 ASP A 675 OD1 OD2 REMARK 470 ASP A 732 CG OD1 OD2 REMARK 470 GLU A 734 CG CD OE1 OE2 REMARK 470 LEU A 744 CD1 CD2 REMARK 470 GLU A 805 CD OE1 OE2 REMARK 470 LYS A 811 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 1 N REMARK 480 GLU A 5 CD REMARK 480 GLU A 26 CD REMARK 480 ARG A 235 CZ REMARK 480 GLU A 241 CD REMARK 480 GLN A 271 CD REMARK 480 GLU A 441 CD REMARK 480 ARG A 447 CZ REMARK 480 HIS A 553 C REMARK 480 ARG A 583 CZ REMARK 480 GLU A 650 CD REMARK 480 ARG A 651 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 78 -67.52 -127.69 REMARK 500 SER A 86 -11.11 -149.37 REMARK 500 VAL A 105 -39.12 -146.25 REMARK 500 ASN A 122 66.09 -67.26 REMARK 500 ASP A 220 11.50 56.52 REMARK 500 ARG A 224 178.86 179.62 REMARK 500 GLU A 251 158.64 85.36 REMARK 500 LYS A 318 -108.14 48.32 REMARK 500 ASP A 339 -118.07 52.97 REMARK 500 ASN A 471 -0.82 68.75 REMARK 500 LYS A 492 48.45 -106.69 REMARK 500 GLU A 537 -128.88 -135.99 REMARK 500 VAL A 598 -63.25 -96.28 REMARK 500 ASP A 603 -158.57 -155.41 REMARK 500 ARG A 656 -5.78 72.97 REMARK 500 LEU A 767 31.18 -93.72 REMARK 500 SER A 778 -155.82 -103.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1E8 A 901 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1E8 A 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MYI RELATED DB: PDB REMARK 900 RELATED ID: 4WJC RELATED DB: PDB REMARK 900 RELATED ID: 4RZ0 RELATED DB: PDB DBREF 4RZ7 A 1 846 UNP A5K0N4 A5K0N4_PLAVS 1 846 SEQADV 4RZ7 GLY A 0 UNP A5K0N4 EXPRESSION TAG SEQRES 1 A 847 GLY MET ARG CYS ASN GLU ARG ASN LYS LYS LYS ALA ILE SEQRES 2 A 847 PHE SER ASN ASP ASP PHE SER GLY GLU ASP THR LEU MET SEQRES 3 A 847 GLU ASP HIS LEU GLN LEU ARG GLU LYS LEU SER GLU ASP SEQRES 4 A 847 ILE GLU MET ILE LYS ALA SER LEU LYS ASN ASN LEU VAL SEQRES 5 A 847 CYS SER THR LEU ASN ASP ASN GLU ILE LEU THR LEU SER SEQRES 6 A 847 ASN TYR MET GLN PHE PHE VAL PHE LYS GLY GLY ASP LEU SEQRES 7 A 847 VAL ILE LYS GLN GLY GLU LYS GLY SER TYR PHE PHE ILE SEQRES 8 A 847 ILE ASN SER GLY LYS PHE ASP VAL TYR VAL ASN ASP LYS SEQRES 9 A 847 LYS VAL LYS SER MET GLY LYS GLY SER SER PHE GLY GLU SEQRES 10 A 847 ALA ALA LEU ILE HIS ASN THR GLN ARG SER ALA THR ILE SEQRES 11 A 847 MET ALA GLU THR