data_4RZD # _entry.id 4RZD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI NDB NA3334 ? ? RCSB RCSB087984 ? ? PDB 4RZD pdb_00004rzd 10.2210/pdb4rzd/pdb WWPDB D_1000087984 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-07-01 2 'Structure model' 1 1 2015-07-22 3 'Structure model' 1 2 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_conn 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4RZD _pdbx_database_status.recvd_initial_deposition_date 2014-12-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wedekind, J.E.' 1 'Liberman, J.A.' 2 'Salim, M.' 3 # _citation.id primary _citation.title ;Structural analysis of a class III preQ1 riboswitch reveals an aptamer distant from a ribosome-binding site regulated by fast dynamics. ; _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 112 _citation.page_first E3485 _citation.page_last E3494 _citation.year 2015 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26106162 _citation.pdbx_database_id_DOI 10.1073/pnas.1503955112 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liberman, J.A.' 1 ? primary 'Suddala, K.C.' 2 ? primary 'Aytenfisu, A.' 3 ? primary 'Chan, D.' 4 ? primary 'Belashov, I.A.' 5 ? primary 'Salim, M.' 6 ? primary 'Mathews, D.H.' 7 ? primary 'Spitale, R.C.' 8 ? primary 'Walter, N.G.' 9 ? primary 'Wedekind, J.E.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'PreQ1-III Riboswitch (Class 3)' 32639.254 1 ? ? ? ? 2 non-polymer syn 7-DEAZA-7-AMINOMETHYL-GUANINE 179.179 1 ? ? ? ? 3 water nat water 18.015 4 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(GTP)AGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCAUAGGGCUGGCGGUCCCUG UGCGGUCAAAAUUCAUCCGCCGGAG ; _entity_poly.pdbx_seq_one_letter_code_can ;GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCAUAGGGCUGGCGGUCCCUGUGCG GUCAAAAUUCAUCCGCCGGAG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 7-DEAZA-7-AMINOMETHYL-GUANINE PRF 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 A n 1 3 G n 1 4 C n 1 5 A n 1 6 A n 1 7 C n 1 8 U n 1 9 U n 1 10 A n 1 11 G n 1 12 G n 1 13 A n 1 14 U n 1 15 U n 1 16 U n 1 17 U n 1 18 A n 1 19 G n 1 20 G n 1 21 C n 1 22 U n 1 23 C n 1 24 C n 1 25 C n 1 26 C n 1 27 G n 1 28 G n 1 29 C n 1 30 G n 1 31 U n 1 32 G n 1 33 U n 1 34 C n 1 35 U n 1 36 C n 1 37 G n 1 38 A n 1 39 A n 1 40 C n 1 41 C n 1 42 A n 1 43 U n 1 44 G n 1 45 C n 1 46 C n 1 47 G n 1 48 G n 1 49 G n 1 50 C n 1 51 C n 1 52 A n 1 53 A n 1 54 A n 1 55 C n 1 56 C n 1 57 C n 1 58 A n 1 59 U n 1 60 A n 1 61 G n 1 62 G n 1 63 G n 1 64 C n 1 65 U n 1 66 G n 1 67 G n 1 68 C n 1 69 G n 1 70 G n 1 71 U n 1 72 C n 1 73 C n 1 74 C n 1 75 U n 1 76 G n 1 77 U n 1 78 G n 1 79 C n 1 80 G n 1 81 G n 1 82 U n 1 83 C n 1 84 A n 1 85 A n 1 86 A n 1 87 A n 1 88 U n 1 89 U n 1 90 C n 1 91 A n 1 92 U n 1 93 C n 1 94 C n 1 95 G n 1 96 C n 1 97 C n 1 98 G n 1 99 G n 1 100 A n 1 101 G n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Faecalibacterium prausnitzii' _entity_src_nat.pdbx_ncbi_taxonomy_id 853 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 PRF non-polymer . 7-DEAZA-7-AMINOMETHYL-GUANINE ? 'C7 H9 N5 O' 179.179 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 1 1 GTP GTP A . n A 1 2 A 2 2 2 A A A . n A 1 3 G 3 3 3 G G A . n A 1 4 C 4 4 4 C C A . n A 1 5 A 5 5 5 A A A . n A 1 6 A 6 6 6 A A A . n A 1 7 C 7 7 7 C C A . n A 1 8 U 8 8 8 U U A . n A 1 9 U 9 9 9 U U A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 G 12 12 12 G G A . n A 1 13 A 13 13 13 A A A . n A 1 14 U 14 14 14 U U A . n A 1 15 U 15 15 15 U U A . n A 1 16 U 16 16 16 U U A . n A 1 17 U 17 17 17 U U A . n A 1 18 A 18 18 18 A A A . n A 1 19 G 19 19 19 G G A . n A 1 20 G 20 20 20 G G A . n A 1 21 C 21 21 21 C C A . n A 1 22 U 22 22 22 U U A . n A 1 23 C 23 23 23 C C A . n A 1 24 C 24 24 24 C C A . n A 1 25 C 25 25 25 C C A . n A 1 26 C 26 26 26 C C A . n A 1 27 G 27 27 27 G G A . n A 1 28 G 28 28 28 G G A . n A 1 29 C 29 29 29 C C A . n A 1 30 G 30 30 30 G G A . n A 1 31 U 31 31 31 U U A . n A 1 32 G 32 32 32 G G A . n A 1 33 U 33 33 33 U U A . n A 1 34 C 34 34 ? ? ? A . n A 1 35 U 35 35 ? ? ? A . n A 1 36 C 36 36 36 C C A . n A 1 37 G 37 37 37 G G A . n A 1 38 A 38 38 38 A A A . n A 1 39 A 39 39 39 A A A . n A 1 40 C 40 40 40 C C A . n A 1 41 C 41 41 41 C C A . n A 1 42 A 42 42 42 A A A . n A 1 43 U 43 43 43 U U A . n A 1 44 G 44 44 44 G G A . n A 1 45 C 45 45 45 C C A . n A 1 46 C 46 46 46 C C A . n A 1 47 G 47 47 47 G G A . n A 1 48 G 48 48 48 G G A . n A 1 49 G 49 49 49 G G A . n A 1 50 C 50 50 50 C C A . n A 1 51 C 51 51 51 C C A . n A 1 52 A 52 52 52 A A A . n A 1 53 A 53 53 53 A A A . n A 1 54 A 54 54 54 A A A . n A 1 55 C 55 55 55 C C A . n A 1 56 C 56 56 56 C C A . n A 1 57 C 57 57 57 C C A . n A 1 58 A 58 58 58 A A A . n A 1 59 U 59 59 59 U U A . n A 1 60 A 60 60 60 A A A . n A 1 61 G 61 61 61 G G A . n A 1 62 G 62 62 62 G G A . n A 1 63 G 63 63 63 G G A . n A 1 64 C 64 64 64 C C A . n A 1 65 U 65 65 65 U U A . n A 1 66 G 66 66 66 G G A . n A 1 67 G 67 67 67 G G A . n A 1 68 C 68 68 68 C C A . n A 1 69 G 69 69 69 G G A . n A 1 70 G 70 70 70 G G A . n A 1 71 U 71 71 71 U U A . n A 1 72 C 72 72 72 C C A . n A 1 73 C 73 73 73 C C A . n A 1 74 C 74 74 74 C C A . n A 1 75 U 75 75 75 U U A . n A 1 76 G 76 76 76 G G A . n A 1 77 U 77 77 77 U U A . n A 1 78 G 78 78 78 G G A . n A 1 79 C 79 79 79 C C A . n A 1 80 G 80 80 80 G G A . n A 1 81 G 81 81 81 G G A . n A 1 82 U 82 82 82 U U A . n A 1 83 C 83 83 83 C C A . n A 1 84 A 84 84 84 A A A . n A 1 85 A 85 85 85 A A A . n A 1 86 A 86 86 86 A A A . n A 1 87 A 87 87 87 A A A . n A 1 88 U 88 88 88 U U A . n A 1 89 U 89 89 89 U U A . n A 1 90 C 90 90 90 C C A . n A 1 91 A 91 91 91 A A A . n A 1 92 U 92 92 92 U U A . n A 1 93 C 93 93 93 C C A . n A 1 94 C 94 94 94 C C A . n A 1 95 G 95 95 95 G G A . n A 1 96 C 96 96 96 C C A . n A 1 97 C 97 97 97 C C A . n A 1 98 G 98 98 98 G G A . n A 1 99 G 99 99 99 G G A . n A 1 100 A 100 100 100 A A A . n A 1 101 G 101 101 101 G G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PRF 1 201 1 PRF PRF A . C 3 HOH 1 301 2 HOH HOH A . C 3 HOH 2 302 4 HOH HOH A . C 3 HOH 3 303 5 HOH HOH A . C 3 HOH 4 304 6 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A C 36 ? P ? A C 36 P 2 1 Y 1 A C 36 ? OP1 ? A C 36 OP1 3 1 Y 1 A C 36 ? OP2 ? A C 36 OP2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 SOLVE phasing . ? 2 PHENIX refinement '(phenix.refine: 1.9_1692)' ? 3 XDS 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _cell.entry_id 4RZD _cell.length_a 84.083 _cell.length_b 84.083 _cell.length_c 278.365 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4RZD _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4RZD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.35 _exptl_crystal.density_percent_sol 71.73 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;85% Tacsimate pH 7.0, 0.010 M Mg(C2H3O2)2, 0.006 M Co(NH3)6Cl3, and 0.001 M spermine HCl, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2010-02-19 _diffrn_detector.details 'RH COATED FOCUSING MIRROR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1696 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.pdbx_wavelength 1.1696 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4RZD _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 46.400 _reflns.d_resolution_high 2.750 _reflns.number_obs 25223 _reflns.number_all ? _reflns.percent_possible_obs 94.2 _reflns.pdbx_Rmerge_I_obs 0.03400 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.8000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.600 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.75 _reflns_shell.d_res_low 2.85 _reflns_shell.percent_possible_all 79.3 _reflns_shell.Rmerge_I_obs 0.50000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.400 _reflns_shell.pdbx_redundancy 2.20 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4RZD _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 25223 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 38.294 _refine.ls_d_res_high 2.750 _refine.ls_percent_reflns_obs 88.15 _refine.ls_R_factor_obs 0.2138 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2121 _refine.ls_R_factor_R_free 0.2277 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.01 _refine.ls_number_reflns_R_free 2526 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 122.00 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SIRAS _refine.pdbx_isotropic_thermal_model 'isotropic with TLS' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.46 _refine.pdbx_overall_phase_error 29.69 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2116 _refine_hist.pdbx_number_atoms_ligand 13 _refine_hist.number_atoms_solvent 4 _refine_hist.number_atoms_total 2133 _refine_hist.d_res_high 2.750 _refine_hist.d_res_low 38.294 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.002 ? ? 2383 'X-RAY DIFFRACTION' ? f_angle_d 0.554 ? ? 3704 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 15.736 ? ? 1186 'X-RAY DIFFRACTION' ? f_chiral_restr 0.024 ? ? 494 'X-RAY DIFFRACTION' ? f_plane_restr 0.002 ? ? 100 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.7502 2.8031 875 0.4743 60.00 0.5861 . . 101 . . . . 'X-RAY DIFFRACTION' . 2.8031 2.8603 1025 0.4552 74.00 0.5079 . . 109 . . . . 'X-RAY DIFFRACTION' . 2.8603 2.9224 1223 0.4067 85.00 0.3585 . . 142 . . . . 'X-RAY DIFFRACTION' . 2.9224 2.9904 1288 0.3613 90.00 0.3736 . . 143 . . . . 'X-RAY DIFFRACTION' . 2.9904 3.0651 1200 0.3216 85.00 0.3218 . . 140 . . . . 'X-RAY DIFFRACTION' . 3.0651 3.1480 1367 0.3070 93.00 0.3137 . . 127 . . . . 'X-RAY DIFFRACTION' . 3.1480 3.2406 1372 0.2695 94.00 0.3346 . . 157 . . . . 'X-RAY DIFFRACTION' . 3.2406 3.3451 1301 0.2535 93.00 0.3034 . . 147 . . . . 'X-RAY DIFFRACTION' . 3.3451 3.4646 1351 0.2465 94.00 0.2624 . . 152 . . . . 'X-RAY DIFFRACTION' . 3.4646 3.6032 1302 0.2193 91.00 0.1761 . . 139 . . . . 'X-RAY DIFFRACTION' . 3.6032 3.7671 1213 0.1853 85.00 0.2176 . . 139 . . . . 'X-RAY DIFFRACTION' . 3.7671 3.9655 1374 0.1776 96.00 0.1946 . . 156 . . . . 'X-RAY DIFFRACTION' . 3.9655 4.2136 1362 0.1675 95.00 0.1951 . . 143 . . . . 'X-RAY DIFFRACTION' . 4.2136 4.5385 1313 0.1541 92.00 0.1696 . . 149 . . . . 'X-RAY DIFFRACTION' . 4.5385 4.9943 1238 0.1799 86.00 0.2510 . . 135 . . . . 'X-RAY DIFFRACTION' . 4.9943 5.7150 1353 0.1704 95.00 0.1762 . . 159 . . . . 'X-RAY DIFFRACTION' . 5.7150 7.1925 1277 0.1927 89.00 0.1824 . . 142 . . . . 'X-RAY DIFFRACTION' . 