HEADER VIRAL PROTEIN/IMMUNE SYSTEM 14-JAN-15 4S1Q TITLE CRYSTAL STRUCTURE OF A VRC01-LINEAGE ANTIBODY, 45-VRC01.H03+06.D- TITLE 2 001739, IN COMPLEX WITH CLADE A/E HIV-1 GP120 CORE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 GP120 CORE; COMPND 3 CHAIN: G; COMPND 4 FRAGMENT: RESIDUE 44-492; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: FAB OF VRC01-LINEAGE ANTIBODY,45-VRC01.H03+06.D-001739 COMPND 9 HEAVY CHAIN; COMPND 10 CHAIN: H; COMPND 11 FRAGMENT: FAB OF VRC01-LINEAGE ANTIBODY,45-VRC01.H03+06.D-001739 COMPND 12 HEAVY CHAIN; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: FAB OF VRC01 LIGHT CHAIN; COMPND 16 CHAIN: L; COMPND 17 FRAGMENT: FAB OF VRC01 LIGHT CHAIN; COMPND 18 ENGINEERED: YES; COMPND 19 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_COMMON: HIV-1; SOURCE 4 ORGANISM_TAXID: 11676; SOURCE 5 STRAIN: CLADE A/E 93TH057; SOURCE 6 GENE: HIV-1 ENV; SOURCE 7 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 8 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM_CELL_LINE: HEK293F; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PVRC8400; SOURCE 13 MOL_ID: 2; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 GENE: HEAVY CHAIN; SOURCE 18 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 19 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 21 EXPRESSION_SYSTEM_CELL_LINE: HEK293F; SOURCE 22 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 23 EXPRESSION_SYSTEM_PLASMID: PVRC8400; SOURCE 24 MOL_ID: 3; SOURCE 25 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 26 ORGANISM_COMMON: HUMAN; SOURCE 27 ORGANISM_TAXID: 9606; SOURCE 28 GENE: LIGHT CHAIN; SOURCE 29 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 30 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 31 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 32 EXPRESSION_SYSTEM_CELL_LINE: HEK293F; SOURCE 33 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 34 EXPRESSION_SYSTEM_PLASMID: PVRC8400 KEYWDS HIV-1, NEUTRALIZING ANTIBODIES, VRC01-LINEAGE, ANTIBODY MATURATION, KEYWDS 2 EVOLUTIONARY RATE, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.D.KWON,Y.YANG,B.ZHANG,P.D.KWONG REVDAT 7 20-NOV-24 4S1Q 1 REMARK REVDAT 6 20-SEP-23 4S1Q 1 REMARK REVDAT 5 02-JUN-21 4S1Q 1 SOURCE HETSYN REVDAT 4 29-JUL-20 4S1Q 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 27-APR-16 4S1Q 1 SOURCE REVDAT 2 06-MAY-15 4S1Q 1 JRNL REVDAT 1 22-APR-15 4S1Q 0 JRNL AUTH X.WU,Z.ZHANG,C.A.SCHRAMM,M.G.JOYCE,Y.DO KWON,T.ZHOU,Z.SHENG, JRNL AUTH 2 B.ZHANG,S.O'DELL,K.MCKEE,I.S.GEORGIEV,G.Y.CHUANG,N.S.LONGO, JRNL AUTH 3 R.M.LYNCH,K.O.SAUNDERS,C.SOTO,S.SRIVATSAN,Y.YANG,R.T.BAILER, JRNL AUTH 4 M.K.LOUDER,J.C.MULLIKIN,M.CONNORS,P.D.KWONG,J.R.MASCOLA, JRNL AUTH 5 L.SHAPIRO JRNL TITL MATURATION AND DIVERSITY OF THE VRC01-ANTIBODY LINEAGE OVER JRNL TITL 2 15 YEARS OF CHRONIC HIV-1 INFECTION. JRNL REF CELL(CAMBRIDGE,MASS.) V. 161 470 2015 JRNL REFN ISSN 0092-8674 JRNL