ASP GLY THR LEU TRP GLY VAL GLN ARG SEQRES 12 A 847 SER THR PHE ARG ALA THR LEU LYS GLN LEU SER ASN ARG SEQRES 13 A 847 ASN PHE ASN GLU ASN ARG SER PHE ILE ASP SER VAL SER SEQRES 14 A 847 VAL PHE ASP MET LEU THR GLU ALA GLN LYS ASN MET ILE SEQRES 15 A 847 THR ASN ALA CYS VAL ILE GLN MET PHE LYS PRO GLY GLU SEQRES 16 A 847 THR ILE VAL LYS GLN GLY ASP TYR GLY ASP VAL LEU PHE SEQRES 17 A 847 ILE LEU LYS GLU GLY LYS ALA THR VAL PHE ILE ASN ASP SEQRES 18 A 847 LYS GLU ILE ARG VAL LEU ASN LYS GLY SER TYR PHE GLY SEQRES 19 A 847 GLU ARG ALA LEU LEU TYR ASP GLU PRO ARG SER ALA THR SEQRES 20 A 847 ILE ILE ALA LYS GLU PRO THR ALA CYS ALA SER ILE CYS SEQRES 21 A 847 ARG LYS LEU LEU ASN ILE VAL LEU GLY ASN LEU GLN VAL SEQRES 22 A 847 VAL LEU PHE ARG ASN ILE MET THR GLU ALA LEU GLN GLN SEQRES 23 A 847 SER GLU ILE PHE ARG GLN PHE SER ALA GLU GLN LEU ASN SEQRES 24 A 847 ASP LEU ALA ASP THR ALA ILE VAL ARG ASP TYR PRO ALA SEQRES 25 A 847 ASN TYR HIS ILE LEU HIS LYS ASP LYS VAL LYS SER VAL SEQRES 26 A 847 LYS TYR LEU ILE VAL LEU GLU GLY LYS VAL GLU LEU PHE SEQRES 27 A 847 LEU ASP ASP GLU SER ILE GLY ILE LEU THR ARG GLY LYS SEQRES 28 A 847 SER PHE GLY ASP GLN TYR VAL LEU ASN GLN LYS GLN LYS SEQRES 29 A 847 PHE ARG HIS THR VAL LYS SER LEU ASP VAL CYS LYS ILE SEQRES 30 A 847 ALA LEU ILE THR GLU SER CYS LEU ALA ASP CYS LEU GLY SEQRES 31 A 847 ASP ASN ASN ILE ASP ALA SER ILE ASP HIS ASN ASN LYS SEQRES 32 A 847 LYS SER ILE ILE LYS LYS MET TYR ILE PHE ARG TYR LEU SEQRES 33 A 847 SER GLU GLN GLN CYS ASN LEU LEU ILE GLU ALA PHE ARG SEQRES 34 A 847 THR THR ARG TYR GLU GLU GLY ASP TYR ILE ILE GLN GLU SEQRES 35 A 847 GLY GLU VAL GLY SER ARG PHE TYR ILE ILE LYS ASN GLY SEQRES 36 A 847 GLU VAL GLU VAL THR LYS ASN GLY LYS ARG LEU ARG THR SEQRES 37 A 847 LEU GLY LYS ASN ASP TYR PHE GLY GLU ARG ALA LEU LEU SEQRES 38 A 847 TYR ASP GLU PRO ARG THR ALA SER ILE ILE SER LYS ALA SEQRES 39 A 847 THR SER VAL GLU CYS TRP PHE VAL ASP LYS SER VAL PHE SEQRES 40 A 847 LEU GLN ILE ILE GLN GLY PRO MET LEU THR HIS LEU GLU SEQRES 41 A 847 GLU ARG ILE LYS MET GLN ASP THR LYS VAL GLU MET HIS SEQRES 42 A 847 GLU LEU GLU THR GLU ARG ILE ILE GLY ARG GLY THR PHE SEQRES 43 A 847 GLY THR VAL LYS LEU VAL HIS HIS