7.1925 38.2978 1263 0.1993 89.00 0.2153 . . 146 . . . . # _database_PDB_matrix.entry_id 4RZD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4RZD _struct.title 'Crystal Structure of a PreQ1 Riboswitch' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4RZD _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'Three-way Helical Junction, HL(OUT)-TYPE PSEUDOKNOT, Translational Regulation, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4RZD _struct_ref.pdbx_db_accession 4RZD _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4RZD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 101 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4RZD _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 101 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 101 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A A 2 P ? ? A GTP 1 A A 2 1_555 ? ? ? ? ? ? ? 1.611 ? ? hydrog1 hydrog ? ? A GTP 1 N1 ? ? ? 1_555 A C 23 N3 ? ? A GTP 1 A C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A GTP 1 N2 ? ? ? 1_555 A C 23 O2 ? ? A GTP 1 A C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A GTP 1 O6 ? ? ? 1_555 A C 23 N4 ? ? A GTP 1 A C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 2 N1 ? ? ? 1_555 A U 22 N3 ? ? A A 2 A U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 2 N6 ? ? ? 1_555 A U 22 O4 ? ? A A 2 A U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 21 N3 ? ? A G 3 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 21 O2 ? ? A G 3 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 21 N4 ? ? A G 3 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 20 N1 ? ? A C 4 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 20 O6 ? ? A C 4 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 20 N2 ? ? A C 4 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 A G 19 N1 ? ? A A 5 A G 19 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 A G 19 O6 ? ? A A 5 A G 19 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog14 hydrog ? ? A A 6 N1 ? ? ? 1_555 A A 18 N6 ? ? A A 6 A A 18 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog15 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 85 N7 ? ? A U 8 A A 85 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog16 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 85 N6 ? ? A U 8 A A 85 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog17 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 86 N7 ? ? A U 9 A A 86 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog18 hydrog ? ? A U 9 O4 ? ? ? 1_555 A A 86 N6 ? ? A U 9 A A 86 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog19 hydrog ? ? A A 10 N1 ? ? ? 1_555 A A 87 N6 ? ? A A 10 A A 87 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog20 hydrog ? ? A A 10 N6 ? ? ? 1_555 A A 87 N7 ? ? A A 10 A A 87 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog21 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 90 N3 ? ? A G 11 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 90 O2 ? ? A G 11 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 90 N4 ? ? A G 11 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 12 N1 ? ? ? 1_555 A U 89 O2 ? ? A G 12 A U 89 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog25 hydrog ? ? A G 12 O6 ? ? ? 1_555 A U 89 N3 ? ? A G 12 A U 89 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog26 hydrog ? ? A A 13 N1 ? ? ? 1_555 A U 88 N3 ? ? A A 13 A U 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A A 13 N6 ? ? ? 1_555 A U 88 O4 ? ? A A 13 A U 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 14 N3 ? ? ? 1_555 A A 87 N1 ? ? A U 14 A A 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 14 O4 ? ? ? 1_555 A A 87 N6 ? ? A U 14 A A 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 15 N3 ? ? ? 1_555 A A 86 N1 ? ? A U 15 A A 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 15 O4 ? ? ? 1_555 A A 86 N6 ? ? A U 15 A A 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 16 N3 ? ? ? 1_555 A A 85 N1 ? ? A U 16 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A U 16 O4 ? ? ? 1_555 A A 85 N6 ? ? A U 16 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 24 N3 ? ? ? 1_555 A G 49 N1 ? ? A C 24 A G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 24 N4 ? ? ? 1_555 A G 49 O6 ? ? A C 24 A G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 24 O2 ? ? ? 1_555 A G 49 N2 ? ? A C 24 A G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 25 N3 ? ? ? 1_555 A G 48 N1 ? ? A C 25 A G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 25 N4 ? ? ? 1_555 A G 48 O6 ? ? A C 25 A G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 25 O2 ? ? ? 1_555 A G 48 N2 ? ? A C 25 A G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 26 N3 ? ? ? 1_555 A G 47 N1 ? ? A C 26 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 26 N4 ? ? ? 1_555 A G 47 O6 ? ? A C 26 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 26 O2 ? ? ? 1_555 A G 47 N2 ? ? A C 26 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 27 N1 ? ? ? 1_555 A C 46 N3 ? ? A G 27 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 27 N2 ? ? ? 1_555 A C 46 O2 ? ? A G 27 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 27 O6 ? ? ? 