HEADER VIRAL PROTEIN 14-JAN-15 4S1K TITLE STRUCTURE OF URANOTAENIA SAPPHIRINA CYPOVIRUS (CPV17) POLYHEDRIN AT TITLE 2 100 K COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYHEDRIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: URANOTAENIA SAPPHIRINA CYPOVIRUS; SOURCE 3 ORGANISM_TAXID: 311554 KEYWDS POLYHEDRIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.M.GINN,M.MESSERSCHMIDT,X.JI,H.ZHANG,D.AXFORD,R.J.GILDEA,G.WINTER, AUTHOR 2 A.S.BREWSTER,J.HATTNE,A.WAGNER,J.M.GRIMES,G.EVANS,N.K.SAUTER, AUTHOR 3 G.SUTTON,D.I.STUART REVDAT 2 28-FEB-24 4S1K 1 REMARK LINK REVDAT 1 25-MAR-15 4S1K 0 JRNL AUTH H.M.GINN,M.MESSERSCHMIDT,X.JI,H.ZHANG,D.AXFORD,R.J.GILDEA, JRNL AUTH 2 G.WINTER,A.S.BREWSTER,J.HATTNE,A.WAGNER,J.M.GRIMES,G.EVANS, JRNL AUTH 3 N.K.SAUTER,G.SUTTON,D.I.STUART JRNL TITL STRUCTURE OF CPV17 POLYHEDRIN DETERMINED BY THE IMPROVED JRNL TITL 2 ANALYSIS OF SERIAL FEMTOSECOND CRYSTALLOGRAPHIC DATA. JRNL REF NAT COMMUN V. 6 6435 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 25751308 JRNL DOI 10.1038/NCOMMS7435 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.200 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 9376 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 504 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 676 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 32 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1881 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.478 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.211 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.168 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.984 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1996 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1832 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2715 ; 1.675 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4214 ; 0.854 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 242 ; 6.607 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;33.316 ;23.636 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 331 ;14.402 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;17.454 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 282 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2286 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 482 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 962 ; 1.416 ; 2.120 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 961 ; 1.412 ; 2.120 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1206 ; 2.270 ; 3.174 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1207 ; 2.269 ; 3.174 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1034 ; 2.153 ; 2.444 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1035 ; 2.152 ; 2.446 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1510 ; 3.332 ; 3.579 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2325 ; 5.532 ;18.177 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2295 ; 5.356 ;18.042 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4S1K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000088063. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 768 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9376 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 74.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 74.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS FORMED NATURALLY WITHIN THE REMARK 280 CYTOPLASM AND WERE PURIFIED FROM CELLS, PH 7.5, IN VIVO, REMARK 280 TEMPERATURE 301K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 52.43950 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 52.43950 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 52.43950 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 52.43950 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 52.43950 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 52.43950 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 52.43950 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 52.43950 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 52.43950 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 52.43950 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 52.43950 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 52.43950 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 52.43950 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 52.43950 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 52.43950 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 52.43950 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 52.43950 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 52.43950 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 52.43950 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 52.43950 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 52.43950 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 52.43950 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 52.43950 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 52.43950 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 52.43950 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 52.43950 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 52.43950 