LYS PRO THR GLN ILE SEQRES 44 A 847 ARG TYR ALA LEU LYS CYS VAL SER LYS ARG SER ILE ILE SEQRES 45 A 847 SER LEU ASN GLN GLN ASN ASN ILE LYS LEU GLU ARG GLU SEQRES 46 A 847 ILE THR ALA GLU ASN ASP HIS PRO PHE ILE ILE ARG LEU SEQRES 47 A 847 VAL ARG THR PHE LYS ASP SER ASN CYS PHE TYR PHE LEU SEQRES 48 A 847 THR GLU LEU VAL THR GLY GLY GLU LEU TYR ASP ALA ILE SEQRES 49 A 847 ARG LYS LEU GLY LEU LEU SER LYS PRO GLN ALA GLN PHE SEQRES 50 A 847 TYR LEU GLY SER ILE ILE LEU ALA ILE GLU TYR LEU HIS SEQRES 51 A 847 GLU ARG ASN ILE VAL TYR ARG ASP LEU LYS PRO GLU ASN SEQRES 52 A 847 ILE LEU LEU ASP LYS GLN GLY TYR VAL LYS LEU ILE ASP SEQRES 53 A 847 PHE GLY CYS ALA LYS LYS ILE GLN GLY ARG ALA TYR THR SEQRES 54 A 847 LEU VAL GLY THR PRO HIS TYR MET ALA PRO GLU VAL ILE SEQRES 55 A 847 LEU GLY LYS GLY TYR GLY CYS THR VAL ASP ILE TRP ALA SEQRES 56 A 847 LEU GLY VAL CYS LEU TYR GLU PHE ILE CYS GLY PRO LEU SEQRES 57 A 847 PRO PHE GLY ASN ASP GLN GLU ASP GLN LEU GLU ILE PHE SEQRES 58 A 847 ARG ASP ILE LEU THR GLY GLN LEU THR PHE PRO ASP TYR SEQRES 59 A 847 VAL SER ASP GLN ASP SER ILE ASN LEU MET LYS ARG LEU SEQRES 60 A 847 LEU CYS ARG LEU PRO GLN GLY ARG ILE GLY CYS SER ILE SEQRES 61 A 847 ASN GLY PHE LYS ASP ILE LYS GLU HIS ALA PHE PHE GLY SEQRES 62 A 847 ASN PHE ASN TRP ASP LYS LEU ALA GLY ARG LEU LEU GLU SEQRES 63 A 847 PRO PRO LEU VAL SER LYS GLY GLU THR TYR ALA GLU ASP SEQRES 64 A 847 ILE ASP ILE LYS GLN ILE GLU GLU GLU ASP ALA LEU ASN SEQRES 65 A 847 GLU GLY GLU PRO LEU ASP GLY ASP ASP SER TRP ASP VAL SEQRES 66 A 847 ASP PHE HET 1E8 A 901 24 HET UNX A 902 1 HET UNX A 903 1 HET UNX A 904 1 HET UNX A 905 1 HET UNX A 906 1 HET UNX A 907 1 HET UNX A 908 1 HET UNX A 909 1 HET UNX A 910 1 HET UNX A 911 1 HET UNX A 912 1 HET UNX A 913 1 HET UNX A 914 1 HET UNX A 915 1 HET UNX A 916 1 HET UNX A 917 1 HET UNX A 918 1 HET UNX A 919 1 HET UNX A 920 1 HET UNX A 921 1 HET UNX A 922 1 HET UNX A 923 1 HET UNX A 924 1 HET UNX A 925 1 HET UNX A 926 1 HET UNX A 927 1 HET UNX A 928 1 HET UNX A 929 1 HET UNX A 930 1 HET UNX A 931 1 HET UNX A 932 1 HET UNX A 933 1 HET UNX A 934 1 HET UNX A 935 1 HET UNX A 936 1 HET UNX A 937 1 HET UNX A 938 1 HET UNX A 939 1 HET UNX A 940 1 HET UNX