HEADER TRANSCRIPTION/DNA 31-DEC-14 4S0H TITLE TBX5 DB, NKX2.5 HD, ANF DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-BOX TRANSCRIPTION FACTOR TBX5; COMPND 3 CHAIN: A, E; COMPND 4 FRAGMENT: DB (UNP RESIDUES 53-238); COMPND 5 SYNONYM: T-BOX PROTEIN 5; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HOMEOBOX PROTEIN NKX-2.5; COMPND 9 CHAIN: B, F; COMPND 10 FRAGMENT: HD (UNP RESIDUES 142-194); COMPND 11 SYNONYM: CARDIAC-SPECIFIC HOMEOBOX, HOMEOBOX PROTEIN CSX, HOMEOBOX COMPND 12 PROTEIN NK-2 HOMOLOG E; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: 5'-D(*TP*CP*TP*CP*AP*CP*AP*CP*CP*TP*TP*TP*GP*AP*AP*GP*TP*GP COMPND 16 *G)-3'; COMPND 17 CHAIN: C, G; COMPND 18 ENGINEERED: YES; COMPND 19 OTHER_DETAILS: ANF DNA STRAND 1; COMPND 20 MOL_ID: 4; COMPND 21 MOLECULE: 5'-D(*CP*CP*AP*CP*TP*TP*CP*AP*AP*AP*GP*GP*TP*GP*TP*GP*AP*GP COMPND 22 *A)-3'; COMPND 23 CHAIN: D, H; COMPND 24 ENGINEERED: YES; COMPND 25 OTHER_DETAILS: ANF DNA STRAND 2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TBX5; SOURCE 6 EXPRESSION_SYSTEM: UNIDENTIFIED; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 32644; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: NKX2-5, CSX, NKX2.5, NKX2E; SOURCE 13 EXPRESSION_SYSTEM: UNIDENTIFIED; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 32644; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630; SOURCE 19 MOL_ID: 4; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 22 ORGANISM_TAXID: 32630 KEYWDS TRANSCRIPTION FACTOR, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.PRADHAN REVDAT 4 28-FEB-24 4S0H 1 SEQADV REVDAT 3 13-APR-16 4S0H 1 JRNL REVDAT 2 16-MAR-16 4S0H 1 JRNL REVDAT 1 16-DEC-15 4S0H 0 JRNL AUTH L.PRADHAN,S.GOPAL,S.LI,S.ASHUR,S.SURYANARAYANAN,H.KASAHARA, JRNL AUTH 2 H.J.NAM JRNL TITL INTERMOLECULAR INTERACTIONS OF CARDIAC TRANSCRIPTION FACTORS JRNL TITL 2 NKX2.5 AND TBX5. JRNL REF BIOCHEMISTRY V. 55 1702 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 26926761 JRNL DOI 10.1021/ACS.BIOCHEM.6B00171 REMARK 2 REMARK 2 RESOLUTION. 2.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.2_869) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.120 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 3 NUMBER OF REFLECTIONS : 18072 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1807 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.1675 - 6.6121 0.96 1357 151 0.1623 0.1840 REMARK 3 2 6.6121 - 5.2526 0.99 1374 152 0.1702 0.2143 REMARK 3 3 5.2526 - 4.5899 0.99 1351 150 0.1550 0.2301 REMARK 3 4 4.5899 - 4.1708 0.98 1344 149 0.1628 0.2265 REMARK 3 5 4.1708 - 3.8722 0.97 1335 149 0.1817 0.2466 REMARK 3 6 3.8722 - 3.6440 0.99 