HEADER HYDROLASE 12-JAN-15 4S1C TITLE CRYSTAL STRUCTURE OF L. MONOCYTOGENES PHOSPHODIESTERASE PGPH HD DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: LMO1466 PROTEIN; COMPND 3 CHAIN: D, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 169963; SOURCE 4 STRAIN: ATCC BAA-679 / EGD-E; SOURCE 5 GENE: LMO1466, PGPH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-28A(+) KEYWDS C-DI-AMP, LISTERIA MONOCYTOGENES, PHOSPHODIESTERASE, HD DOMAIN, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.LUO,L.TONG REVDAT 4 28-FEB-24 4S1C 1 REMARK LINK REVDAT 3 22-NOV-17 4S1C 1 REMARK REVDAT 2 04-MAR-15 4S1C 1 JRNL REVDAT 1 11-FEB-15 4S1C 0 JRNL AUTH T.N.HUYNH,S.LUO,D.PENSINGER,J.D.SAUER,L.TONG,J.J.WOODWARD JRNL TITL AN HD-DOMAIN PHOSPHODIESTERASE MEDIATES COOPERATIVE JRNL TITL 2 HYDROLYSIS OF C-DI-AMP TO AFFECT BACTERIAL GROWTH AND JRNL TITL 3 VIRULENCE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 E747 2015 JRNL REFN ISSN 0027-8424 JRNL PMID 25583510 JRNL DOI 10.1073/PNAS.1416485112 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 27525 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.260 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.6013 - 5.7557 0.99 1872 152 0.1640 0.1807 REMARK 3 2 5.7557 - 4.5781 1.00 1856 146 0.1669 0.1923 REMARK 3 3 4.5781 - 4.0022 1.00 1837 142 0.1498 0.2056 REMARK 3 4 4.0022 - 3.6375 0.99 1817 143 0.1646 0.1890 REMARK 3 5 3.6375 - 3.3775 0.99 1844 140 0.1974 0.2488 REMARK 3 6 3.3775 - 3.1788 0.99 1827 148 0.1980 0.2547 REMARK 3 7 3.1788 - 3.0199 0.98 1802 141 0.1981 0.2609 REMARK 3 8 3.0199 - 2.8887 0.99 1839 142 0.2018 0.2707 REMARK 3 9 2.8887 - 2.7776 0.99 1789 141 0.1889 0.2684 REMARK 3 10 2.7776 - 2.6819 0.98 1816 142 0.2014 0.2436 REMARK 3 11 2.6819 - 2.5981 0.98 1802 140 0.2082 0.2567 REMARK 3 12 2.5981 - 2.5239 0.98 1807 138 0.2216 0.3097 REMARK 3 13 2.5239 - 2.4575 0.98 1798 143 0.2447 0.3346 REMARK 3 14 2.4575 - 2.3976 0.98 1820 141 0.2799 0.3368 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3365 REMARK 3 ANGLE : 1.116 4551 REMARK 3 CHIRALITY : 0.042 522 REMARK 3 PLANARITY : 0.007 582 REMARK 3 DIHEDRAL : 13.890 1275 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4S1C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000088055. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27548 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.398 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.40600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL2, 0.1 M BIS-TRIS, 25% PEG REMARK 280 3350, PH 6.5, TEMPERATURE 293K, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.59433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.18867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.89150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 76.48583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 15.29717 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 -58.28100 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 100.94565 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -30.59433 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA D 494 REMARK 465 ASN D 495 REMARK 465 PRO D 496 REMARK 465 GLU D 619 REMARK 465 THR D 620 REMARK 465 ASN D 621 REMARK 465 PRO D 622 REMARK 465 GLN D 709 REMARK 465 ARG D 710 REMARK 465 ILE D 711 REMARK 465 GLN D 712 REMARK 465 TYR D 713 REMARK 465 PRO D 714 REMARK 465 ASP D 715 REMARK 465 ALA A 494 REMARK 465 ASN A 495 REMARK 465 PRO A 496 REMARK 465 THR A 620 REMARK 465 ASN A 621 REMARK 465 PRO A 622 REMARK 465 ASP A 623 REMARK 465 GLN A 709 REMARK 465 ARG A 710 REMARK 465 ILE A 711 REMARK 465 GLN A 712 REMARK 465 TYR A 713 REMARK 465 PRO A 714 REMARK 465 ASP A 715 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 989 O HOH D 991 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS D 565 0.75 -68.83 REMARK 500 ALA D 617 56.95 -97.28 REMARK 500 ARG A 567 30.25 -92.