PMID 25865483 JRNL DOI 10.1016/J.CELL.2015.03.004 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1839) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 3 NUMBER OF REFLECTIONS : 36988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1878 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.3608 - 5.6276 0.97 3092 167 0.2144 0.2427 REMARK 3 2 5.6276 - 4.4685 0.98 2990 161 0.1746 0.2036 REMARK 3 3 4.4685 - 3.9041 0.98 2966 159 0.1878 0.2140 REMARK 3 4 3.9041 - 3.5474 0.98 2938 158 0.2196 0.2569 REMARK 3 5 3.5474 - 3.2932 0.98 2905 156 0.2264 0.2804 REMARK 3 6 3.2932 - 3.0992 0.97 2895 156 0.2491 0.3018 REMARK 3 7 3.0992 - 2.9440 0.96 2834 155 0.2514 0.2940 REMARK 3 8 2.9440 - 2.8159 0.94 2772 145 0.2514 0.2919 REMARK 3 9 2.8159 - 2.7075 0.91 2698 147 0.2545 0.3511 REMARK 3 10 2.7075 - 2.6141 0.86 2537 136 0.2776 0.3487 REMARK 3 11 2.6141 - 2.5323 0.82 2398 123 0.2816 0.3430 REMARK 3 12 2.5323 - 2.4600 0.75 2210 117 0.2866 0.3559 REMARK 3 13 2.4600 - 2.3952 0.64 1875 98 0.2809 0.3387 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6375 REMARK 3 ANGLE : 0.956 8688 REMARK 3 CHIRALITY : 0.040 984 REMARK 3 PLANARITY : 0.004 1110 REMARK 3 DIHEDRAL : 12.314 2329 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4S1Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000088069. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39180 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : 0.11300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : 0.51500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.630 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 3SE8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000, 0.1M TRIS-HCL 8.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.08950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 97.10700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.46250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 97.10700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.08950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.46250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY G 318 REMARK 465 GLY G 319 REMARK 465 SER G 320 REMARK 465 GLY G 321 REMARK 465 SER G 322 REMARK 465 GLY G 323 REMARK 465 GLY G 324 REMARK 465 GLU G 405 REMARK 465 THR G 406 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 CYS L 216 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN G 276 C1 NAG G 505 1.53 REMARK 500 HD21 ASN G 386 O HOH G 635 1.56 REMARK 500 O HOH G 638 O HOH G 655 1.91 REMARK 500 ND2 ASN G 276 O5 NAG G 505 2.03 REMARK 500 O HOH H 331 O HOH H 337 2.05 REMARK 500 ND2 ASN G 241 O5 NAG G 503 2.06 REMARK 500 O HOH L 312 O HOH L 316 2.06 REMARK 500 OE2 GLU L 163 O HOH L 325 2.07 REMARK 500 O PRO L 40 O HOH L 311 2.08 REMARK 500 O SER L 133 O HOH L 318 2.08 REMARK 500 O HOH H 322 O HOH H 323 2.10 REMARK 500 OD1 ASN G 276 O HOH G 628 2.12 REMARK 500 O HOH G 610 O HOH G 618 2.12 