HEADER LIGASE 23-DEC-14 4RZQ TITLE STRUCTURAL ANALYSIS OF SUBSTRATE, REACTION INTERMEDIATE AND PRODUCT TITLE 2 BINDING IN HAEMOPHILUS INFLUENZAE BIOTIN CARBOXYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIOTIN CARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACETYL-COA CARBOXYLASE SUBUNIT A, ACC; COMPND 5 EC: 6.3.4.14, 6.4.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE RD KW20; SOURCE 3 ORGANISM_TAXID: 71421; SOURCE 4 STRAIN: ATCC 51907 / DSM 11121 / KW20 / RD; SOURCE 5 GENE: ACCC, HI_0972; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ATP GRASP, CARBOXYLASE, BIOTIN CARBOXYL CARRIER PROTEIN AND KEYWDS 2 CARBOXYLTRANSFERASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR T.C.BROUSSARD,S.PAKHOMOVA,D.B.NEAU,T.S.CHAMPION,R.BONNOT,G.L.WALDROP REVDAT 3 20-SEP-23 4RZQ 1 REMARK SEQADV REVDAT 2 08-JUL-15 4RZQ 1 JRNL REVDAT 1 10-JUN-15 4RZQ 0 JRNL AUTH T.C.BROUSSARD,S.PAKHOMOVA,D.B.NEAU,R.BONNOT,G.L.WALDROP JRNL TITL STRUCTURAL ANALYSIS OF SUBSTRATE, REACTION INTERMEDIATE, AND JRNL TITL 2 PRODUCT BINDING IN HAEMOPHILUS INFLUENZAE BIOTIN JRNL TITL 3 CARBOXYLASE. JRNL REF BIOCHEMISTRY V. 54 3860 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 26020841 JRNL DOI 10.1021/ACS.BIOCHEM.5B00340 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 28578 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1464 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2123 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3235 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11000 REMARK 3 B22 (A**2) : -0.11000 REMARK 3 B33 (A**2) : 0.35000 REMARK 3 B12 (A**2) : -0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.168 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.307 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3365 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3259 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4556 ; 2.055 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7506 ; 0.913 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 422 ; 6.797 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;37.753 ;23.862 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 573 ;17.197 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;14.180 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 513 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3757 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 728 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1691 ; 1.688 ; 1.697 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1690 ; 1.682 ; 1.694 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2109 ; 2.468 ; 2.532 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2110 ; 2.467 ; 2.536 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1674 ; 2.725 ; 2.052 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1675 ; 2.724 ; 2.055 