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU D 659 PRO D 660 -135.52 REMARK 500 GLU A 659 PRO A 660 -140.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE D 802 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 514 NE2 REMARK 620 2 HIS D 543 NE2 103.9 REMARK 620 3 ASP D 544 OD2 93.3 88.0 REMARK 620 4 ASP D 648 OD1 81.4 85.1 170.0 REMARK 620 5 HOH D 965 O 158.5 96.9 92.9 95.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE D 801 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 544 OD1 REMARK 620 2 HIS D 580 NE2 89.9 REMARK 620 3 HIS D 604 NE2 92.1 107.2 REMARK 620 4 HIS D 605 NE2 174.7 89.1 83.2 REMARK 620 5 HOH D 965 O 89.9 160.6 92.2 92.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 801 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 514 NE2 REMARK 620 2 HIS A 543 NE2 103.4 REMARK 620 3 ASP A 544 OD2 94.0 86.3 REMARK 620 4 ASP A 648 OD1 83.4 86.2 171.2 REMARK 620 5 HOH A 955 O 156.5 100.1 88.8 97.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 802 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 544 OD1 REMARK 620 2 HIS A 580 NE2 87.8 REMARK 620 3 HIS A 604 NE2 90.4 107.0 REMARK 620 4 HIS A 605 NE2 173.1 89.9 84.1 REMARK 620 5 HOH A 955 O 86.4 156.9 95.5 98.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE D 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE D 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 802 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4S1B RELATED DB: PDB DBREF 4S1C D 494 715 UNP Q8Y746 Q8Y746_LISMO 494 715 DBREF 4S1C A 494 715 UNP Q8Y746 Q8Y746_LISMO 494 715 SEQRES 1 D 222 ALA ASN PRO ASN HIS PRO LEU LEU LYS LYS ILE LEU MET SEQRES 2 D 222 LYS ALA PRO GLY THR TYR HIS HIS SER MET MET VAL ALA SEQRES 3 D 222 ASN LEU ALA GLU ALA CYS ALA ASP LYS ILE GLY ALA ASN SEQRES 4 D 222 SER LEU LEU VAL ARG VAL GLY CYS PHE TYR HIS ASP ILE SEQRES 5 D 222 GLY LYS THR LEU ARG PRO PRO TYR PHE VAL GLU ASN GLN SEQRES 6 D 222 LEU GLN GLY ILE ASN PRO HIS ASP ARG LEU THR PRO GLU SEQRES 7 D 222 GLN SER ARG ASP ILE ILE LEU SER HIS THR LYS ASP GLY SEQRES 8 D 222 ALA GLU ILE LEU LYS GLU ASN HIS MET PRO GLN PRO ILE SEQRES 9 D 222 ILE ASP ILE ALA LEU GLN HIS HIS GLY THR THR LEU LEU SEQRES 10 D 222 LYS TYR PHE TYR PHE LYS ALA LYS GLU THR ASN PRO ASP SEQRES 11 D 222 VAL LYS GLU ALA ASP TYR ARG TYR SER GLY PRO LYS PRO SEQRES 12 D 222 GLN THR LYS GLU ILE ALA ILE ILE ASN ILE SER ASP SER SEQRES 13 D 222 VAL GLU ALA ALA VAL ARG SER SER THR GLU PRO THR MET SEQRES 14 D 222 ALA LYS ILE THR GLU ILE ILE ASP GLY ILE ILE LYS ASP SEQRES 15 D 222 ARG PHE LEU ASP GLY GLN PHE THR GLU CYS ASP ILE THR SEQRES 16 D 222 ILE GLN GLU ILE LYS ILE ILE ARG ASP THR LEU ILE ALA SEQRES 17 D 222 THR LEU ASN GLY ILE TYR HIS GLN ARG ILE GLN TYR PRO SEQRES 18 D 222 ASP SEQRES 1 A 222 ALA ASN PRO ASN HIS PRO LEU LEU LYS LYS ILE LEU MET SEQRES 2 A 222 LYS ALA PRO GLY THR TYR HIS HIS SER MET MET VAL ALA SEQRES 3 A 222 ASN LEU ALA GLU ALA CYS ALA ASP LYS ILE GLY ALA ASN SEQRES 4 A 222 SER LEU LEU VAL ARG VAL GLY CYS PHE TYR HIS ASP ILE SEQRES 5 A 222 GLY LYS THR LEU ARG PRO