REMARK 500 O HOH G 619 O HOH G 639 2.13 REMARK 500 O HOH H 306 O HOH H 317 2.14 REMARK 500 ND2 ASN G 88 O5 NAG G 501 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN G 80 76.89 -114.45 REMARK 500 ASN G 88 62.59 38.52 REMARK 500 ASP G 211 104.23 -166.72 REMARK 500 GLN G 258 -65.21 65.72 REMARK 500 GLU G 268 -94.86 -113.99 REMARK 500 ASN G 276 100.37 -168.78 REMARK 500 LYS G 408 -119.75 -128.59 REMARK 500 CYS G 410 71.82 -155.00 REMARK 500 ILE G 439 150.27 -48.88 REMARK 500 ASP H 76E 41.71 -89.42 REMARK 500 ASP H 144 74.15 55.15 REMARK 500 THR H 191 -70.00 -118.40 REMARK 500 GLN L 27 -169.28 -104.69 REMARK 500 ARG L 66 34.77 -96.58 REMARK 500 TYR L 91 -127.60 58.42 REMARK 500 ASN L 140 77.30 58.51 REMARK 500 ASN L 212 -168.58 -115.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4S1R RELATED DB: PDB REMARK 900 RELATED ID: 4S1S RELATED DB: PDB DBREF 4S1Q G 44 492 PDB 4S1Q 4S1Q 44 492 DBREF 4S1Q H 1 216 PDB 4S1Q 4S1Q 1 216 DBREF 4S1Q L 1 216 PDB 4S1Q 4S1Q 1 216 SEQRES 1 G 353 VAL TRP LYS ASP ALA ASP THR THR LEU PHE CYS ALA SER SEQRES 2 G 353 ASP ALA LYS ALA HIS GLU THR GLU VAL HIS ASN VAL TRP SEQRES 3 G 353 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 G 353 GLU ILE HIS LEU GLU ASN VAL THR GLU ASN PHE ASN MET SEQRES 5 G 353 TRP LYS ASN ASN MET VAL GLU GLN MET GLN GLU ASP VAL SEQRES 6 G 353 ILE SER LEU TRP ASP GLN SER LEU GLN PRO CYS VAL LYS SEQRES 7 G 353 LEU THR GLY GLY SER VAL ILE LYS GLN ALA CYS PRO LYS SEQRES 8 G 353 ILE SER PHE ASP PRO ILE PRO ILE HIS TYR CYS THR PRO SEQRES 9 G 353 ALA GLY TYR VAL ILE LEU LYS CYS ASN ASP LYS ASN PHE SEQRES 10 G 353 ASN GLY THR GLY PRO CYS LYS ASN VAL SER SER VAL GLN SEQRES 11 G 353 CYS THR HIS GLY ILE LYS PRO VAL VAL SER THR GLN LEU SEQRES 12 G 353 LEU LEU ASN GLY SER LEU ALA GLU GLU GLU ILE ILE ILE SEQRES 13 G 353 ARG SER GLU ASN LEU THR ASN ASN ALA LYS THR ILE ILE SEQRES 14 G 353 VAL HIS LEU ASN LYS SER VAL GLU ILE ASN CYS THR ARG SEQRES 15 G 353 PRO SER ASN GLY GLY SER GLY SER GLY GLY ASP ILE ARG SEQRES 16 G 353 LYS ALA TYR CYS GLU ILE ASN GLY THR LYS TRP ASN LYS SEQRES 17 G 353 VAL LEU LYS GLN VAL THR GLU LYS LEU LYS GLU HIS PHE SEQRES 18 G 353 ASN ASN LYS THR ILE ILE PHE GLN PRO PRO SER GLY GLY SEQRES 19 G 353 ASP LEU GLU ILE THR MET HIS HIS PHE ASN CYS ARG GLY SEQRES 20 G 353 GLU PHE PHE TYR CYS ASN THR THR GLN LEU PHE ASN ASN SEQRES 21 G 353 THR CYS ILE GLY ASN GLU THR MET LYS GLY CYS ASN GLY SEQRES 22 G 353 THR ILE THR LEU PRO CYS LYS ILE LYS GLN ILE ILE ASN SEQRES 23 G 353 MET TRP GLN GLY THR GLY GLN ALA MET TYR ALA PRO PRO SEQRES 24 G 353 ILE ASP GLY LYS ILE ASN CYS VAL SER ASN ILE THR GLY SEQRES 25 G 353 ILE LEU LEU THR ARG ASP GLY GLY ALA ASN ASN THR SER SEQRES 26 G 353 ASN GLU THR PHE ARG PRO GLY GLY GLY ASN ILE LYS ASP SEQRES 27 G 353 ASN TRP ARG SER GLU LEU TYR LYS TYR LYS VAL VAL GLN SEQRES 28 G 353 ILE GLU SEQRES 1 H 234 GLU VAL ARG LEU ILE GLN SER GLY ALA VAL MET ARG LYS SEQRES 2 H 