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2447 ; 3.790 ; 3.015 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3713 ; 5.601 ;14.556 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3714 ; 5.601 ;14.571 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 109 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6310 -5.5030 -7.7110 REMARK 3 T TENSOR REMARK 3 T11: 0.1633 T22: 0.1052 REMARK 3 T33: 0.1382 T12: -0.0796 REMARK 3 T13: -0.1131 T23: 0.0399 REMARK 3 L TENSOR REMARK 3 L11: 3.7117 L22: 3.1056 REMARK 3 L33: 1.9061 L12: 0.3241 REMARK 3 L13: 0.5669 L23: -0.5002 REMARK 3 S TENSOR REMARK 3 S11: 0.0637 S12: -0.0246 S13: -0.1841 REMARK 3 S21: -0.2832 S22: 0.0722 S23: 0.5362 REMARK 3 S31: 0.2353 S32: -0.3762 S33: -0.1359 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 110 A 206 REMARK 3 ORIGIN FOR THE GROUP (A): 10.2340 26.3530 9.3990 REMARK 3 T TENSOR REMARK 3 T11: 0.6768 T22: 0.8074 REMARK 3 T33: 0.8576 T12: -0.0145 REMARK 3 T13: 0.0230 T23: 0.0548 REMARK 3 L TENSOR REMARK 3 L11: 3.3913 L22: 5.3793 REMARK 3 L33: 0.3923 L12: -4.0648 REMARK 3 L13: -1.0409 L23: 1.3934 REMARK 3 S TENSOR REMARK 3 S11: -0.4170 S12: -0.1271 S13: 0.1252 REMARK 3 S21: 0.2226 S22: 0.3639 S23: 0.3805 REMARK 3 S31: -0.0625 S32: 0.0262 S33: 0.0531 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 207 A 338 REMARK 3 ORIGIN FOR THE GROUP (A): 27.0960 7.9580 9.5830 REMARK 3 T TENSOR REMARK 3 T11: 0.1095 T22: 0.2600 REMARK 3 T33: 0.0899 T12: -0.0101 REMARK 3 T13: 0.0381 T23: -0.0586 REMARK 3 L TENSOR REMARK 3 L11: 2.9321 L22: 3.1452 REMARK 3 L33: 1.6099 L12: 1.2730 REMARK 3 L13: -0.5305 L23: 0.0315 REMARK 3 S TENSOR REMARK 3 S11: 0.2038 S12: -0.6583 S13: 0.4468 REMARK 3 S21: 0.3507 S22: -0.0526 S23: 0.3656 REMARK 3 S31: -0.1324 S32: -0.2153 S33: -0.1511 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 339 A 382 REMARK 3 ORIGIN FOR THE GROUP (A): 34.8510 7.8440 -15.4290 REMARK 3 T TENSOR REMARK 3 T11: 0.2152 T22: 0.0944 REMARK 3 T33: 0.0983 T12: 0.0095 REMARK 3 T13: 0.0170 T23: 0.0926 REMARK 3 L TENSOR REMARK 3 L11: 3.8384 L22: 1.7813 REMARK 3 L33: 3.3412 L12: -1.0702 REMARK 3 L13: 2.8010 L23: -1.5331 REMARK 3 S TENSOR REMARK 3 S11: -0.0266 S12: 0.4890 S13: 0.4458 REMARK 3 S21: -0.4290 S22: -0.0570 S23: -0.0162 REMARK 3 S31: -0.0600 S32: 0.1701 S33: 0.0835 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 383 A 444 REMARK 3 ORIGIN FOR THE GROUP (A): 39.7170 16.9700 -4.2550 REMARK 3 T TENSOR REMARK 3 T11: 0.1012 T22: 0.0283 REMARK 3 T33: 0.1774 T12: -0.0092 REMARK 3 T13: 0.0198 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 2.9860 L22: 2.9238 REMARK 3 L33: 3.4293 L12: -0.2637 REMARK 3 L13: -0.1618 L23: 0.1086 REMARK 3 S TENSOR REMARK 3 S11: 0.0811 S12: -0.0161 S13: 0.7117 REMARK 3 S21: -0.2015 S22: 0.0074 S23: -0.0116 REMARK 3 S31: -0.3075 S32: 0.0285 S33: -0.0886 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RZQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000087997. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : CRYOGENICALLY-COOLED SINGLE REMARK 200 CRYSTAL SI(220) SIDE BOUNCE REMARK 200 OPTICS : KB MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30073 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 39.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.50400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1DV1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG3350 0.2M KCL PROTEIN WAS REMARK 280 INCUBATED WITH SOLID N1 -METHOXYCARBONYLBIOTIN METHYL ESTER FOR REMARK 280 5 DAYS PRIOR TO CRYSTALLIZATION, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.12133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 68.24267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.12133 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.24267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 86.19700 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 648 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 VAL A 138 REMARK 465 SER A 139 REMARK 465 ASN A 140 REMARK 465 ASP A 141 REMARK 465 ILE A 142 REMARK 465 ALA A 160 REMARK 465 SER A 161 REMARK 465 GLY A 162 REMARK 465 GLY A 163 REMARK 465 GLY A 164 REMARK 465 GLY A 165 REMARK 465 GLY A 166 REMARK 465 ARG A 167 REMARK 465 GLY A 168 REMARK 465 MET A 169 REMARK 465 ALA A 189 REMARK 465 LYS A 190 REMARK 465 ALA A 191 REMARK 465 ALA A 192 REMARK 465 PHE A 193 REMARK 465 ASN A 194 REMARK 465 ASN A 195 REMARK 465 ASP A 196 REMARK 465 MET A 197 REMARK 465 VAL A 198 REMARK 465 ASN A 447 REMARK 465 GLU A 448 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 LYS A 159 CG CD CE NZ REMARK 470 ARG A 170 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 180 CG CD OE1 OE2 REMARK 470 ILE A 182 CG1 CG2 CD1 REMARK 470 LYS A 186 CG CD CE NZ REMARK 470 GLU A 188 CG CD OE1 OE2 REMARK 470 MET A 446 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 314 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 MET A 384 CG - SD - CE ANGL. DEV. = -15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 1 -161.02 -123.14 REMARK 500 SER A 59 -88.32 -127.65 REMARK 500 PHE A 84 -119.74 33.36 REMARK 500 ASP A 135 87.41 60.18 REMARK 500 ASP A 176 -59.86 -22.82 REMARK 500 GLU A 180 -72.18 -51.65 REMARK 500 LYS A 186 36.04 -89.25 REMARK 500 ALA A 187 21.74 -140.58 REMARK 500 ALA A 226 -147.06 42.80 REMARK 500 HIS A 236 -1.33 71.86 REMARK 500 ASN A 281 57.04 31.61 REMARK 500 THR A 291 70.86 -100.05 REMARK 500 ARG A 292 169.21 178.63 REMARK 500 TYR A 381 -153.87 -126.