PRO TYR PHE VAL GLU ASN GLN SEQRES 6 A 222 LEU GLN GLY ILE ASN PRO HIS ASP ARG LEU THR PRO GLU SEQRES 7 A 222 GLN SER ARG ASP ILE ILE LEU SER HIS THR LYS ASP GLY SEQRES 8 A 222 ALA GLU ILE LEU LYS GLU ASN HIS MET PRO GLN PRO ILE SEQRES 9 A 222 ILE ASP ILE ALA LEU GLN HIS HIS GLY THR THR LEU LEU SEQRES 10 A 222 LYS TYR PHE TYR PHE LYS ALA LYS GLU THR ASN PRO ASP SEQRES 11 A 222 VAL LYS GLU ALA ASP TYR ARG TYR SER GLY PRO LYS PRO SEQRES 12 A 222 GLN THR LYS GLU ILE ALA ILE ILE ASN ILE SER ASP SER SEQRES 13 A 222 VAL GLU ALA ALA VAL ARG SER SER THR GLU PRO THR MET SEQRES 14 A 222 ALA LYS ILE THR GLU ILE ILE ASP GLY ILE ILE LYS ASP SEQRES 15 A 222 ARG PHE LEU ASP GLY GLN PHE THR GLU CYS ASP ILE THR SEQRES 16 A 222 ILE GLN GLU ILE LYS ILE ILE ARG ASP THR LEU ILE ALA SEQRES 17 A 222 THR LEU ASN GLY ILE TYR HIS GLN ARG ILE GLN TYR PRO SEQRES 18 A 222 ASP HET FE D 801 1 HET FE D 802 1 HET FE A 801 1 HET FE A 802 1 HETNAM FE FE (III) ION FORMUL 3 FE 4(FE 3+) FORMUL 7 HOH *186(H2 O) HELIX 1 1 HIS D 498 ALA D 508 1 11 HELIX 2 2 ALA D 508 ILE D 529 1 22 HELIX 3 3 ASN D 532 HIS D 543 1 12 HELIX 4 4 ASP D 544 GLN D 558 5 15 HELIX 5 5 ASN D 563 LEU D 568 5 6 HELIX 6 6 THR D 569 ASN D 591 1 23 HELIX 7 7 PRO D 594 HIS D 604 1 11 HELIX 8 8 LEU D 610 PHE D 615 1 6 HELIX 9 9 LYS D 625 ARG D 630 5 6 HELIX 10 10 THR D 638 SER D 657 1 20 HELIX 11 11 THR D 661 ASP D 679 1 19 HELIX 12 12 THR D 688 HIS D 708 1 21 HELIX 13 13 HIS A 498 ALA A 508 1 11 HELIX 14 14 ALA A 508 GLY A 530 1 23 HELIX 15 15 ASN A 532 HIS A 543 1 12 HELIX 16 16 ASP A 544 GLN A 558 5 15 HELIX 17 17 ASN A 563 LEU A 568 5 6 HELIX 18 18 THR A 569 ASN A 591 1 23 HELIX 19 19 PRO A 594 HIS A 604 1 11 HELIX 20 20 LEU A 610 PHE A 615 1 6 HELIX 21 21 LYS A 625 ARG A 630 5 6 HELIX 22 22 THR A 638 SER A 656 1 19 HELIX 23 23 THR A 661 ASP A 679 1 19 HELIX 24 24 THR A 688 HIS A 708 1 21 LINK NE2 HIS D 514 FE FE D 802 1555 1555 2.28 LINK NE2 HIS D 543 FE FE D 802 1555 1555 2.28 LINK OD1 ASP D 544 FE FE D 801 1555 1555 2.30 LINK OD2 ASP D 544 FE FE D 802 1555 1555 2.18 LINK NE2 HIS D 580 FE FE D 801 1555 1555 2.25 LINK NE2 HIS D 604 FE FE D 801 1555 1555 2.30 LINK NE2 HIS D 605 FE FE D 801 1555 1555 2.23 LINK OD1 ASP D 648 FE FE D 802 1555 1555 2.05 LINK FE FE D 801 O HOH D 965 1555 1555 1.84 LINK FE FE D 802 O HOH D 965 1555 1555 2.15 LINK NE2 HIS A 514 FE FE A 801 1555 1555 2.26 LINK NE2 HIS A 543 FE FE A 801 1555 1555 2.25 LINK OD2 ASP A 544 FE FE A 801 1555 1555 2.14 LINK OD1 ASP A 544 FE FE A 802 1555 1555 2.21 LINK NE2 HIS A 580 FE FE A 802 1555 1555 2.25 LINK NE2 HIS A 604 FE FE A 802 1555 1555 2.27 LINK NE2 HIS A 605 FE FE A 802 1555 1555 2.19 LINK OD1 ASP A 648 FE FE A 801 1555 1555 2.04 LINK FE FE A 801 O HOH A 955 1555 1555 1.98 LINK FE FE A 802 O HOH A 955 1555 1555 1.93 CISPEP 1 GLY D 633 PRO D 634 0 3.81 CISPEP 2 THR D 658 GLU D 659 0 -15.08 CISPEP 3 GLY A 633 PRO A 634 0 6.72 CISPEP 4 THR A 658 GLU A 659 0 -19.46 SITE 1 AC1 6 ASP D 544 HIS D 580 HIS D 604 HIS D 605 SITE 2 AC1 6 FE D 802 HOH D 965 SITE 1 AC2 6 HIS D 514 HIS D 543 ASP D 544 ASP D 648 SITE 2 AC2 6 FE D 801 HOH D 965 SITE 1 AC3 6 HIS A 514 HIS A 543 ASP A 544 ASP A 648 SITE 2 AC3 6 FE A 802 HOH A 955 SITE 1 AC4 6 ASP A 544 HIS A 580 HIS A 604 HIS A 605 SITE 2 AC4 6 FE A 801 HOH A 955 CRYST1 116.562 116.562 91.783 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008579 0.004953 0.000000 0.00000 SCALE2 0.000000 0.009906 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010895 0.00000