1_555 A C 46 N4 ? ? A G 27 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 28 N1 ? ? ? 1_555 A C 45 N3 ? ? A G 28 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 28 N2 ? ? ? 1_555 A C 45 O2 ? ? A G 28 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 28 O6 ? ? ? 1_555 A C 45 N4 ? ? A G 28 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 29 N3 ? ? ? 1_555 A G 44 N1 ? ? A C 29 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 29 N4 ? ? ? 1_555 A G 44 O6 ? ? A C 29 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 29 O2 ? ? ? 1_555 A G 44 N2 ? ? A C 29 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 30 N1 ? ? ? 1_555 A U 43 O2 ? ? A G 30 A U 43 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog53 hydrog ? ? A G 30 O6 ? ? ? 1_555 A U 43 N3 ? ? A G 30 A U 43 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog54 hydrog ? ? A U 31 N3 ? ? ? 1_555 A A 42 N1 ? ? A U 31 A A 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A U 31 O4 ? ? ? 1_555 A A 42 N6 ? ? A U 31 A A 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 41 O2 ? ? A G 32 A C 41 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog57 hydrog ? ? A U 33 O4 ? ? ? 1_555 A C 40 N4 ? ? A U 33 A C 40 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog58 hydrog ? ? A A 53 N6 ? ? ? 1_555 A C 83 O2 ? ? A A 53 A C 83 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog59 hydrog ? ? A A 54 N1 ? ? ? 1_555 A U 82 N3 ? ? A A 54 A U 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A A 54 N6 ? ? ? 1_555 A U 82 O4 ? ? A A 54 A U 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A C 55 N3 ? ? ? 1_555 A G 81 N1 ? ? A C 55 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 55 N4 ? ? ? 1_555 A G 81 O6 ? ? A C 55 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 55 O2 ? ? ? 1_555 A G 81 N2 ? ? A C 55 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 56 N3 ? ? ? 1_555 A G 80 N1 ? ? A C 56 A G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 56 N4 ? ? ? 1_555 A G 80 O6 ? ? A C 56 A G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 56 O2 ? ? ? 1_555 A G 80 N2 ? ? A C 56 A G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 57 N3 ? ? ? 1_555 A G 78 N1 ? ? A C 57 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A C 57 N4 ? ? ? 1_555 A G 78 O6 ? ? A C 57 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A C 57 O2 ? ? ? 1_555 A G 78 N2 ? ? A C 57 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A A 58 N1 ? ? ? 1_555 A U 77 N3 ? ? A A 58 A U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A A 58 N6 ? ? ? 1_555 A U 77 O4 ? ? A A 58 A U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A U 59 N3 ? ? ? 1_555 A G 76 O6 ? ? A U 59 A G 76 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog73 hydrog ? ? A U 59 O2 ? ? ? 1_555 A G 76 N1 ? ? A U 59 A G 76 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog74 hydrog ? ? A A 60 N1 ? ? ? 1_555 A U 75 N3 ? ? A A 60 A U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A A 60 N6 ? ? ? 1_555 A U 75 O4 ? ? A A 60 A U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 61 N1 ? ? ? 1_555 A C 74 N3 ? ? A G 61 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A G 61 N2 ? ? ? 1_555 A C 74 O2 ? ? A G 61 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A G 61 O6 ? ? ? 1_555 A C 74 N4 ? ? A G 61 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A G 62 N1 ? ? ? 1_555 A C 73 N3 ? ? A G 62 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 62 N2 ? ? ? 1_555 A C 73 O2 ? ? A G 62 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A G 62 O6 ? ? ? 1_555 A C 73 N4 ? ? A G 62 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A G 63 N1 ? ? ? 1_555 A C 72 N3 ? ? A G 63 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A G 63 N2 ? ? ? 1_555 A C 72 O2 ? ? A G 63 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A G 63 O6 ? ? ? 1_555 A C 72 N4 ? ? A G 63 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id PRF _struct_site.pdbx_auth_seq_id 201 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR RESIDUE PRF A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 C A 7 ? C A 7 . ? 1_555 ? 2 AC1 7 U A 8 ? U A 8 . ? 1_555 ? 3 AC1 7 U A 17 ? U A 17 . ? 1_555 ? 4 AC1 7 A A 18 ? A A 18 . ? 1_555 ? 5 AC1 7 A A 84 ? A A 84 . ? 1_555 ? 6 AC1 7 A A 85 ? A A 85 . ? 1_555 ? 7 AC1 7 HOH C . ? HOH A 304 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 "HO2'" _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 A _pdbx_validate_close_contact.auth_seq_id_1 38 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 "O4'" _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 A _pdbx_validate_close_contact.auth_seq_id_2 39 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.51 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C3'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 GTP _pdbx_validate_rmsd_angle.auth_seq_id_1 1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "O3'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 GTP _pdbx_validate_rmsd_angle.auth_seq_id_2 1 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 P _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 A _pdbx_validate_rmsd_angle.auth_seq_id_3 2 