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE Y7Y A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 502 DBREF 4RZQ A 1 448 UNP P43873 ACCC_HAEIN 1 448 SEQADV 4RZQ MET A -19 UNP P43873 EXPRESSION TAG SEQADV 4RZQ GLY A -18 UNP P43873 EXPRESSION TAG SEQADV 4RZQ SER A -17 UNP P43873 EXPRESSION TAG SEQADV 4RZQ SER A -16 UNP P43873 EXPRESSION TAG SEQADV 4RZQ HIS A -15 UNP P43873 EXPRESSION TAG SEQADV 4RZQ HIS A -14 UNP P43873 EXPRESSION TAG SEQADV 4RZQ HIS A -13 UNP P43873 EXPRESSION TAG SEQADV 4RZQ HIS A -12 UNP P43873 EXPRESSION TAG SEQADV 4RZQ HIS A -11 UNP P43873 EXPRESSION TAG SEQADV 4RZQ HIS A -10 UNP P43873 EXPRESSION TAG SEQADV 4RZQ SER A -9 UNP P43873 EXPRESSION TAG SEQADV 4RZQ SER A -8 UNP P43873 EXPRESSION TAG SEQADV 4RZQ GLY A -7 UNP P43873 EXPRESSION TAG SEQADV 4RZQ LEU A -6 UNP P43873 EXPRESSION TAG SEQADV 4RZQ VAL A -5 UNP P43873 EXPRESSION TAG SEQADV 4RZQ PRO A -4 UNP P43873 EXPRESSION TAG SEQADV 4RZQ ARG A -3 UNP P43873 EXPRESSION TAG SEQADV 4RZQ GLY A -2 UNP P43873 EXPRESSION TAG SEQADV 4RZQ SER A -1 UNP P43873 EXPRESSION TAG SEQADV 4RZQ HIS A 0 UNP P43873 EXPRESSION TAG SEQRES 1 A 468 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 468 LEU VAL PRO ARG GLY SER HIS MET LEU GLU LYS VAL VAL SEQRES 3 A 468 ILE ALA ASN ARG GLY GLU ILE ALA LEU ARG ILE LEU ARG SEQRES 4 A 468 ALA CYS LYS GLU LEU GLY ILE LYS THR VAL ALA VAL HIS SEQRES 5 A 468 SER THR ALA ASP ARG ASP LEU LYS HIS VAL LEU LEU ALA SEQRES 6 A 468 ASP GLU THR ILE CYS ILE GLY PRO ALA PRO SER ALA LYS SEQRES 7 A 468 SER TYR LEU ASN ILE PRO ALA ILE ILE ALA ALA ALA GLU SEQRES 8 A 468 VAL THR GLY ALA ASP ALA ILE HIS PRO GLY TYR GLY PHE SEQRES 9 A 468 LEU SER GLU ASN ALA ASP PHE ALA GLU GLN VAL GLU ARG SEQRES 10 A 468 SER GLY PHE THR PHE ILE GLY PRO THR ALA ASP VAL ILE SEQRES 11 A 468 ARG LEU MET GLY ASP LYS VAL SER ALA ILE LYS ALA MET SEQRES 12 A 468 LYS LYS ALA GLY VAL PRO CYS VAL PRO GLY SER ASP GLY SEQRES 13 A 468 PRO VAL SER ASN ASP ILE ALA LYS ASN LYS GLU ILE ALA SEQRES 14 A 468 LYS ARG ILE GLY TYR PRO ILE ILE ILE LYS ALA SER GLY SEQRES 15 A 468 GLY GLY GLY GLY ARG GLY MET ARG VAL VAL ARG SER GLU SEQRES 16 A 468 ASP ALA LEU GLU GLU SER ILE ALA MET THR LYS ALA GLU SEQRES 17 A 468 ALA LYS ALA ALA PHE ASN ASN ASP MET VAL TYR MET GLU SEQRES 18 A 468 LYS TYR LEU GLU ASN PRO ARG HIS VAL GLU ILE GLN VAL SEQRES 19 A 468 LEU ALA ASP THR HIS GLY ASN ALA VAL TYR LEU ALA GLU SEQRES 20 A 468 ARG ASP CYS SER MET GLN ARG ARG HIS GLN LYS VAL VAL SEQRES 21 A 468 GLU GLU ALA PRO ALA PRO GLY ILE THR GLU GLU VAL ARG SEQRES 22 A 468 ARG ASP ILE GLY SER ARG CYS ALA ASN ALA CYS VAL GLU SEQRES 23 A 468 ILE GLY TYR ARG GLY ALA GLY THR PHE GLU PHE LEU TYR SEQRES 24 A 468 GLU ASN GLY GLU PHE TYR PHE ILE GLU MET ASN THR ARG SEQRES 25 A 468 ILE GLN VAL GLU HIS PRO VAL THR GLU MET ILE THR GLY SEQRES 26 A 468 VAL ASP LEU VAL LYS GLU GLN LEU ARG ILE ALA ALA GLY SEQRES 27 A 468 LEU PRO ILE SER PHE LYS GLN GLU ASP ILE LYS VAL LYS SEQRES 28 A 468 GLY HIS ALA MET GLU CYS ARG ILE ASN ALA GLU ASP PRO SEQRES 29 A 468 LYS THR PHE LEU PRO SER PRO GLY LYS VAL ASN HIS LEU SEQRES 30 A 468 HIS SER PRO GLY GLY LEU GLY VAL ARG TRP ASP SER HIS SEQRES 31 A 468 VAL TYR GLY GLY TYR THR VAL PRO PRO HIS TYR ASP