1346 149 0.1891 0.2429 REMARK 3 7 3.6440 - 3.4617 0.98 1342 149 0.2070 0.2514 REMARK 3 8 3.4617 - 3.3111 0.98 1331 149 0.1937 0.2369 REMARK 3 9 3.3111 - 3.1837 0.96 1288 144 0.2095 0.3241 REMARK 3 10 3.1837 - 3.0739 0.91 1247 139 0.2500 0.3669 REMARK 3 11 3.0739 - 2.9778 0.80 1080 119 0.2889 0.3549 REMARK 3 12 2.9778 - 2.8927 0.77 1035 115 0.2921 0.4157 REMARK 3 13 2.8927 - 2.8166 0.61 835 92 0.3160 0.4249 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.35620 REMARK 3 B22 (A**2) : 27.04180 REMARK 3 B33 (A**2) : -17.68560 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -8.64440 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 5636 REMARK 3 ANGLE : 1.387 7931 REMARK 3 CHIRALITY : 0.063 861 REMARK 3 PLANARITY : 0.008 740 REMARK 3 DIHEDRAL : 25.265 2213 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4S0H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000088024. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97670 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18168 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.817 REMARK 200 RESOLUTION RANGE LOW (A) : 74.481 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.22950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 189 REMARK 465 GLU A 190 REMARK 465 ASN A 191 REMARK 465 ASN A 192 REMARK 465 GLY A 193 REMARK 465 PHE A 194 REMARK 465 GLY A 195 REMARK 465 SER A 196 REMARK 465 LYS A 197 REMARK 465 ASN A 198 REMARK 465 GLU E 190 REMARK 465 ASN E 191 REMARK 465 ASN E 192 REMARK 465 GLY E 193 REMARK 465 PHE E 194 REMARK 465 GLY E 195 REMARK 465 SER E 196 REMARK 465 LYS E 197 REMARK 465 ASN E 198 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE MET A 131 OH TYR A 179 1.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS E 97 CE LYS E 97 NZ 0.219 REMARK 500 DC C 6 C1' DC C 6 N1 0.082 REMARK 500 DA H 3 O3' DA H 3 C3' -0.050 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 131 CG - SD - CE ANGL. DEV. = 15.8 DEGREES REMARK 500 ASP E 118 CB - CA - C ANGL. DEV. = 20.3 DEGREES REMARK 500 ASN E 119 N - CA - CB ANGL. DEV. = -25.5 DEGREES REMARK 500 ALA E 188 CB - CA - C ANGL. DEV. = 9.2 DEGREES REMARK 500 ALA E 200 O - C - N ANGL. DEV. = -10.0 DEGREES REMARK 500 CYS E 202 CA - C - N ANGL. DEV. = -14.3 DEGREES REMARK 500 CYS E 202 O - C - N ANGL. DEV. = 11.5 DEGREES REMARK 500 DA C 5 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC C 6 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG C 13 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG C 19 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC D 4 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 DG D 11 