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 108.06 _pdbx_validate_rmsd_angle.angle_target_value 119.70 _pdbx_validate_rmsd_angle.angle_deviation -11.64 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.20 _pdbx_validate_rmsd_angle.linker_flag Y # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id GTP _pdbx_struct_mod_residue.label_seq_id 1 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id GTP _pdbx_struct_mod_residue.auth_seq_id 1 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id G _pdbx_struct_mod_residue.details "GUANOSINE-5'-TRIPHOSPHATE" # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 37.1079 39.2845 123.2960 1.9962 1.2440 0.4875 0.2537 0.2441 0.1415 9.8585 5.1039 1.6014 5.8749 3.6358 1.4699 0.0726 -0.2896 1.7375 0.3699 0.6023 1.8278 -0.3242 -1.7053 -0.6506 'X-RAY DIFFRACTION' 2 ? refined 39.3866 28.9558 107.6021 1.3629 0.8636 0.0639 0.2264 -0.0573 0.0483 5.0869 4.0699 3.2352 -0.7803 -2.2149 -1.3178 -0.0137 -0.7008 -1.4981 0.0148 0.5575 -1.1467 -0.9794 0.6054 0.4974 'X-RAY DIFFRACTION' 3 ? refined 41.5035 36.6475 99.7705 1.3244 1.0738 0.4122 0.0761 -0.0834 0.0721 4.0429 4.2963 5.8469 0.1615 -4.7540 -0.0654 1.1965 -0.4682 0.5163 0.1025 -0.2009 0.1079 0.9554 0.3938 -1.0838 'X-RAY DIFFRACTION' 4 ? refined 33.5230 33.3290 113.7477 0.9908 0.8835 0.3905 0.1191 0.0378 -0.0044 1.5848 9.6044 7.8719 -0.0694 2.1429 -2.6027 -0.1484 -0.2372 -0.0725 -0.9976 0.4102 0.4395 0.5882 -0.1180 -0.3667 'X-RAY DIFFRACTION' 5 ? refined 38.6170 31.0438 127.8940 1.2859 0.9334 0.4813 0.0648 0.1518 -0.1430 7.2643 5.1327 4.4109 -5.2236 -4.5057 4.6968 0.8581 0.2204 0.9062 -0.4780 0.0401 -0.5287 -0.7227 -0.7228 -0.8498 'X-RAY DIFFRACTION' 6 ? refined 27.0777 37.0813 138.2514 1.6741 1.6510 0.7768 0.1749 0.2523 -0.0452 2.1182 6.3450 2.9436 -3.5345 1.7214 -3.7675 -0.4864 -2.7558 0.1866 0.2431 2.2510 0.2475 0.5130 0.0335 -1.8183 'X-RAY DIFFRACTION' 7 ? refined 27.8178 25.0148 148.1332 1.8711 2.9373 1.2040 0.0528 -0.0679 0.5015 9.1976 2.0018 9.2889 -7.1088 9.1756 -6.2372 2.4933 -0.1372 -0.9713 0.3683 1.6748 2.3521 1.0587 0.7088 -3.3768 'X-RAY DIFFRACTION' 8 ? refined 29.5826 30.8837 155.9265 2.8272 2.1839 1.6393 0.2254 0.3860 -0.0690 2.2044 3.6950 2.5652 2.6377 -1.6162 -2.7496 2.2184 1.2947 0.2225 0.8013 -1.2439 2.5724 -1.6212 -0.3939 -0.7622 'X-RAY DIFFRACTION' 9 ? refined 33.9241 26.5048 142.0879 1.6108 2.0861 0.7456 0.2018 0.0482 -0.1370 1.9814 4.9546 5.4303 4.7290 6.2753 4.7864 -1.7542 -1.1255 -0.4880 -2.1836 -0.4763 1.0371 -0.6017 -2.7687 2.3623 'X-RAY DIFFRACTION' 10 ? refined 24.3302 32.7553 131.2186 1.5370 1.4963 0.7123 0.0489 0.0675 0.2270 6.2434 6.0806 5.2782 -5.5453 0.9434 0.0150 0.5131 1.3123 -0.6868 -0.2367 0.9430 1.0839 -0.6461 1.6580 -1.4248 'X-RAY DIFFRACTION' 11 ? refined 24.3276 38.9796 112.2155 1.2381 1.3541 0.8944 0.4415 0.2089 0.3620 0.9973 4.3662 6.1497 2.0279 -2.0995 -5.0353 -0.1470 -1.6646 -1.0778 1.3443 -0.6108 1.3185 -1.1279 0.2939 0.6257 'X-RAY DIFFRACTION' 12 ? refined 9.1253 48.2741 107.4996 0.9472 0.8347 0.5484 0.1904 -0.1596 -0.0736 1.2654 8.8151 3.7343 1.2285 -2.1713 0.1457 0.1623 0.4149 -0.1375 1.1034 -0.3908 0.6887 -0.3276 0.1248 0.2017 'X-RAY DIFFRACTION' 13 ? refined 1.4455 64.5836 102.4823 1.2849 1.1061 0.6832 0.3358 -0.0765 0.0228 6.0228 1.3749 1.5980 2.5864 -1.4929 -0.4154 -1.1104 -1.1235 1.0721 -0.7115 0.5309 0.6391 -0.2148 -0.1016 0.5561 'X-RAY DIFFRACTION' 14 ? refined 7.0433 53.7053 100.1202 1.0105 0.9692 0.5149 0.1139 -0.0469 0.0937 8.6938 4.6067 3.0197 0.5115 5.1294 0.1272 0.0757 0.8823 -0.2570 0.1171 0.2389 0.4888 0.3098 0.8155 -0.1678 'X-RAY DIFFRACTION' 15 ? refined 14.3729 44.4360 115.4991 1.1648 0.8663 0.5527 0.1982 0.0718 -0.0164 3.1535 5.9172 5.0126 -1.0258 3.5285 0.9861 0.3170 -0.2410 -1.0694 0.2542 0.7241 0.6812 0.5599 -0.2306 -0.7039 'X-RAY DIFFRACTION' 16 ? refined 13.1960 33.3122 109.1728 1.1007 0.8014 1.0174 0.0804 0.0747 0.0513 8.1293 6.3005 1.8113 -2.0352 -1.1577 -1.2392 0.4515 -0.4918 -0.8839 1.0835 -0.8422 -0.9557 -0.5131 0.0596 0.5391 'X-RAY DIFFRACTION' 17 ? refined 30.0723 36.8036 103.6932 0.9855 0.8407 0.5048 0.2566 -0.0428 0.1105 8.6653 8.1155 8.4181 5.5562 -4.7607 -0.7227 1.0173 -0.4894 -0.2187 0.6811 -0.6714 0.2832 -0.0988 0.7573 -0.3914 'X-RAY DIFFRACTION' 18 ? refined 43.6209 43.2932 93.3331 1.3702 1.0277 0.5111 0.0294 -0.0343 0.0395 3.1478 4.3597 6.6517 3.5928 -0.1060 1.0474 0.5326 0.1170 0.3397 0.6029 0.4876 -0.2337 -0.2880 -0.7042 -1.0625 'X-RAY DIFFRACTION' 19 ? refined 53.3199 28.4798 93.3761 1.2800 1.5350 0.8069 0.1198 -0.1598 0.3006 3.6295 0.2939 3.3883 -0.7236 -3.5117 0.5054 -1.3769 -1.3598 -1.0728 0.8467 1.1784 -0.4169 -0.5665 1.6525 0.3677 'X-RAY DIFFRACTION' 20 ? refined 69.0956 26.4555 91.0341 1.4695 1.8484 1.8102 -0.0268 -0.2148 0.3387 3.1415 4.1572 3.3450 -3.0503 2.8130 -1.8470 -1.0576 -0.5783 -0.4294 0.4516 0.1675 -0.8167 -1.2660 1.4929 1.2363 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(chain A and resid 1:4)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(chain A and resid 5:9)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '(chain A and resid 10:14)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? '(chain A and resid 15:20)' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? '(chain A