A 941 1 HET UNX A 942 1 HET UNX A 943 1 HET UNX A 944 1 HET UNX A 945 1 HET UNX A 946 1 HET UNX A 947 1 HET UNX A 948 1 HET UNX A 949 1 HET UNX A 950 1 HET UNX A 951 1 HET UNX A 952 1 HET UNX A 953 1 HET UNX A 954 1 HET UNX A 955 1 HET UNX A 956 1 HET UNX A 957 1 HET UNX A 958 1 HET UNX A 959 1 HET UNX A 960 1 HET UNX A 961 1 HET UNX A 962 1 HET UNX A 963 1 HET UNX A 964 1 HET UNX A 965 1 HET UNX A 966 1 HET UNX A 967 1 HETNAM 1E8 1-{(3R)-3-[4-AMINO-3-(4-PHENOXYPHENYL)-1H-PYRAZOLO[3,4- HETNAM 2 1E8 D]PYRIMIDIN-1-YL]PIPERIDIN-1-YL}PROP-2-EN-1-ONE HETNAM UNX UNKNOWN ATOM OR ION HETSYN 1E8 IMBRUVICA; PCI-32765 FORMUL 2 1E8 C25 H24 N6 O2 FORMUL 3 UNX 66(X) FORMUL 69 HOH *273(H2 O) HELIX 1 1 GLU A 21 GLU A 26 1 6 HELIX 2 2 LEU A 35 LYS A 47 1 13 HELIX 3 3 ASN A 56 TYR A 66 1 11 HELIX 4 4 GLU A 116 ILE A 120 5 5 HELIX 5 5 ARG A 142 SER A 166 1 25 HELIX 6 6 VAL A 167 ASP A 171 5 5 HELIX 7 7 THR A 174 ASN A 183 1 10 HELIX 8 8 GLY A 233 LEU A 238 5 6 HELIX 9 9 ARG A 260 GLY A 268 1 9 HELIX 10 10 ASN A 269 GLN A 284 1 16 HELIX 11 11 ILE A 288 PHE A 292 5 5 HELIX 12 12 SER A 293 ALA A 304 1 12 HELIX 13 13 GLY A 353 ASN A 359 1 7 HELIX 14 14 GLU A 381 GLY A 389 1 9 HELIX 15 15 ASN A 392 LYS A 407 1 16 HELIX 16 16 MET A 409 TYR A 414 1 6 HELIX 17 17 SER A 416 PHE A 427 1 12 HELIX 18 18 GLY A 475 LEU A 480 5 6 HELIX 19 19 LYS A 503 GLN A 508 1 6 HELIX 20 20 GLN A 511 THR A 527 1 17 HELIX 21 21 GLU A 530 HIS A 532 5 3 HELIX 22 22 ARG A 568 ILE A 570 5 3 HELIX 23 23 ASN A 577 ASN A 589 1 13 HELIX 24 24 GLU A 618 GLY A 627 1 10 HELIX 25 25 SER A 630 ARG A 651 1 22 HELIX 26 26 LYS A 659 GLU A 661 5 3 HELIX 27 27 THR A 692 MET A 696 5 5 HELIX 28 28 ALA A 697 GLY A 703 1 7 HELIX 29 29 THR A 709 CYS A 724 1 16 HELIX 30 30 ASP A 735 GLY A 746 1 12 HELIX 31 31 ASP A 756 LEU A 767 1 12 HELIX 32 32 LEU A 770 ARG A 774 5 5 HELIX 33 33 PHE A 782 GLU A 787 1 6 HELIX 34 34 HIS A 788 GLY A 792 5 5 HELIX 35 35 ASN A 795 GLY A 801 1 7 SHEET 1 A 4 GLN A 68 PHE A 70 0 SHEET 2 A 4 LEU A 137 GLN A 141 -1 O GLY A 139 N GLN A 68 SHEET 3 A 4 TYR A 87 ILE A 91 -1 N ILE A 90 O TRP A 138 SHEET 4 A 4 SER A 113 PHE A 114 -1 O PHE A 114 N PHE A 89 SHEET 1 B 3 LYS A 106 MET A 108 0 SHEET 2 B 3 PHE