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 DG D 18 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG G 18 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DA H 3 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 DA H 3 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC H 4 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 DC H 4 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG H 11 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT H 13 O4' - C4' - C3' ANGL. DEV. = -4.9 DEGREES REMARK 500 DT H 13 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 70 -20.63 -141.29 REMARK 500 PRO A 132 107.26 -50.99 REMARK 500 LEU A 152 133.18 -34.87 REMARK 500 ALA A 200 -11.31 -146.10 REMARK 500 PRO A 207 -39.56 -34.13 REMARK 500 GLN A 218 -72.70 -95.88 REMARK 500 ALA A 233 31.89 -98.74 REMARK 500 ARG A 237 -161.35 -76.04 REMARK 500 GLN B 159 -77.20 -96.18 REMARK 500 ASP E 111 65.30 -100.18 REMARK 500 ALA E 117 -159.69 -94.74 REMARK 500 ASP E 118 -134.26 60.69 REMARK 500 PRO E 132 99.28 -47.76 REMARK 500 PHE E 155 49.07 -95.17 REMARK 500 ALA E 188 134.53 -177.26 REMARK 500 ALA E 200 -36.57 -138.64 REMARK 500 GLN E 218 -82.59 -99.40 REMARK 500 GLN F 133 -71.42 -63.85 REMARK 500 SER F 156 5.49 -60.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA E 117 ASP E 118 143.32 REMARK 500 PHE E 201 CYS E 202 -147.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA E 200 -16.80 REMARK 500 REMARK 500 REMARK: NULL DBREF 4S0H A 53 238 UNP Q99593 TBX5_HUMAN 53 238 DBREF 4S0H B 142 194 UNP P52952 NKX25_HUMAN 142 194 DBREF 4S0H E 53 238 UNP Q99593 TBX5_HUMAN 53 238 DBREF 4S0H F 105 157 UNP P52952 NKX25_HUMAN 142 194 DBREF 4S0H C 1 19 PDB 4S0H 4S0H 1 19 DBREF 4S0H G 1 19 PDB 4S0H 4S0H 1 19 DBREF 4S0H D 1 19 PDB 4S0H 4S0H 1 19 DBREF 4S0H H 1 19 PDB 4S0H 4S0H 1 19 SEQADV 4S0H SER B 193 UNP P52952 CYS 193 CONFLICT SEQADV 4S0H SER F 156 UNP P52952 CYS 193 CONFLICT SEQRES 1 A 186 GLY ILE LYS VAL PHE LEU HIS GLU ARG GLU LEU TRP LEU SEQRES 2 A 186 LYS PHE HIS GLU VAL GLY THR GLU MET ILE ILE THR LYS SEQRES 3 A 186 ALA GLY ARG ARG MET PHE PRO SER TYR LYS VAL LYS VAL SEQRES 4 A 186 THR GLY LEU ASN PRO LYS THR LYS TYR ILE LEU LEU MET SEQRES 5 A 186 ASP ILE VAL PRO ALA ASP ASP HIS ARG TYR LYS PHE ALA SEQRES 6 A 186 ASP ASN LYS TRP SER VAL THR GLY LYS ALA GLU PRO ALA SEQRES 7 A 186 MET PRO GLY ARG LEU TYR VAL HIS PRO ASP SER PRO ALA SEQRES 8 A 186 THR GLY ALA HIS TRP MET ARG GLN LEU VAL SER PHE GLN SEQRES 9 A 186 LYS LEU LYS LEU THR ASN ASN HIS LEU ASP PRO PHE GLY SEQRES 10 A 186 HIS ILE ILE LEU ASN SER MET HIS LYS TYR GLN PRO ARG SEQRES 11 A 186 LEU HIS ILE VAL LYS ALA ASP GLU ASN