HEADER LIGASE 31-DEC-14 4S0K TITLE BIPHENYLALANINE MODIFIED THREONYL-TRNA SYNTHETASE FROM PYROCOCCUS TITLE 2 ABYSSI: 11BIF, 42F, 79V, AND 123A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: THREONINE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THREONYL-TRNA SYNTHETASE; COMPND 5 SYNONYM: THREONYL-TRNA SYNTHETASE, THRRS; COMPND 6 EC: 6.1.1.3; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI GE5; SOURCE 3 ORGANISM_TAXID: 272844; SOURCE 4 STRAIN: GE5 / ORSAY; SOURCE 5 GENE: PAB1490, PYRAB13430, THRS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-22B AND PULTRA KEYWDS BETA-ALPHA-BETA FOLD, EDITING DOMAIN, TRNA-SYNTHETASE, LIGASE, KEYWDS 2 BIPHENYLALANINE AND UNNATURAL AMINO ACID, THREONINE-TRNA LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR A.D.PEARSON,J.H.MILLS,Y.SONG,F.NASERTORABI,G.W.HAN,D.BAKER, AUTHOR 2 R.C.STEVENS,P.G.SCHULTZ REVDAT 3 20-SEP-23 4S0K 1 REMARK SEQADV LINK REVDAT 2 22-NOV-17 4S0K 1 REMARK REVDAT 1 18-MAR-15 4S0K 0 JRNL AUTH A.D.PEARSON,J.H.MILLS,Y.SONG,F.NASERTORABI,G.W.HAN,D.BAKER, JRNL AUTH 2 R.C.STEVENS,P.G.SCHULTZ JRNL TITL TRANSITION STATES. TRAPPING A TRANSITION STATE IN A JRNL TITL 2 COMPUTATIONALLY DESIGNED PROTEIN BOTTLE. JRNL REF SCIENCE V. 347 863 2015 JRNL REFN ISSN 0036-8075 JRNL PMID 25700516 JRNL DOI 10.1126/SCIENCE.AAA2424 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 10543 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 523 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 775 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.2100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1117 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 50 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.64000 REMARK 3 B22 (A**2) : -1.93000 REMARK 3 B33 (A**2) : 11.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.040 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.033 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.719 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1205 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1180 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1631 ; 1.768 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2735 ; 0.832 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 150 ; 7.032 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 53 ;36.632 ;25.094 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 224 ;16.612 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;13.568 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 177 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1349 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 255 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 585 ; 2.048 ; 2.400 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 584 ; 2.041 ; 2.396 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 737 ; 2.762 ; 3.585 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 738 ; 2.761 ; 3.590 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 620 ; 2.996 ; 2.889 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 620 ; 2.992 ; 2.889 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 894 ; 4.703 ; 4.149 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1295 ; 6.589 ;19.948 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1296 ; 6.587 ;19.975 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 140 REMARK 3 ORIGIN FOR THE GROUP (A): 24.4665 90.8923 200.3860 REMARK 3 T TENSOR REMARK 3 T11: 0.0429 T22: 0.0043 REMARK 3 T33: 0.0721 T12: 0.0048 REMARK 3 T13: -0.0174 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 1.6642 L22: 1.3763 REMARK 3 L33: 0.6856 L12: -0.3601 REMARK 3 L13: -0.2438 L23: 0.8174 REMARK 3 S TENSOR REMARK 3 S11: -0.0993 S12: -0.0272 S13: 0.0844 REMARK 3 S21: 0.1167 S22: -0.0017 S23: 0.0294 REMARK 3 S31: 0.0387 S32: 0.0186 S33: 0.1010 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4S0K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000088027. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : BLUE-ICE REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11066 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.38900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1Y2Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE, 15% PEG 6000, PH REMARK 280 4.