and resid 21:24)' 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? '(chain A and resid 25:28)' 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? '(chain A and resid 29:32)' 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? '(chain A and resid 33:41)' 'X-RAY DIFFRACTION' 9 9 ? ? ? ? ? ? ? ? ? '(chain A and resid 42:45)' 'X-RAY DIFFRACTION' 10 10 ? ? ? ? ? ? ? ? ? '(chain A and resid 46:49)' 'X-RAY DIFFRACTION' 11 11 ? ? ? ? ? ? ? ? ? '(chain A and resid 50:54)' 'X-RAY DIFFRACTION' 12 12 ? ? ? ? ? ? ? ? ? '(chain A and resid 55:62)' 'X-RAY DIFFRACTION' 13 13 ? ? ? ? ? ? ? ? ? '(chain A and resid 63:68)' 'X-RAY DIFFRACTION' 14 14 ? ? ? ? ? ? ? ? ? '(chain A and resid 69:75)' 'X-RAY DIFFRACTION' 15 15 ? ? ? ? ? ? ? ? ? '(chain A and resid 76:79)' 'X-RAY DIFFRACTION' 16 16 ? ? ? ? ? ? ? ? ? '(chain A and resid 80:83)' 'X-RAY DIFFRACTION' 17 17 ? ? ? ? ? ? ? ? ? '(chain A and resid 84:88)' 'X-RAY DIFFRACTION' 18 18 ? ? ? ? ? ? ? ? ? '(chain A and resid 89:92)' 'X-RAY DIFFRACTION' 19 19 ? ? ? ? ? ? ? ? ? '(chain A and resid 93:96)' 'X-RAY DIFFRACTION' 20 20 ? ? ? ? ? ? ? ? ? '(chain A and resid 97:101)' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A C 34 ? A C 34 2 1 Y 1 A U 35 ? A U 35 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 GTP PG P N N 111 GTP O1G O N N 112 GTP O2G O N N 113 GTP O3G O N N 114 GTP O3B O N N 115 GTP PB P N N 116 GTP O1B O N N 117 GTP O2B O N N 118 GTP O3A O N N 119 GTP PA P N N 120 GTP O1A O N N 121 GTP O2A O N N 122 GTP "O5'" O N N 123 GTP "C5'" C N N 124 GTP "C4'" C N R 125 GTP "O4'" O N N 126 GTP "C3'" C N S 127 GTP "O3'" O N N 128 GTP "C2'" C N R 129 GTP "O2'" O N N 130 GTP "C1'" C N R 131 GTP N9 N Y N 132 GTP C8 C Y N 133 GTP N7 N Y N 134 GTP C5 C Y N 135 GTP C6 C N N 136 GTP O6 O N N 137 GTP N1 N N N 138 GTP C2 C N N 139 GTP N2 N N N 140 GTP N3 N N N 141 GTP C4 C Y N 142 GTP HOG2 H N N 143 GTP HOG3 H N N 144 GTP HOB2 H N N 145 GTP HOA2 H N N 146 GTP "H5'" H N N 147 GTP "H5''" H N N 148 GTP "H4'" H N N 149 GTP "H3'" H N N 150 GTP "HO3'" H N N 151 GTP "H2'" H N N 152 GTP "HO2'" H N N 153 GTP "H1'" H N N 154 GTP H8 H N N 155 GTP HN1 H N N 156 GTP HN21 H N N 157 GTP HN22 H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 PRF N1 N N N 162 PRF C2 C N N 163 PRF N3 N N N 164 PRF C4 C Y N 165 PRF C5 C Y N 166 PRF C6 C N N 167 PRF O6 O N N 168 PRF C7 C Y N 169 PRF C10 C N N 170 PRF N11 N N N 171 PRF C8 C Y N 172 PRF N9 N Y N 173 PRF N2 N N N 174 PRF H91 H N N 175 PRF H101 H N N 176 PRF H102 H N N 177 PRF H111 H N N 178 PRF H112 H N N 179 PRF H81 H N N 180 PRF HN91 H N N 181 PRF HN21 H N N 182 PRF HN22 H N N 183 U OP3 O N N 184 U P P N N 185 U OP1 O N N 186 U OP2 O N N 187 U "O5'" O N N 188 U "C5'" C N N 189 U "C4'" C N R 190 U "O4'" O N N 191 U "C3'" C N S 192 U "O3'" O N N 193 U "C2'" C N R 194 U "O2'" O N N 195 U "C1'" C N R 196 U N1 N N N 197 U C2 C N N 198 U O2 O N N 199 U N3 N N N 200 U C4 C N N 201 U O4 O N N 202 U C5 C N N 203 U C6 C N N 204 U HOP3 H N N 205 U HOP2 H N N 206 U "H5'" H N N 207 U "H5''" H N N 208 U "H4'" H N N 209 U "H3'" H N N 210 U "HO3'" H N N 211 U "H2'" H N N 212 U "HO2'" H N N 213 U "H1'" H N N 214 U H3 H N N 215 U H5 H N N 216 U H6 H N N 217 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GTP PG O1G doub N N 116 GTP PG O2G sing N N 117 GTP PG O3G sing N N 118 GTP PG O3B sing N N 119 GTP O2G HOG2 sing N N 120 GTP O3G HOG3 sing N N 121 GTP O3B PB sing N N 122 GTP PB O1B doub N N 123 GTP PB O2B sing N N 124 GTP PB O3A sing N N 125 GTP O2B HOB2 sing N N 126 GTP O3A PA sing N N 127 GTP PA O1A doub N N 128 GTP PA O2A sing N N 129 GTP PA "O5'" sing N N 130 GTP O2A HOA2 sing N N 131 GTP "O5'" "C5'" sing N N 132 GTP "C5'" "C4'" sing N N 133 GTP "C5'" "H5'" sing N N 134 GTP "C5'" "H5''" sing N N 135 GTP "C4'" "O4'" sing N N 136 GTP "C4'" "C3'" sing N N 137 GTP "C4'" "H4'" sing N N 138 GTP "O4'" "C1'" sing N N 139 GTP "C3'" "O3'" sing N N 140 GTP "C3'" "C2'" sing N N 141 GTP "C3'" "H3'" sing N N 142 GTP "O3'" "HO3'" sing N N 143 GTP "C2'" "O2'" sing N N 144 GTP "C2'" "C1'" sing N N 145 GTP "C2'" "H2'" sing N N 146 GTP "O2'" "HO2'" sing N N 147 GTP "C1'" N9 sing N N 148 GTP "C1'" "H1'" sing N N 149 GTP N9 C8 sing Y N 150 GTP N9 C4 sing Y N 151 GTP C8 N7 doub Y N 152 GTP C8 H8 sing N N 153 GTP N7 C5 sing Y N 154 GTP C5 C6 sing N N 155 GTP C5 C4 doub Y N 156 GTP C6 O6 doub N N 157 GTP C6 N1 sing N N 158 GTP N1 C2 sing N N 159 GTP N1 HN1 sing N N 160 GTP C2 N2 sing N N 161 GTP C2 N3 doub N N 162 GTP N2 HN21 sing N N 163 GTP N2 HN22 sing N N 164 GTP N3 C4 sing N N 165 HOH O H1 sing N N 166 HOH O H2 sing N N 167 PRF N1 C2 sing N N 168 PRF N1 C6 sing N N 169 PRF N1 H91 sing N N 170 PRF C2 N3 doub N N 171 PRF C2 N2 sing N N 172 PRF N3 C4 sing N N 173 PRF C4 C5 doub Y N 174 PRF C4 N9 sing Y N 175 PRF C5 C6 sing N N 176 PRF C5 C7 sing Y N 177 PRF C6 O6 doub N N 178 PRF C7 C10 sing N N 179 PRF C7 C8 doub Y N 180 PRF C10 N11 sing N N 181 PRF C10 H101 sing N N 182 PRF C10 H102 sing N N 183 PRF N11 H111 sing N N 184 PRF N11 H112 sing N N 185 PRF C8 N9 sing Y N 186 PRF C8 H81 sing N N 187 PRF N9 HN91 sing N N 188 PRF N2 HN21 sing N N 189 PRF N2 HN22 sing N N 190 U OP3 P sing N N 191 U OP3 HOP3 sing N N 192 U P OP1 doub N N 193 U P OP2 sing