ASN GLY PHE GLY SEQRES 12 A 186 SER LYS ASN THR ALA PHE CYS THR HIS VAL PHE PRO GLU SEQRES 13 A 186 THR ALA PHE ILE ALA VAL THR SER TYR GLN ASN HIS LYS SEQRES 14 A 186 ILE THR GLN LEU LYS ILE GLU ASN ASN PRO PHE ALA LYS SEQRES 15 A 186 GLY PHE ARG GLY SEQRES 1 B 53 ARG VAL LEU PHE SER GLN ALA GLN VAL TYR GLU LEU GLU SEQRES 2 B 53 ARG ARG PHE LYS GLN GLN ARG TYR LEU SER ALA PRO GLU SEQRES 3 B 53 ARG ASP GLN LEU ALA SER VAL LEU LYS LEU THR SER THR SEQRES 4 B 53 GLN VAL LYS ILE TRP PHE GLN ASN ARG ARG TYR LYS SER SEQRES 5 B 53 LYS SEQRES 1 E 186 GLY ILE LYS VAL PHE LEU HIS GLU ARG GLU LEU TRP LEU SEQRES 2 E 186 LYS PHE HIS GLU VAL GLY THR GLU MET ILE ILE THR LYS SEQRES 3 E 186 ALA GLY ARG ARG MET PHE PRO SER TYR LYS VAL LYS VAL SEQRES 4 E 186 THR GLY LEU ASN PRO LYS THR LYS TYR ILE LEU LEU MET SEQRES 5 E 186 ASP ILE VAL PRO ALA ASP ASP HIS ARG TYR LYS PHE ALA SEQRES 6 E 186 ASP ASN LYS TRP SER VAL THR GLY LYS ALA GLU PRO ALA SEQRES 7 E 186 MET PRO GLY ARG LEU TYR VAL HIS PRO ASP SER PRO ALA SEQRES 8 E 186 THR GLY ALA HIS TRP MET ARG GLN LEU VAL SER PHE GLN SEQRES 9 E 186 LYS LEU LYS LEU THR ASN ASN HIS LEU ASP PRO PHE GLY SEQRES 10 E 186 HIS ILE ILE LEU ASN SER MET HIS LYS TYR GLN PRO ARG SEQRES 11 E 186 LEU HIS ILE VAL LYS ALA ASP GLU ASN ASN GLY PHE GLY SEQRES 12 E 186 SER LYS ASN THR ALA PHE CYS THR HIS VAL PHE PRO GLU SEQRES 13 E 186 THR ALA PHE ILE ALA VAL THR SER TYR GLN ASN HIS LYS SEQRES 14 E 186 ILE THR GLN LEU LYS ILE GLU ASN ASN PRO PHE ALA LYS SEQRES 15 E 186 GLY PHE ARG GLY SEQRES 1 F 53 ARG VAL LEU PHE SER GLN ALA GLN VAL TYR GLU LEU GLU SEQRES 2 F 53 ARG ARG PHE LYS GLN GLN ARG TYR LEU SER ALA PRO GLU SEQRES 3 F 53 ARG ASP GLN LEU ALA SER VAL LEU LYS LEU THR SER THR SEQRES 4 F 53 GLN VAL LYS ILE TRP PHE GLN ASN ARG ARG TYR LYS SER SEQRES 5 F 53 LYS SEQRES 1 C 19 DT DC DT DC DA DC DA DC DC DT DT DT DG SEQRES 2 C 19 DA DA DG DT DG DG SEQRES 1 D 19 DC DC DA DC DT DT DC DA DA DA DG DG DT SEQRES 2 D 19 DG DT DG DA DG DA SEQRES 1 G 19 DT DC DT DC DA DC DA DC DC DT DT DT DG SEQRES 2 G 19 DA DA DG DT DG DG SEQRES 1 H 19 DC DC DA DC DT DT DC DA DA DA DG DG DT SEQRES 2 H 19 DG DT DG DA DG DA FORMUL 9 HOH *2(H2 O) HELIX 1 1 GLU A 60 GLU A 69 1 10 HELIX 2 2 GLY A 145 GLN A 151 1 7 HELIX 3 3 PRO A 207 ALA A 210 5 4 HELIX 4 4 ASN A 219 ASN A 230 1 12 HELIX 5 5 PRO A 231 ARG A 237 5 7 HELIX 6 6 SER B 146 GLN B 160 1 15 HELIX 7 7 PRO B 166 LYS B 176 1 11 HELIX 8 8 THR B 178 SER B 193 1 16 HELIX 9 9 GLU E 60 GLY E 71 1 12 HELIX 10 10 GLY E 145 ARG E 150 1 6 HELIX 11 11 PHE E 206 ALA E 210 5 5 HELIX 12 12 ASN E 219 ASN E 230 1 12 HELIX 13 13 PRO E 231 ARG E 237 5 7 HELIX 14 14 SER F 109 