data_4S1X # _entry.id 4S1X # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4S1X RCSB RCSB088076 WWPDB D_1000088076 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4OXM . unspecified PDB 4P67 . unspecified # _pdbx_database_status.entry_id 4S1X _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2015-01-15 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Malashkevich, V.N.' 1 'Higgins, C.D.' 2 'Lai, J.R.' 3 'Almo, S.C.' 4 # _citation.id primary _citation.title 'A switch from parallel to antiparallel strand orientation in a coiled-coil X-ray structure via two core hydrophobic mutations.' _citation.journal_abbrev Biopolymers _citation.journal_volume 104 _citation.page_first 178 _citation.page_last 185 _citation.year 2015 _citation.journal_id_ASTM BIPMAA _citation.country US _citation.journal_id_ISSN 0006-3525 _citation.journal_id_CSD 0161 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25753192 _citation.pdbx_database_id_DOI 10.1002/bip.22631 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Malashkevich, V.N.' 1 primary 'Higgins, C.D.' 2 primary 'Almo, S.C.' 3 primary 'Lai, J.R.' 4 # _cell.length_a 34.450 _cell.length_b 98.523 _cell.length_c 34.553 _cell.angle_alpha 90.000 _cell.angle_beta 89.960 _cell.angle_gamma 90.000 _cell.entry_id 4S1X _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.entry_id 4S1X _symmetry.Int_Tables_number 4 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Truncated hemagglutinin' 4713.993 6 ? ? ? ? 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 water nat water 18.015 54 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'WGSIDQINGK(MSE)NRVIEKFHQIEKEFSEVEGRIQD(MSE)EKY' _entity_poly.pdbx_seq_one_letter_code_can WGSIDQINGKMNRVIEKFHQIEKEFSEVEGRIQDMEKY _entity_poly.pdbx_strand_id A,B,C,D,E,F _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TRP n 1 2 GLY n 1 3 SER n 1 4 ILE n 1 5 ASP n 1 6 GLN n 1 7 ILE n 1 8 ASN n 1 9 GLY n 1 10 LYS n 1 11 MSE n 1 12 ASN n 1 13 ARG n 1 14 VAL n 1 15 ILE n 1 16 GLU n 1 17 LYS n 1 18 PHE n 1 19 HIS n 1 20 GLN n 1 21 ILE n 1 22 GLU n 1 23 LYS n 1 24 GLU n 1 25 PHE n 1 26 SER n 1 27 GLU n 1 28 VAL n 1 29 GLU n 1 30 GLY n 1 31 ARG n 1 32 ILE n 1 33 GLN n 1 34 ASP n 1 35 MSE n 1 36 GLU n 1 37 LYS n 1 38 TYR n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'unidentified influenza virus' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 11309 _pdbx_entity_src_syn.details 'peptide synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A8TXJ0_9ORTO _struct_ref.pdbx_db_accession A8TXJ0 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 22 _struct_ref.pdbx_seq_one_letter_code IDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKY _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4S1X A 4 ? 38 ? A8TXJ0 22 ? 60 ? 45 83 2 1 4S1X B 4 ? 38 ? A8TXJ0 22 ? 60 ? 45 83 3 1 4S1X C 4 ? 38 ? A8TXJ0 22 ? 60 ? 45 83 4 1 4S1X D 4 ? 38 ? A8TXJ0 22 ? 60 ? 45 83 5 1 4S1X E 4 ? 38 ? A8TXJ0 22 ? 60 ? 45 83 6 1 4S1X F 4 ? 38 ? A8TXJ0 22 ? 60 ? 45 83 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4S1X TRP A 1 ? UNP A8TXJ0 ? ? 