234 PRO GLY SER SER VAL LYS ILE SER CYS ARG ALA SER GLY SEQRES 3 H 234 TYR ASN PHE ARG GLU TYR SER ILE HIS TRP VAL ARG LEU SEQRES 4 H 234 ILE PRO GLY ARG GLY LEU GLU TRP ILE GLY TRP ILE LYS SEQRES 5 H 234 GLY MET TRP GLY ALA VAL SER TYR ALA ARG GLN LEU GLN SEQRES 6 H 234 GLY ARG VAL SER MET THR ARG GLN LEU SER GLN ASP PRO SEQRES 7 H 234 ASP ASP PRO ASP TRP GLY ILE ALA TYR LEU GLU PHE SER SEQRES 8 H 234 GLY LEU THR SER GLY ASP THR ALA GLU TYR PHE CYS VAL SEQRES 9 H 234 ARG LYS GLY PRO SER CYS PRO HIS CYS GLY ASP PHE HIS SEQRES 10 H 234 TRP GLN HIS TRP GLY GLN GLY THR ALA VAL VAL VAL SER SEQRES 11 H 234 ALA ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 12 H 234 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 13 H 234 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 14 H 234 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 15 H 234 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 16 H 234 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 17 H 234 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 18 H 234 ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS SEQRES 1 L 210 GLU ILE VAL LEU THR GLN SER PRO GLY THR LEU SER LEU SEQRES 2 L 210 SER PRO GLY GLU THR ALA ILE ILE SER CYS ARG THR SER SEQRES 3 L 210 GLN TYR GLY SER LEU ALA TRP TYR GLN GLN ARG PRO GLY SEQRES 4 L 210 GLN ALA PRO ARG LEU VAL ILE TYR SER GLY SER THR ARG SEQRES 5 L 210 ALA ALA GLY ILE PRO ASP ARG PHE SER GLY SER ARG TRP SEQRES 6 L 210 GLY PRO ASP TYR THR LEU THR ILE SER ASN LEU GLU SER SEQRES 7 L 210 GLY ASP PHE GLY VAL TYR TYR CYS GLN GLN TYR GLU PHE SEQRES 8 L 210 PHE GLY GLN GLY THR LYS VAL GLN VAL ASP ILE LYS ARG SEQRES 9 L 210 THR VAL ALA ALA PRO SER VAL PHE ILE PHE PRO PRO SER SEQRES 10 L 210 ASP GLU GLN LEU LYS SER GLY THR ALA SER VAL VAL CYS SEQRES 11 L 210 LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN SEQRES 12 L 210 TRP LYS VAL ASP ASN ALA LEU GLN SER GLY ASN SER GLN SEQRES 13 L 210 GLU SER VAL THR GLU GLN ASP SER LYS ASP SER THR TYR SEQRES 14 L 210 SER LEU SER SER THR LEU THR LEU SER LYS ALA ASP TYR SEQRES 15 L 210 GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL THR HIS GLN SEQRES 16 L 210 GLY LEU SER SER PRO VAL THR LYS SER PHE ASN ARG GLY SEQRES 17 L 210 GLU CYS MODRES 4S1Q ASN G 448 ASN GLYCOSYLATION SITE MODRES 4S1Q ASN G 295 ASN GLYCOSYLATION SITE MODRES 4S1Q ASN G 276 ASN GLYCOSYLATION SITE MODRES 4S1Q ASN G 88 ASN GLYCOSYLATION SITE MODRES 4S1Q ASN G 386 ASN GLYCOSYLATION SITE MODRES 4S1Q ASN G 234 ASN GLYCOSYLATION SITE MODRES 4S1Q ASN G 262 ASN GLYCOSYLATION SITE MODRES 4S1Q ASN G 289 ASN GLYCOSYLATION SITE MODRES 4S1Q ASN G 392 ASN GLYCOSYLATION SITE MODRES 4S1Q ASN G 241 ASN GLYCOSYLATION SITE MODRES 4S1Q ASN G 334 ASN GLYCOSYLATION SITE HET NAG G 501 14 HET NAG G 502 27 HET NAG G 503 27 HET NAG G 504 27 HET NAG G 505 14 HET NAG G 506 26 HET NAG G 507 25 HET NAG G 508 14 HET NAG G 509 25 HET NAG G 510 25 HET NAG G 