LYS F 121 1 13 HELIX 15 15 SER F 127 LYS F 139 1 13 HELIX 16 16 THR F 141 SER F 156 1 16 SHEET 1 A 3 LYS A 55 LEU A 58 0 SHEET 2 A 3 TYR A 87 THR A 92 -1 O THR A 92 N LYS A 55 SHEET 3 A 3 VAL A 153 PHE A 155 -1 O PHE A 155 N TYR A 87 SHEET 1 B 5 GLU A 73 ILE A 75 0 SHEET 2 B 5 PHE A 211 VAL A 214 1 O VAL A 214 N MET A 74 SHEET 3 B 5 LYS A 178 LYS A 187 -1 N TYR A 179 O PHE A 211 SHEET 4 B 5 LYS A 99 PRO A 108 -1 N ILE A 101 O VAL A 186 SHEET 5 B 5 ALA A 143 THR A 144 -1 O ALA A 143 N TYR A 100 SHEET 1 C 4 TYR A 136 VAL A 137 0 SHEET 2 C 4 LYS A 99 PRO A 108 -1 N MET A 104 O TYR A 136 SHEET 3 C 4 LYS A 178 LYS A 187 -1 O VAL A 186 N ILE A 101 SHEET 4 C 4 CYS A 202 VAL A 205 -1 O CYS A 202 N ILE A 185 SHEET 1 D 3 ARG A 81 ARG A 82 0 SHEET 2 D 3 LYS A 159 THR A 161 -1 O LEU A 160 N ARG A 81 SHEET 3 D 3 ILE A 171 ILE A 172 1 O ILE A 171 N THR A 161 SHEET 1 E 2 HIS A 112 PHE A 116 0 SHEET 2 E 2 TRP A 121 LYS A 126 -1 O GLY A 125 N ARG A 113 SHEET 1 F 3 LYS E 55 LEU E 58 0 SHEET 2 F 3 LYS E 88 THR E 92 -1 O THR E 92 N LYS E 55 SHEET 3 F 3 VAL E 153 SER E 154 -1 O VAL E 153 N VAL E 89 SHEET 1 G 4 GLU E 73 ILE E 75 0 SHEET 2 G 4 PHE E 211 VAL E 214 1 O VAL E 214 N MET E 74 SHEET 3 G 4 HIS E 177 VAL E 186 -1 N TYR E 179 O PHE E 211 SHEET 4 G 4 CYS E 202 HIS E 204 -1 O HIS E 204 N LEU E 183 SHEET 1 H 4 CYS E 202 HIS E 204 0 SHEET 2 H 4 HIS E 177 VAL E 186 -1 N LEU E 183 O HIS E 204 SHEET 3 H 4 LYS E 99 PHE E 116 -1 N VAL E 107 O GLN E 180 SHEET 4 H 4 TRP E 121 GLY E 125 -1 O THR E 124 N ARG E 113 SHEET 1 I 3 TRP E 121 GLY E 125 0 SHEET 2 I 3 LYS E 99 PHE E 116 -1 N ARG E 113 O THR E 124 SHEET 3 I 3 TYR E 136 VAL E 137 -1 O TYR E 136 N MET E 104 SHEET 1 J 3 TYR E 136 VAL E 137 0 SHEET 2 J 3 LYS E 99 PHE E 116 -1 N MET E 104 O TYR E 136 SHEET 3 J 3 ALA E 143 THR E 144 -1 O ALA E 143 N TYR E 100 SHEET 1 K 5 ALA E 143 THR E 144 0 SHEET 2 K 5 LYS E 99 PHE E 116 -1 N TYR E 100 O ALA E 143 SHEET 3 K 5 HIS E 177 VAL E 186 -1 O GLN E 180 N VAL E 107 SHEET 4 K 5 PHE E 211 VAL E 214 -1 O PHE E 211 N TYR E 179 SHEET 5 K 5 GLU E 73 ILE E 75 1 N MET E 74 O VAL E 214 SHEET 1 L 3 ARG E 81 ARG E 82 0 SHEET 2 L 3 LYS E 159 THR E 161 -1 O LEU E 160 N ARG E 81 SHEET 3 L 3 ILE E 171 ILE E 172 1 O ILE E 171 N THR E 161 CISPEP 1 PHE A 84 PRO A 85 0 4.08 CISPEP 2 ALA A 130 MET A 131 0 -26.47 CISPEP 3 SER A 141 PRO A 142 0 -13.86 CISPEP 4 PHE E 84 PRO E 85 0 0.53 CISPEP 5 SER E 141 PRO E 142 0 -2.19 CRYST1 70.217 78.459 78.695 90.00 108.83 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014242 0.000000 0.004857 0.00000 SCALE2 0.000000 0.012746 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013426 0.00000