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.21500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.57500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 45.37000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.21500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.57500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.37000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.21500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.57500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 45.37000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.21500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 39.57500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 45.37000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 52.43000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 158.30000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 350 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 141 REMARK 465 GLU A 142 REMARK 465 GLU A 143 REMARK 465 LEU A 144 REMARK 465 GLU A 145 REMARK 465 HIS A 146 REMARK 465 HIS A 147 REMARK 465 HIS A 148 REMARK 465 HIS A 149 REMARK 465 HIS A 150 REMARK 465 HIS A 151 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 34 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 16 -126.47 -107.34 REMARK 500 ASN A 52 72.67 -164.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Y2Q RELATED DB: PDB REMARK 900 PARENT SCAFFOLD DBREF 4S0K A 1 143 UNP Q9UZ14 SYT_PYRAB 1 143 SEQADV 4S0K ALA A 8 UNP Q9UZ14 SER 8 ENGINEERED MUTATION SEQADV 4S0K BIF A 11 UNP Q9UZ14 ILE 11 ENGINEERED MUTATION SEQADV 4S0K VAL A 79 UNP Q9UZ14 TYR 79 ENGINEERED MUTATION SEQADV 4S0K TRP A 81 UNP Q9UZ14 PHE 81 ENGINEERED MUTATION SEQADV 4S0K ILE A 121 UNP Q9UZ14 LYS 121 ENGINEERED MUTATION SEQADV 4S0K ALA A 123 UNP Q9UZ14 PHE 123 ENGINEERED MUTATION SEQADV 4S0K LEU A 144 UNP Q9UZ14 EXPRESSION TAG SEQADV 4S0K GLU A 145 UNP Q9UZ14 EXPRESSION TAG SEQADV 4S0K HIS A 146 UNP Q9UZ14 EXPRESSION TAG SEQADV 4S0K HIS A 147 UNP Q9UZ14 EXPRESSION TAG SEQADV 4S0K HIS A 148 UNP Q9UZ14 EXPRESSION TAG SEQADV 4S0K HIS A 149 UNP Q9UZ14 EXPRESSION TAG SEQADV 4S0K HIS A 150 UNP Q9UZ14 EXPRESSION TAG SEQADV 4S0K HIS A 151 UNP Q9UZ14 EXPRESSION TAG SEQRES 1 A 151 MET ARG VAL LEU LEU ILE HIS ALA ASP TYR BIF GLU TYR SEQRES 2 A 151 GLU VAL LYS ASP LYS ALA LEU LYS ASN PRO GLU PRO ILE SEQRES 3 A 151 SER GLU ASP MET LYS ARG GLY ARG MET GLU GLU VAL LEU SEQRES 4 A 151 VAL ALA PHE ILE SER VAL GLU LYS VAL ASP GLU LYS ASN SEQRES 5 A 151 PRO GLU GLU VAL SER LEU LYS ALA ILE GLU GLU ILE SER SEQRES 6 A 151 LYS VAL ALA GLU GLN VAL LYS ALA GLU ASN VAL PHE VAL SEQRES 7 A 151 VAL PRO TRP ALA HIS LEU SER SER GLU LEU ALA LYS PRO SEQRES 8 A 151 SER VAL ALA MET ASP ILE LEU ASN ARG VAL TYR GLN GLY SEQRES 9 A 151 LEU LYS GLU ARG GLY PHE ASN VAL GLY LYS ALA PRO PHE SEQRES 10 A 151 GLY TYR TYR ILE ALA ALA LYS ILE SER CYS LYS GLY HIS SEQRES 11 A 151 PRO LEU ALA GLU LEU SER ARG THR ILE VAL PRO GLU GLU SEQRES 12 A 151 LEU GLU HIS HIS HIS HIS HIS HIS MODRES 4S0K BIF A 11 PHE HET BIF A 11 17 HET PEG A 201 7 HETNAM BIF (R)-2-AMINO-3-(4-PHENYLCYCLOHEXYL)PROPANOIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN BIF BIPHENYLALANINE FORMUL 1 BIF C15 H15 N O2 FORMUL 2 PEG C4 H10 O3 FORMUL 3 HOH *50(H2 O) HELIX 1 1 SER A 27 MET A 30 5 4 HELIX 2 2 GLU A 46 LYS A 51 5 6 HELIX 3 3 ASN A 52 VAL A 71 1 20 HELIX 4 4 LYS A 90 GLY A 109 1 20 SHEET 1 A 5 ASN A 111 LYS A 114 0 SHEET 2 A 5 ASN A 75 PRO A 80 1 N VAL A 78 O GLY A 113 SHEET 3 A 5 ARG A 32 SER A 44 1 N ALA A 41 O PHE A 77 SHEET 4 A 5 ARG A 2 LYS A 18 -1 N ARG A 2 O SER A 44 SHEET 5 A 5 TYR A 119 CYS A 127 -1 O TYR A 120 N ASP A 17 SHEET 1 B 5 ASN A 111 LYS A 114 0 SHEET 2 B 5 ASN A 75 PRO A 80 1 N VAL A 78 O GLY A 113 SHEET 3 B 5 ARG A 32 SER A 44 1 N ALA A 41 O PHE A 77 SHEET 4 B 5 ARG A 2 LYS A 18 -1 N ARG A 2 O SER A 44 SHEET 5 B 5 GLU A 134 THR A 138 -1 O LEU A 135 N LEU A 5 LINK C TYR A 10 N BIF A 11 1555 1555 1.35 LINK C BIF A 11 N GLU A 12 1555 1555 1.32 SITE 1 AC1 8 ILE A 43 SER A 44 VAL A 45 PRO A 80 SITE 2 AC1 8 TRP A 81 ALA A 82 PHE A 117 GLY A 118 CRYST1 52.430 79.150 90.740 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019073 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012634 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011021 0.00000