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 52.43950 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 52.43950 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 52.43950 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 52.43950 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 52.43950 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 52.43950 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 52.43950 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 52.43950 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 52.43950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 104.87900 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 104.87900 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 104.87900 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 104.87900 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 532 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C HIS A 237 O HOH A 542 1.66 REMARK 500 O HOH A 467 O HOH A 508 2.04 REMARK 500 O HOH A 531 O HOH A 539 2.05 REMARK 500 O HOH A 462 O HOH A 531 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 403 O HOH A 525 21445 1.94 REMARK 500 O HOH A 526 O HOH A 526 4566 1.98 REMARK 500 O HOH A 480 O HOH A 528 4566 2.01 REMARK 500 O HOH A 478 O HOH A 523 19555 2.04 REMARK 500 O HOH A 432 O HOH A 442 8656 2.04 REMARK 500 O HOH A 468 O HOH A 525 8656 2.06 REMARK 500 O ALA A 190 O HOH A 459 24555 2.15 REMARK 500 O HOH A 401 O HOH A 523 24555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 3 -76.04 -5.71 REMARK 500 LEU A 135 52.43 -116.96 REMARK 500 ARG A 146 -116.57 57.12 REMARK 500 CYS A 159 23.91 -147.51 REMARK 500 HIS A 221 -70.86 -131.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 301 O2G REMARK 620 2 ATP A 301 O2A 86.1 REMARK 620 3 ATP A 301 O2B 72.8 63.9 REMARK 620 4 HOH A 471 O 86.5 134.3 70.8 REMARK 620 5 HOH A 527 O 83.6 77.2 135.2 146.1 REMARK 620 6 HOH A 533 O 150.7 67.1 103.4 120.4 79.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4S1L RELATED DB: PDB DBREF 4S1K A 1 237 UNP Q5EK29 Q5EK29_9REOV 1 237 SEQRES 1 A 237 MET ALA ASP LEU SER LEU ALA ARG GLN ARG LEU THR ASP SEQRES 2 A 237 GLU SER VAL ASN GLU ALA PRO ARG ALA TYR ASP ALA ASN SEQRES 3 A 237 MET GLU LEU VAL ILE VAL ALA GLU TYR PRO GLU GLY GLN SEQRES 4 A 237 CYS LYS SER PHE HIS PHE ALA ASN PRO PHE VAL ILE LYS SEQRES 5 A 237 GLY VAL ILE LYS SER SER GLU LEU MET TRP ASP ILE ASP SEQRES 6 A 237 ASN GLY HIS GLN MET SER GLU TYR GLU LEU GLN ARG SER SEQRES 7 A 237 ILE ASN GLY TYR ALA ALA SER HIS SER ASN MET ARG GLN SEQRES 8 A 237 ARG SER ALA ILE ASN ARG ILE PRO LYS LYS LEU SER PHE SEQRES 9 A 237 TYR LEU ARG GLY ASN VAL ASP TRP ASN LYS ALA SER ILE SEQRES 10 A 237 ASP ILE ARG GLY PRO THR GLY LEU SER MET ARG GLN THR SEQRES 11 A 237 GLU GLU TYR SER LEU ASP ARG ILE ARG PRO PRO CYS SER SEQRES 12 A 237 TYR LYS ARG ASN LYS PHE VAL ASP LEU PRO SER CYS GLY SEQRES 13 A 237 GLY ARG CYS GLU LYS ALA TRP TYR VAL GLU LEU ASP GLY SEQRES 14 A 237 ARG PRO VAL SER ILE ALA VAL ILE VAL PRO ARG ASN MET SEQRES 15 A 237 HIS ASN GLY ILE ASN LEU TYR ALA GLY PRO LEU LEU GLY SEQRES 16 A 237 ASN VAL ILE GLU GLY LEU ASP THR VAL PRO GLU CYS THR SEQRES 17 A 237 GLN TRP PHE ASP ASN ALA PRO GLU LEU TYR ALA TYR HIS SEQRES 18 A 237 ALA SER ASN TYR GLY MET THR MET LEU ASP GLN PHE SER SEQRES 19 A 237 VAL ILE HIS HET ATP A 301 31 HET MG A 302 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 MG MG 2+ FORMUL 4 HOH *146(H2 O) HELIX 1 1 ALA A 2 ALA A 19 1 18 HELIX 2 2 PRO A 20 ALA A 22 5 3 HELIX 3 3 LYS A 56 MET A 61 1 6 HELIX 4 4 SER A 71 ALA A 84 1 14 HELIX 5 5 ALA A 94 ILE A 98 5 5 HELIX 6 6 GLU A 132 ASP A 136 5 5 HELIX 7 7 PRO A 140 TYR A 144 5 5 HELIX 8 8 LYS A 145 PHE A 149 5 5 HELIX 9 9 PRO A 192 LEU A 201 1 10 HELIX 10 10 ASN A 213 HIS A 221 1 9 HELIX 11 11 HIS A 221 GLY A 226 1 6 SHEET 1 A 6 VAL A 150 LEU A 152 0 SHEET 2 A 6 GLU A 160 GLU A 166 -1 O ALA A 162 N VAL A 150 SHEET 3 A 6 LYS A 101 ARG A 107 -1 N LEU A 102 O VAL A 165 SHEET 4 A 6 MET A 27 GLU A 34 -1 N VAL A 30 O TYR A 105 SHEET 5 A 6 CYS A 40 ASN A 47 -1 O LYS A 41 N ALA A 33 SHEET 6 A 6 CYS A 207 PHE A 211 -1 O GLN A 209 N SER A 42 SHEET 1 B 3 VAL A 50 ILE A 55 0 SHEET 2 B 3 SER A 173 PRO A 179 -1 O VAL A 178 N ILE A 51 SHEET 3 B 3 SER A 116 ARG A 120 -1 N ASP A 118 O ALA A 175 SHEET 1 C 2 ILE A 64 ASP A 65 0 SHEET 2 C 2 HIS A 68 GLN A 69 -1 O HIS A 68 N ASP A 65 SHEET 1 D 2 MET A 229 LEU A 230 0 SHEET 2 D 2 ILE A 236 HIS A 237 -1 O HIS A 237 N MET A 229 LINK O2G ATP A 301 MG MG A 302 1555 1555 2.17 LINK O2A ATP A 301 MG MG A 302 1555 1555 2.55 LINK O2B ATP A 301 MG MG A 302 1555 1555 2.56 LINK MG MG A 302 O HOH A 471 1555 1555 2.77 LINK MG MG A 302 O HOH A 527 1555 1555 2.63 LINK MG MG A 302 O HOH A 533 1555 1555 2.48 SITE 1 AC1 16 ARG A 8 ASP A 151 LEU A 152 PRO A 153 SITE 2 AC1 16 SER A 154 CYS A 155 GLY A 156 GLY A 157 SITE 3 AC1 16 ARG A 158 LEU A 230 SER A 234 MG A 302 SITE 4 AC1 16 HOH A 433 HOH A 471 HOH A 533 HOH A 534 SITE 1 AC2 4 ATP A 301 HOH A 471 HOH A 527 HOH A 533 CRYST1 104.879 104.879 104.879 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009535 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009535 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009535 0.00000