'EXPRESSION TAG' 42 1 1 4S1X GLY A 2 ? UNP A8TXJ0 ? ? 'EXPRESSION TAG' 43 2 1 4S1X SER A 3 ? UNP A8TXJ0 ? ? 'EXPRESSION TAG' 44 3 1 4S1X MSE A 11 ? UNP A8TXJ0 LEU 29 CONFLICT 52 4 1 4S1X ? A ? ? UNP A8TXJ0 GLU 34 DELETION ? 5 1 4S1X ? A ? ? UNP A8TXJ0 LYS 35 DELETION ? 6 1 4S1X ? A ? ? UNP A8TXJ0 THR 36 DELETION ? 7 1 4S1X ? A ? ? UNP A8TXJ0 ASN 37 DELETION ? 8 1 4S1X MSE A 35 ? UNP A8TXJ0 LEU 57 CONFLICT 80 9 2 4S1X TRP B 1 ? UNP A8TXJ0 ? ? 'EXPRESSION TAG' 42 10 2 4S1X GLY B 2 ? UNP A8TXJ0 ? ? 'EXPRESSION TAG' 43 11 2 4S1X SER B 3 ? UNP A8TXJ0 ? ? 'EXPRESSION TAG' 44 12 2 4S1X MSE B 11 ? UNP A8TXJ0 LEU 29 CONFLICT 52 13 2 4S1X ? B ? ? UNP A8TXJ0 GLU 34 DELETION ? 14 2 4S1X ? B ? ? UNP A8TXJ0 LYS 35 DELETION ? 15 2 4S1X ? B ? ? UNP A8TXJ0 THR 36 DELETION ? 16 2 4S1X ? B ? ? UNP A8TXJ0 ASN 37 DELETION ? 17 2 4S1X MSE B 35 ? UNP A8TXJ0 LEU 57 CONFLICT 80 18 3 4S1X TRP C 1 ? UNP A8TXJ0 ? ? 'EXPRESSION TAG' 42 19 3 4S1X GLY C 2 ? UNP A8TXJ0 ? ? 'EXPRESSION TAG' 43 20 3 4S1X SER C 3 ? UNP A8TXJ0 ? ? 'EXPRESSION TAG' 44 21 3 4S1X MSE C 11 ? UNP A8TXJ0 LEU 29 CONFLICT 52 22 3 4S1X ? C ? ? UNP A8TXJ0 GLU 34 DELETION ? 23 3 4S1X ? C ? ? UNP A8TXJ0 LYS 35 DELETION ? 24 3 4S1X ? C ? ? UNP A8TXJ0 THR 36 DELETION ? 25 3 4S1X ? C ? ? UNP A8TXJ0 ASN 37 DELETION ? 26 3 4S1X MSE C 35 ? UNP A8TXJ0 LEU 57 CONFLICT 80 27 4 4S1X TRP D 1 ? UNP A8TXJ0 ? ? 'EXPRESSION TAG' 42 28 4 4S1X GLY D 2 ? UNP A8TXJ0 ? ? 'EXPRESSION TAG' 43 29 4 4S1X SER D 3 ? UNP A8TXJ0 ? ? 'EXPRESSION TAG' 44 30 4 4S1X MSE D 11 ? UNP A8TXJ0 LEU 29 CONFLICT 52 31 4 4S1X ? D ? ? UNP A8TXJ0 GLU 34 DELETION ? 32 4 4S1X ? D ? ? UNP A8TXJ0 LYS 35 DELETION ? 33 4 4S1X ? D ? ? UNP A8TXJ0 THR 36 DELETION ? 34 4 4S1X ? D ? ? UNP A8TXJ0 ASN 37 DELETION ? 35 4 4S1X MSE D 35 ? UNP A8TXJ0 LEU 57 CONFLICT 80 36 5 4S1X TRP E 1 ? UNP A8TXJ0 ? ? 'EXPRESSION TAG' 42 37 5 4S1X GLY E 2 ? UNP A8TXJ0 ? ? 'EXPRESSION TAG' 43 38 5 4S1X SER E 3 ? UNP A8TXJ0 ? ? 'EXPRESSION TAG' 44 39 5 4S1X MSE E 11 ? UNP A8TXJ0 LEU 29 CONFLICT 52 40 5 4S1X ? E ? ? UNP A8TXJ0 GLU 34 DELETION ? 41 5 4S1X ? E ? ? UNP A8TXJ0 LYS 35 DELETION ? 42 5 4S1X ? E ? ? UNP A8TXJ0 THR 36 DELETION ? 43 5 4S1X ? E ? ? UNP A8TXJ0 ASN 37 DELETION ? 44 5 4S1X MSE E 35 ? UNP A8TXJ0 LEU 57 CONFLICT 80 45 6 4S1X TRP F 1 ? UNP A8TXJ0 ? ? 'EXPRESSION TAG' 42 46 6 4S1X GLY F 2 ? UNP A8TXJ0 ? ? 'EXPRESSION TAG' 43 47 6 4S1X SER F 3 ? UNP A8TXJ0 ? ? 'EXPRESSION TAG' 44 48 6 4S1X MSE F 11 ? UNP A8TXJ0 LEU 29 CONFLICT 52 49 6 4S1X ? F ? ? UNP A8TXJ0 GLU 34 DELETION ? 50 6 4S1X ? F ? ? UNP A8TXJ0 LYS 35 DELETION ? 51 6 4S1X ? F ? ? UNP A8TXJ0 THR 36 DELETION ? 52 6 4S1X ? F ? ? UNP A8TXJ0 ASN 37 DELETION ? 