N N 194 U P "O5'" sing N N 195 U OP2 HOP2 sing N N 196 U "O5'" "C5'" sing N N 197 U "C5'" "C4'" sing N N 198 U "C5'" "H5'" sing N N 199 U "C5'" "H5''" sing N N 200 U "C4'" "O4'" sing N N 201 U "C4'" "C3'" sing N N 202 U "C4'" "H4'" sing N N 203 U "O4'" "C1'" sing N N 204 U "C3'" "O3'" sing N N 205 U "C3'" "C2'" sing N N 206 U "C3'" "H3'" sing N N 207 U "O3'" "HO3'" sing N N 208 U "C2'" "O2'" sing N N 209 U "C2'" "C1'" sing N N 210 U "C2'" "H2'" sing N N 211 U "O2'" "HO2'" sing N N 212 U "C1'" N1 sing N N 213 U "C1'" "H1'" sing N N 214 U N1 C2 sing N N 215 U N1 C6 sing N N 216 U C2 O2 doub N N 217 U C2 N3 sing N N 218 U N3 C4 sing N N 219 U N3 H3 sing N N 220 U C4 O4 doub N N 221 U C4 C5 sing N N 222 U C5 C6 doub N N 223 U C5 H5 sing N N 224 U C6 H6 sing N N 225 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4RZD 'double helix' 4RZD 'a-form double helix' 4RZD 'hairpin loop' 4RZD 'bulge loop' 4RZD 'mismatched base pair' 4RZD 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 11 1_555 A C 90 1_555 -0.571 -0.362 0.232 2.974 -9.882 -0.146 1 A_G11:C90_A A 11 ? A 90 ? 19 1 1 A G 12 1_555 A U 89 1_555 -1.985 -0.542 0.067 -0.073 -10.476 1.147 2 A_G12:U89_A A 12 ? A 89 ? 28 1 1 A A 13 1_555 A U 88 1_555 -0.056 -0.204 0.097 -3.277 -11.609 2.076 3 A_A13:U88_A A 13 ? A 88 ? 20 1 1 A U 14 1_555 A A 87 1_555 0.011 -0.197 -0.060 4.246 -10.152 1.053 4 A_U14:A87_A A 14 ? A 87 ? 20 1 1 A U 15 1_555 A A 86 1_555 0.375 0.064 0.170 4.983 1.437 12.251 5 A_U15:A86_A A 15 ? A 86 ? 20 1 1 A U 16 1_555 A A 85 1_555 -0.016 -0.118 -0.270 6.811 3.680 6.955 6 A_U16:A85_A A 16 ? A 85 ? 20 1 1 A A 6 1_555 A A 18 1_555 2.295 2.400 -0.096 -17.467 0.767 -129.350 7 A_A6:A18_A A 6 ? A 18 ? ? ? 1 A A 5 1_555 A G 19 1_555 -0.066 1.344 0.051 -10.123 -5.168 -24.612 8 A_A5:G19_A A 5 ? A 19 ? 8 1 1 A C 4 1_555 A G 20 1_555 -0.474 -0.148 0.152 -3.472 -8.756 -5.410 9 A_C4:G20_A A 4 ? A 20 ? 19 1 1 A G 3 1_555 A C 21 1_555 -0.264 -0.204 0.274 -3.745 -15.039 0.618 10 A_G3:C21_A A 3 ? A 21 ? 19 1 1 A A 2 1_555 A U 22 1_555 0.072 -0.164 0.044 -2.977 -5.767 4.008 11 A_A2:U22_A A 2 ? A 22 ? 20 1 1 A GTP 1 1_555 A C 23 1_555 -0.192 -0.213 -0.144 -8.688 -3.580 -1.864 12 A_GTP1:C23_A A 1 ? A 23 ? 19 1 1 A C 24 1_555 A G 49 1_555 0.319 0.211 0.323 3.516 -9.480 5.299 13 A_C24:G49_A A 24 ? A 49 ? 19 1 1 A C 25 1_555 A G 48 1_555 0.314 -0.493 0.226 13.606 -12.585 -4.626 14 A_C25:G48_A A 25 ? A 48 ? 19 1 1 A C 26 1_555 A G 47 1_555 0.193 -0.370 0.052 5.016 -14.061 -1.186 15 A_C26:G47_A A 26 ? A 47 ? 19 1 1 A G 27 1_555 A C 46 1_555 -0.189 -0.335 0.126 -0.941 -10.277 -3.517 16 A_G27:C46_A A 27 ? A 46 ? 19 1 1 A G 28 1_555 A C 45 1_555 -1.023 -0.332 0.088 -0.068 -17.668 4.446 17 A_G28:C45_A A 28 ? A 45 ? 19 1 1 A C 29 1_555 A G 44 1_555 0.220 -0.235 -0.259 8.196 -23.299 -1.060 18 A_C29:G44_A A 29 ? A 44 ? 19 1 1 A G 30 1_555 A U 43 1_555 -1.548 -0.554 0.466 1.983 -12.701 -3.580 19 A_G30:U43_A A 30 ? A 43 ? 28 1 1 A U 31 1_555 A A 42 1_555 0.234 -0.462 0.464 -7.663 -23.580 -9.950 20 A_U31:A42_A A 31 ? A 42 ? 20 1 1 A G 32 1_555 A C 41 1_555 -1.830 0.713 0.730 2.519 -23.023 28.658 21 A_G32:C41_A A 32 ? A 41 ? ? 1 1 A U 33 1_555 A C 40 1_555 -2.261 0.293 -0.501 10.433 -2.044 -51.879 22 A_U33:C40_A A 33 ? A 40 ? ? ? 1 A A 53 1_555 A C 83 1_555 -5.245 -1.140 0.219 9.204 -0.006 11.306 23 A_A53:C83_A A 53 ? A 83 ? ? ? 1 A A 54 1_555 A U 82 1_555 -0.960 -0.195 0.002 9.248 -2.294 4.703 24 A_A54:U82_A A 54 ? A 82 ? 20 1 1 A C 55 1_555 A G 81 1_555 0.156 -0.253 -0.744 17.851 -11.979 0.984 25 A_C55:G81_A A 55 ? A 81 ? 19 1 1 A C 56 1_555 A G 80 1_555 0.529 -0.236 -0.386 2.047 -6.986 2.487 26 A_C56:G80_A A 56 ? A 80 ? 19 1 1 A C 57 1_555 A G 78 1_555 0.229 -0.068 -0.062 0.089 -6.263 4.926 27 A_C57:G78_A A 57 ? A 78 ? 19 1 1 A A 58 1_555 A U 77 1_555 -0.051 -0.224 0.204 1.528 -14.457 1.996 28 A_A58:U77_A A 58 ? A 77 ? 20 1 1 A U 59 1_555 A G 76 1_555 1.994 -0.528 0.179 -3.581 -15.278 5.222 29 A_U59:G76_A A 59 ? A 76 ? 28 1 1 A A 60 1_555 A U 75 1_555 -0.294 -0.299 -0.201 -0.618 -4.966 5.816 30 A_A60:U75_A A 60 ? A 75 ? 20 1 1 A G 61 1_555 A C 74 1_555 -0.273 -0.026 -0.304 -2.712 -8.542 2.228 31 A_G61:C74_A A 61 ? A 74 ? 19 1 1 A G 62 1_555 A C 73 1_555 -0.255 0.001 -0.527 -15.863 -14.155 3.696 32 A_G62:C73_A A 62 ? A 73 ? 19 1 1 A G 63 1_555 A C 72 1_555 0.417 0.006 -0.359 -15.210 -10.608 0.718 33 A_G63:C72_A A 63 ? A 72 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 11 1_555 A C 90 1_555 A G 12 1_555 A U 89 1_555 -0.183 -2.028 3.048 -3.801 6.543 29.583 -4.985 -0.311 2.554 12.556 7.294 30.514 1 AA_G11G12:U89C90_AA A 11 ? A 90 ? A 12 ? A 89 ? 1 A G 12 1_555 A U 89 1_555 A A 13 1_555 A U 88 1_555 -0.062 -1.318 3.271 -2.443 7.050 39.594 -2.686 -0.177 3.000 10.296 3.568 40.263 2 AA_G12A13:U88U89_AA A 12 ? A 89 ? A 13 ? A 88 ? 1 A A 13 1_555 A U 88 1_555 A U 14 1_555 A A 87 1_555 -0.200 -1.388 2.962 0.647 4.599 32.868 -3.107 0.445 2.744 8.077 -1.137 33.185 3 AA_A13U14:A87U88_AA A 13 ? A 88 ? A 14 ? A 87 ? 1 A U 14 1_555 A A 87 1_555 A U 15 1_555 A A 86 1_555 1.291 -1.849 3.227 -2.351 2.540 31.019 -3.895 -2.825 2.967 4.731 4.379 31.207 4 AA_U14U15:A86A87_AA A 14 ? A 87 ? A 15 ? A 86 ? 