SER SEQRES 32 A 468 MET ILE ALA LYS LEU ILE THR TYR GLY ASP THR ARG GLU SEQRES 33 A 468 VAL ALA ILE ARG ARG MET GLN ASN ALA LEU SER GLU THR SEQRES 34 A 468 ILE ILE ASP GLY ILE LYS THR ASN ILE PRO LEU HIS GLU SEQRES 35 A 468 LEU ILE LEU GLU ASP GLU ASN PHE GLN LYS GLY GLY THR SEQRES 36 A 468 ASN ILE HIS TYR LEU GLU LYS LYS LEU GLY MET ASN GLU HET Y7Y A 501 21 HET ADP A 502 27 HETNAM Y7Y METHYL (3AS,4S,6AR)-4-(5-METHOXY-5-OXOPENTYL)-2- HETNAM 2 Y7Y OXOHEXAHYDRO-1H-THIENO[3,4-D]IMIDAZOLE-1-CARBOXYLATE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 Y7Y C13 H20 N2 O5 S FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 HOH *84(H2 O) HELIX 1 1 ARG A 10 GLY A 25 1 16 HELIX 2 2 ALA A 35 ARG A 37 5 3 HELIX 3 3 LEU A 39 ALA A 45 1 7 HELIX 4 4 PRO A 55 SER A 59 5 5 HELIX 5 5 ASN A 62 GLY A 74 1 13 HELIX 6 6 ASN A 88 SER A 98 1 11 HELIX 7 7 THR A 106 GLY A 114 1 9 HELIX 8 8 ASP A 115 GLY A 127 1 13 HELIX 9 9 LYS A 144 GLY A 153 1 10 HELIX 10 10 ALA A 177 LYS A 186 1 10 HELIX 11 11 THR A 249 GLY A 268 1 20 HELIX 12 12 HIS A 297 GLY A 305 1 9 HELIX 13 13 ASP A 307 ALA A 317 1 11 HELIX 14 14 LYS A 324 ILE A 328 5 5 HELIX 15 15 THR A 394 THR A 409 1 16 HELIX 16 16 ASN A 417 GLU A 426 1 10 HELIX 17 17 ASP A 427 GLY A 433 1 7 HELIX 18 18 HIS A 438 MET A 446 1 9 SHEET 1 A 5 GLU A 47 GLY A 52 0 SHEET 2 A 5 LYS A 27 SER A 33 1 N ALA A 30 O GLU A 47 SHEET 3 A 5 LYS A 4 ILE A 7 1 N VAL A 5 O LYS A 27 SHEET 4 A 5 ALA A 77 HIS A 79 1 O HIS A 79 N VAL A 6 SHEET 5 A 5 THR A 101 PHE A 102 1 O THR A 101 N ILE A 78 SHEET 1 B 3 VAL A 171 VAL A 172 0 SHEET 2 B 3 ILE A 156 ILE A 158 -1 N ILE A 156 O VAL A 172 SHEET 3 B 3 MET A 200 LYS A 202 -1 O GLU A 201 N ILE A 157 SHEET 1 C 8 GLU A 283 ASN A 290 0 SHEET 2 C 8 GLY A 271 GLU A 280 -1 N GLU A 276 O GLU A 288 SHEET 3 C 8 ARG A 208 ALA A 216 -1 N ALA A 216 O GLY A 271 SHEET 4 C 8 ALA A 222 ARG A 234 -1 O LEU A 225 N GLN A 213 SHEET 5 C 8 GLN A 237 ALA A 243 -1 O GLN A 237 N ARG A 234 SHEET 6 C 8 HIS A 333 ASN A 340 -1 O ALA A 334 N ALA A 243 SHEET 7 C 8 MET A 384 GLY A 392 -1 O ALA A 386 N ILE A 339 SHEET 8 C 8 VAL A 365 ASP A 368 -1 N ARG A 366 O ILE A 389 SHEET 1 D 2 GLY A 352 LYS A 353 0 SHEET 2 D 2 THR A 376 VAL A 377 -1 O VAL A 377 N GLY A 352 SHEET 1 E 2 HIS A 356 HIS A 358 0 SHEET 2 E 2 ILE A 410 ASP A 412 -1 O ASP A 412 N HIS A 356 CISPEP 1 GLY A 136 PRO A 137 0 0.08 CISPEP 2 TYR A 154 PRO A 155 0 -5.61 CISPEP 3 ALA A 243 PRO A 244 0 -5.49 SITE 1 AC1 12 ASN A 9 ARG A 10 TYR A 82 PHE A 84 SITE 2 AC1 12 LYS A 238 ARG A 292 GLN A 294 VAL A 295 SITE 3 AC1 12 GLU A 296 ARG A 338 ASP A 382 HOH A 602 SITE 1 AC2 7 ILE A 157 GLU A 201 LYS A 202 TYR A 203 SITE 2 AC2 7 LEU A 204 LEU A 278 ILE A 437 CRYST1 86.197 86.197 102.364 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011601 0.006698 0.000000 0.00000 SCALE2 0.000000 0.013396 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009769 0.00000