A 96 VAL A 98 -1 N PHE A 96 O MET A 108 SHEET 3 B 3 ILE A 129 ALA A 131 -1 O MET A 130 N ASP A 97 SHEET 1 C 4 VAL A 186 PHE A 190 0 SHEET 2 C 4 THR A 246 CYS A 259 -1 O SER A 257 N VAL A 186 SHEET 3 C 4 VAL A 205 ILE A 218 -1 N THR A 215 O ILE A 248 SHEET 4 C 4 LYS A 221 ASN A 227 -1 O LEU A 226 N ALA A 214 SHEET 1 D 4 THR A 195 VAL A 197 0 SHEET 2 D 4 THR A 246 CYS A 259 -1 O ILE A 247 N VAL A 197 SHEET 3 D 4 VAL A 205 ILE A 218 -1 N THR A 215 O ILE A 248 SHEET 4 D 4 TYR A 231 PHE A 232 -1 O PHE A 232 N PHE A 207 SHEET 1 E 4 ILE A 305 TYR A 309 0 SHEET 2 E 4 CYS A 374 THR A 380 -1 O ILE A 376 N ARG A 307 SHEET 3 E 4 VAL A 324 GLU A 331 -1 N LYS A 325 O ILE A 379 SHEET 4 E 4 SER A 351 PHE A 352 -1 O PHE A 352 N LEU A 327 SHEET 1 F 4 HIS A 314 HIS A 317 0 SHEET 2 F 4 HIS A 366 SER A 370 -1 O VAL A 368 N LEU A 316 SHEET 3 F 4 VAL A 334 LEU A 338 -1 N PHE A 337 O THR A 367 SHEET 4 F 4 GLU A 341 LEU A 346 -1 O GLY A 344 N LEU A 336 SHEET 1 G 4 ARG A 428 TYR A 432 0 SHEET 2 G 4 VAL A 496 ASP A 502 -1 O VAL A 496 N TYR A 432 SHEET 3 G 4 ARG A 447 ASN A 453 -1 N ILE A 450 O TRP A 499 SHEET 4 G 4 TYR A 473 PHE A 474 -1 O PHE A 474 N TYR A 449 SHEET 1 H 4 TYR A 437 ILE A 439 0 SHEET 2 H 4 SER A 488 SER A 491 -1 O ILE A 489 N ILE A 439 SHEET 3 H 4 VAL A 456 LYS A 460 -1 N THR A 459 O SER A 488 SHEET 4 H 4 LYS A 463 LEU A 468 -1 O LEU A 465 N VAL A 458 SHEET 1 I 5 LEU A 534 GLY A 541 0 SHEET 2 I 5 THR A 547 HIS A 553 -1 O VAL A 548 N ILE A 540 SHEET 3 I 5 ARG A 559 SER A 566 -1 O CYS A 564 N THR A 547 SHEET 4 I 5 CYS A 606 THR A 611 -1 O PHE A 607 N VAL A 565 SHEET 5 I 5 LEU A 597 LYS A 602 -1 N VAL A 598 O LEU A 610 SHEET 1 J 2 ILE A 653 VAL A 654 0 SHEET 2 J 2 LYS A 680 LYS A 681 -1 O LYS A 680 N VAL A 654 SHEET 1 K 2 ILE A 663 LEU A 665 0 SHEET 2 K 2 VAL A 671 LEU A 673 -1 O LYS A 672 N LEU A 664 SITE 1 AC1 11 ILE A 540 ALA A 561 LYS A 563 THR A 586 SITE 2 AC1 11 ILE A 595 PHE A 609 THR A 611 GLU A 612 SITE 3 AC1 11 LEU A 613 VAL A 614 ILE A 674 CRYST1 192.556 117.422 68.219 90.00 95.26 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005193 0.000000 0.000478 0.00000 SCALE2 0.000000 0.008516 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014721 0.00000