1 A U 15 1_555 A A 86 1_555 A U 16 1_555 A A 85 1_555 -0.603 -2.347 3.054 1.792 2.667 28.029 -5.371 1.611 2.780 5.484 -3.684 28.209 5 AA_U15U16:A85A86_AA A 15 ? A 86 ? A 16 ? A 85 ? 1 A U 16 1_555 A A 85 1_555 A A 6 1_555 A A 18 1_555 1.554 7.098 -0.599 149.913 58.262 -79.793 -3.235 -0.099 -3.453 -30.363 78.128 -165.326 6 AA_U16A6:A18A85_AA A 16 ? A 85 ? A 6 ? A 18 ? 1 A A 6 1_555 A A 18 1_555 A A 5 1_555 A G 19 1_555 0.048 2.162 -3.027 -7.570 -2.708 -87.919 -1.606 0.182 -2.963 1.947 -5.443 -88.211 7 AA_A6A5:G19A18_AA A 6 ? A 18 ? A 5 ? A 19 ? 1 A A 5 1_555 A G 19 1_555 A C 4 1_555 A G 20 1_555 0.838 2.116 -3.337 -2.164 -7.458 -32.085 -4.919 1.821 -2.729 13.252 -3.845 -32.988 8 AA_A5C4:G20G19_AA A 5 ? A 19 ? A 4 ? A 20 ? 1 A C 4 1_555 A G 20 1_555 A G 3 1_555 A C 21 1_555 0.873 1.805 -3.145 -0.023 -4.910 -35.093 -3.634 1.438 -2.873 8.094 -0.038 -35.424 9 AA_C4G3:C21G20_AA A 4 ? A 20 ? A 3 ? A 21 ? 1 A G 3 1_555 A C 21 1_555 A A 2 1_555 A U 22 1_555 -0.181 2.014 -3.202 1.449 -5.102 -27.685 -5.236 -0.684 -2.780 10.540 2.993 -28.179 10 AA_G3A2:U22C21_AA A 3 ? A 21 ? A 2 ? A 22 ? 1 A A 2 1_555 A U 22 1_555 A GTP 1 1_555 A C 23 1_555 0.795 2.091 -3.055 2.577 -1.979 -29.845 -4.413 1.046 -2.970 3.828 4.986 -30.018 11 AA_A2GTP1:C23U22_AA A 2 ? A 22 ? A 1 ? A 23 ? 1 A GTP 1 1_555 A C 23 1_555 A C 24 1_555 A G 49 1_555 1.189 -3.732 -0.911 163.398 -51.602 115.053 -1.888 -0.660 0.441 -26.004 -82.342 175.360 12 AA_GTP1C24:G49C23_AA A 1 ? A 23 ? A 24 ? A 49 ? 1 A C 24 1_555 A G 49 1_555 A C 25 1_555 A G 48 1_555 -0.760 -1.782 2.897 -4.673 2.465 32.848 -3.477 0.640 2.838 4.324 8.197 33.258 13 AA_C24C25:G48G49_AA A 24 ? A 49 ? A 25 ? A 48 ? 1 A C 25 1_555 A G 48 1_555 A C 26 1_555 A G 47 1_555 -0.556 -2.194 3.330 -1.307 8.619 29.877 -5.629 0.804 2.631 16.287 2.470 31.095 14 AA_C25C26:G47G48_AA A 25 ? A 48 ? A 26 ? A 47 ? 1 A C 26 1_555 A G 47 1_555 A G 27 1_555 A C 46 1_555 -0.528 -1.587 3.309 -1.323 9.536 29.163 -4.766 0.753 2.689 18.319 2.541 30.678 15 AA_C26G27:C46G47_AA A 26 ? A 47 ? A 27 ? A 46 ? 1 A G 27 1_555 A C 46 1_555 A G 28 1_555 A C 45 1_555 1.184 -2.196 3.228 -1.508 5.935 25.251 -6.360 -3.009 2.578 13.328 3.387 25.971 16 AA_G27G28:C45C46_AA A 27 ? A 46 ? A 28 ? A 45 ? 1 A G 28 1_555 A C 45 1_555 A C 29 1_555 A G 44 1_555 -0.391 -1.298 3.075 2.866 -2.283 41.536 -1.597 0.835 3.107 -3.212 -4.032 41.690 17 AA_G28C29:G44C45_AA A 28 ? A 45 ? A 29 ? A 44 ? 1 A C 29 1_555 A G 44 1_555 A G 30 1_555 A U 43 1_555 -0.189 -2.570 3.167 -6.222 17.989 21.221 -8.125 -0.615 0.809 39.994 13.833 28.434 18 AA_C29G30:U43G44_AA A 29 ? A 44 ? A 30 ? A 43 ? 1 A G 30 1_555 A U 43 1_555 A U 31 1_555 A A 42 1_555 -0.516 -1.255 3.434 -1.982 5.032 46.596 -2.007 0.478 3.307 6.336 2.496 46.892 19 AA_G30U31:A42U43_AA A 30 ? A 43 ? A 31 ? A 42 ? 1 A U 31 1_555 A A 42 1_555 A G 32 1_555 A C 41 1_555 1.718 -1.561 2.820 5.018 8.859 21.856 -6.098 -2.781 2.349 21.901 -12.405 24.085 20 AA_U31G32:C41A42_AA A 31 ? A 42 ? A 32 ? A 41 ? 1 A G 32 1_555 A C 41 1_555 A U 33 1_555 A C 40 1_555 -4.595 -1.101 3.343 -0.185 21.168 29.636 -4.525 7.355 2.141 36.152 0.316 36.281 21 AA_G32U33:C40C41_AA A 32 ? A 41 ? A 33 ? A 40 ? 1 A A 53 1_555 A C 83 1_555 A A 54 1_555 A U 82 1_555 -0.296 -1.151 3.297 -4.734 10.174 44.019 -2.374 -0.026 2.988 13.318 6.197 45.358 22 AA_A53A54:U82C83_AA A 53 ? A 83 ? A 54 ? A 82 ? 1 A A 54 1_555 A U 82 1_555 A C 55 1_555 A G 81 1_555 -0.416 -1.354 3.079 3.731 3.628 34.987 -2.719 1.188 2.870 5.994 -6.163 35.360 23 AA_A54C55:G81U82_AA A 54 ? A 82 ? A 55 ? A 81 ? 1 A C 55 1_555 A G 81 1_555 A C 56 1_555 A G 80 1_555 0.370 -1.783 3.592 0.339 13.070 36.487 -4.316 -0.517 2.816 20.099 -0.522 38.684 24 AA_C55C56:G80G81_AA A 55 ? A 81 ? A 56 ? A 80 ? 1 A C 56 1_555 A G 80 1_555 A C 57 1_555 A G 78 1_555 1.101 -1.467 3.158 1.215 6.661 36.255 -3.161 -1.587 2.887 10.591 -1.931 36.861 25 AA_C56C57:G78G80_AA A 56 ? A 80 ? A 57 ? A 78 ? 1 A C 57 1_555 A G 78 1_555 A A 58 1_555 A U 77 1_555 0.087 -1.727 3.017 -0.662 12.506 27.388 -5.411 -0.278 2.047 24.832 1.315 30.066 26 AA_C57A58:U77G78_AA A 57 ? A 78 ? A 58 ? A 77 ? 1 A A 58 1_555 A U 77 1_555 A U 59 1_555 A G 76 1_555 0.133 -1.383 3.383 1.678 8.198 39.243 -2.949 -0.003 3.048 12.040 -2.464 40.091 27 AA_A58U59:G76U77_AA A 58 ? A 77 ? A 59 ? A 76 ? 1 A U 59 1_555 A G 76 1_555 A A 60 1_555 A U 75 1_555 -0.113 -1.709 3.002 2.463 9.387 24.993 -5.693 0.769 2.206 20.720 -5.436 26.783 28 AA_U59A60:U75G76_AA A 59 ? A 76 ? A 60 ? A 75 ? 1 A A 60 1_555 A U 75 1_555 A G 61 1_555 A C 74 1_555 0.048 -1.635 3.238 0.016 9.443 27.871 -5.067 -0.091 2.558 18.930 -0.031 29.398 29 AA_A60G61:C74U75_AA A 60 ? A 75 ? A 61 ? A 74 ? 1 A G 61 1_555 A C 74 1_555 A G 62 1_555 A C 73 1_555 0.150 -1.783 3.559 0.112 9.770 34.556 -4.318 -0.227 2.963 16.054 -0.184 35.870 30 AA_G61G62:C73C74_AA A 61 ? A 74 ? A 62 ? A 73 ? 1 A G 62 1_555 A C 73 1_555 A G 63 1_555 A C 72 1_555 0.040 -1.654 3.352 2.724 7.712 32.480 -4.106 0.366 2.888 13.523 -4.777 33.467 31 AA_G62G63:C72C73_AA A 62 ? A 73 ? A 63 ? A 72 ? # _atom_sites.entry_id 4RZD _atom_sites.fract_transf_matrix[1][1] 0.011893 _atom_sites.fract_transf_matrix[1][2] 0.006866 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013733 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003592 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_