511 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG 11(C8 H15 N O6) FORMUL 15 HOH *126(H2 O) HELIX 1 1 GLU G 64 CYS G 74 1 11 HELIX 2 2 TRP G 96 ASN G 98 5 3 HELIX 3 3 ASN G 99 LEU G 116 1 18 HELIX 4 4 GLY G 335 PHE G 353 1 19 HELIX 5 5 ASP G 368 MET G 373 1 6 HELIX 6 6 THR G 387 GLY G 397 5 11 HELIX 7 7 ILE G 475 TYR G 484 1 10 HELIX 8 8 ASN H 28 GLU H 31 5 4 HELIX 9 9 ARG H 61 GLN H 64 5 4 HELIX 10 10 THR H 83 THR H 87 5 5 HELIX 11 11 SER H 187 LEU H 189 5 3 HELIX 12 12 LYS H 201 ASN H 204 5 4 HELIX 13 13 GLU L 79 PHE L 83 5 5 HELIX 14 14 SER L 123 LYS L 128 1 6 HELIX 15 15 LYS L 185 HIS L 191 1 7 SHEET 1 A 5 TRP G 45 ASP G 47 0 SHEET 2 A 5 TYR G 486 ILE G 491 -1 O GLN G 490 N LYS G 46 SHEET 3 A 5 TYR G 223 CYS G 228 -1 N LEU G 226 O LYS G 487 SHEET 4 A 5 VAL G 242 VAL G 245 -1 O SER G 243 N LYS G 227 SHEET 5 A 5 ILE G 84 HIS G 85 -1 N ILE G 84 O SER G 244 SHEET 1 B 3 VAL G 75 PRO G 76 0 SHEET 2 B 3 PHE G 53 SER G 56 1 N CYS G 54 O VAL G 75 SHEET 3 B 3 HIS G 216 CYS G 218 -1 O CYS G 218 N PHE G 53 SHEET 1 C 2 GLU G 91 ASN G 94 0 SHEET 2 C 2 THR G 236 CYS G 239 -1 O GLY G 237 N PHE G 93 SHEET 1 D 4 SER G 199 LYS G 202 0 SHEET 2 D 4 VAL G 120 THR G 123 -1 N THR G 123 O SER G 199 SHEET 3 D 4 GLN G 432 MET G 434 -1 O MET G 434 N VAL G 120 SHEET 4 D 4 ILE G 423 ASN G 425 -1 N ILE G 424 O ALA G 433 SHEET 1 E 5 LEU G 259 LEU G 261 0 SHEET 2 E 5 ILE G 443 ARG G 456 -1 O THR G 450 N LEU G 260 SHEET 3 E 5 ILE G 284 ARG G 298 -1 N ARG G 298 O ILE G 443 SHEET 4 E 5 ASN G 465 PRO G 470 0 SHEET 5 E 5 THR G 358 PHE G 361 1 N ILE G 360 O GLU G 466 SHEET 1 F 7 ILE G 271 ARG G 273 0 SHEET 2 F 7 ILE G 284 ARG G 298 -1 O HIS G 287 N ILE G 271 SHEET 3 F 7 ILE G 443 ARG G 456 -1 O ILE G 443 N ARG G 298 SHEET 4 F 7 LYS G 328 ASN G 334 0 SHEET 5 F 7 THR G 413 LYS G 421 -1 O ILE G 414 N ILE G 333 SHEET 6 F 7 GLU G 381 CYS G 385 -1 N PHE G 382 O LYS G 421 SHEET 7 F 7 HIS G 374 CYS G 378 -1 N PHE G 376 O PHE G 383 SHEET 1 G 4 ARG H 3 GLN H 6 0 SHEET 2 G 4 VAL H 18 SER H 25 -1 O ARG H 23 N ILE H 5 SHEET 3 G 4 TRP H 76F PHE H 82 -1 O LEU H 80 N ILE H 20 SHEET 4 G 4 VAL H 67 LEU H 73 -1 N THR H 70 O TYR H 79 SHEET 1 H 6 VAL H 10 ARG H 12 0 SHEET 2 H 6 THR H 107 VAL H 111 1 O VAL H 110 N ARG H 12 SHEET 3 H 6 ALA H 88 LYS H 95 -1 N TYR H 90 O THR H 107 SHEET 4 H 6 SER H 33 ILE H 40 -1 N VAL H 37 O PHE H 91 SHEET 5 H 6 GLY H 44 LYS H 52 -1 O ILE H 51 N ILE H 34 SHEET 6 H 6 VAL H 57 TYR H 59 -1 O SER H 58 N TRP H 50 SHEET 1 I 4 VAL H 10 ARG H 12 0 SHEET 2 I 4 THR H 107 VAL H 111 1 O VAL H 110 N ARG H 12 SHEET 3 I 4 ALA H 88 LYS H 95 -1 N TYR H 90 O THR H 107 SHEET 4 I 4 TRP H 100F TRP H 103 -1 O HIS H 102 N ARG H 94 SHEET 1 J 4 SER H 120 LEU H 124 0 SHEET 2 J 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 J 4 TYR H 176 PRO H 185 -1 O VAL H 182 N LEU H 138 SHEET 4 J 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 K 4 SER H 120 LEU H 124 0 SHEET 2 K 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 K 4 TYR H 176 PRO H 185 -1 O VAL H 182 N LEU H 138 SHEET 4 K 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 L 3 THR H 151 TRP H 154 0 SHEET 2 L 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 L 3 THR H 205 LYS H 210 -1 O LYS H 209 N CYS H 196 SHEET 1 M 4 LEU L 4 SER L 7 0 SHEET 2 M 4 ALA L 19 THR L 25 -1 O SER L 22 N SER L 7 SHEET 3 M 4 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 M 4 PHE L 62 SER L 65 -1 N SER L 63 O THR L 74 SHEET 1 N 6 THR L 10 LEU L 13 0 SHEET 2 N 6 THR L 102 VAL L 106 1 O LYS L 103 N LEU L 11 SHEET 3 N 6 GLY L 84 GLN L 90 -1 N GLY L 84 O VAL L 104 SHEET 4 N 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 N 6 ARG L 45 TYR L 49 -1 O VAL L 47 N TRP L 35 SHEET 6 N 6 THR L 53 ARG L 54 -1 O THR L 53 N TYR L 49 SHEET 1 O 4 THR L 10 LEU L 13 0 SHEET 2 O 4 THR L 102 VAL L 106 1 O LYS L 103 N LEU L 11 SHEET 3 O 4 GLY L 84 GLN L 90 -1 N GLY L 84 O VAL L 104 SHEET 4 O 4 PHE L 97 PHE L 98 -1 O PHE L 97 N GLN L 90 SHEET 1 P 4 SER L 116 PHE L 120 0 SHEET 2 P 4 THR L 131 PHE L 141 -1 O VAL L 135 N PHE L 120 SHEET 3 P 4 TYR L 175 SER L 184 -1 O LEU L 181 N VAL L 134 SHEET 4 P 4 SER L 161 VAL L 165 -1 N SER L 164 O SER L 178 SHEET 1 Q 4 ALA L 155 LEU L 156 0 SHEET 2 Q 4 LYS L 147 VAL L 152 -1 N VAL L 152 O ALA L 155 SHEET 3 Q 4 TYR L 194 THR L 199 -1 O GLU L 197 N GLN L 149 SHEET 4 Q 4 VAL L 207 PHE L 211 -1 O VAL L 207 N VAL L 198 SSBOND 1 CYS G 54 CYS G 74 1555 1555 2.04 SSBOND 2 CYS G 119 CYS G 205 1555 1555 2.03 SSBOND 3 CYS G 218 CYS G 247 1555 1555 2.03 SSBOND 4 CYS G 228 CYS G 239 1555 1555 2.03 SSBOND 5 CYS G 296 CYS G 331 1555 1555 2.03 SSBOND 6 CYS G 378 CYS G 445 1555 1555 2.03 SSBOND 7 CYS G 385 CYS G 418 1555 1555 2.03 SSBOND 8 CYS G 395 CYS G 410 1555 1555 2.04 SSBOND 9 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 10 CYS H 98 CYS H 100A 1555 1555 2.03 SSBOND 11 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 12 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 13 CYS L 136 CYS L 196 1555 1555 2.04 LINK ND2 ASN G 88 C1 NAG G 501 1555 1555 1.43 LINK ND2 ASN G 234 C1 NAG G 502 1555 1555 1.43 LINK ND2 ASN G 241 C1 NAG G 503 1555 1555 1.44 LINK ND2 ASN G 262 C1 NAG G 504 1555 1555 1.43 LINK ND2 ASN G 276 C1 NAG G 505 1555 1555 1.43 LINK ND2 ASN G 289 C1 NAG G 506 1555 1555 1.43 LINK ND2 ASN G 295 C1 NAG G 507 1555 1555 1.43 LINK ND2 ASN G 334 C1 NAG G 508 1555 1555 1.44 LINK ND2 ASN G 386 C1 NAG G 509 1555 1555 1.43 LINK ND2 ASN G 392 C1 NAG G 510 1555 1555 1.43 LINK ND2 ASN G 448 C1 NAG G 511 1555 1555 1.42 CISPEP 1 PHE H 146 PRO H 147 0 -7.93 CISPEP 2 GLU H 148 PRO H 149 0 -4.77 CISPEP 3 SER L 7 PRO L 8 0 -1.84 CISPEP 4 TYR L 142 PRO L 143 0 1.52 CRYST1 66.179 78.925 194.214 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015111 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012670 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005149 0.00000