53 6 4S1X MSE F 35 ? UNP A8TXJ0 LEU 57 CONFLICT 80 54 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4S1X _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.07 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 40.67 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '10% PEG 4000, 5% 2-propanol, 0.1 M HEPES:NaOH, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RAYONIX MX-225' _diffrn_detector.pdbx_collection_date 2013-06-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9791 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 31-ID' _diffrn_source.pdbx_wavelength_list 0.9791 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 31-ID # _reflns.d_resolution_high 1.900 _reflns.d_resolution_low 50.000 _reflns.number_obs 18167 _reflns.pdbx_Rmerge_I_obs 0.077 _reflns.pdbx_netI_over_sigmaI 14.300 _reflns.pdbx_chi_squared 1.046 _reflns.pdbx_redundancy 5.000 _reflns.percent_possible_obs 99.600 _reflns.entry_id 4S1X _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.900 1.930 ? ? ? 0.741 ? ? 1.166 5.200 ? 937 99.900 1 1 1.930 1.970 ? ? ? 0.561 ? ? 1.101 5.300 ? 863 100.000 2 1 1.970 2.010 ? ? ? 0.477 ? ? 1.172 5.200 ? 899 100.000 3 1 2.010 2.050 ? ? ? 0.343 ? ? 1.155 5.300 ? 943 100.000 4 1 2.050 2.090 ? ? ? 0.294 ? ? 1.141 5.300 ? 883 100.000 5 1 2.090 2.140 ? ? ? 0.243 ? ? 1.065 5.300 ? 942 100.000 6 1 2.140 2.190 ? ? ? 0.213 ? ? 1.016 5.300 ? 885 100.000 7 1 2.190 2.250 ? ? ? 0.190 ? ? 1.091 5.300 ? 885 100.000 8 1 2.250 2.320 ? ? ? 0.150 ? ? 1.019 5.200 ? 951 100.000 9 1 2.320 2.390 ? ? ? 0.142 ? ? 0.939 5.200 ? 871 100.000 10 1 2.390 2.480 ? ? ? 0.124 ? ? 0.931 5.200 ? 935 100.000 11 1 2.480 2.580 ? ? ? 0.115 ? ? 0.984 5.200 ? 890 99.900 12 1 2.580 2.700 ? ? ? 0.105 ? ? 1.000 5.100 ? 920 100.000 13 1 2.700 2.840 ? ? ? 0.096 ? ? 1.023 5.000 ? 926 100.000 14 1 2.840 3.020 ? ? ? 0.084 ? ? 0.932 4.800 ? 876 99.800 15 1 3.020 3.250 ? ? ? 0.075 ? ? 1.046 4.600 ? 934 99.800 16 1 3.250 3.580 ? ? ? 0.063 ? ? 0.988 4.400 ? 903 99.800 17 1 3.580 4.090 ? ? ? 0.057 ? ? 1.142 4.500 ? 913 99.800 18 1 4.090 5.160 ? ? ? 0.053 ? ? 0.969 4.400 ? 914 98.900 19 1 5.160 50.000 ? ? ? 0.053 ? ? 0.982 4.000 ? 897 94.800 20 1 # _refine.entry_id 4S1X _refine.ls_d_res_high 1.9000 _refine.ls_d_res_low 28.2900 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.6900 _refine.ls_number_reflns_obs 18235 _refine.ls_number_reflns_all 18235 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'U VALUES : WITH TLS ADDED HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2095 _refine.ls_R_factor_R_work 0.2078 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2455 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.8000 _refine.ls_number_reflns_R_free 871 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 41.0590 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 27.5000 _refine.aniso_B[2][2] -46.5400 _refine.aniso_B[3][3] 19.0400 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 25.4700 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9430 _refine.correlation_coeff_Fo_to_Fc_free 0.9170 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.0350 _refine.pdbx_overall_ESU_R_Free 0.0320 _refine.overall_SU_ML 0.0900 _refine.overall_SU_B 5.9370 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 74.460 _refine.B_iso_min 25.830 _refine.pdbx_overall_phase_error ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1648 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 54 _refine_hist.number_atoms_total 1708 _refine_hist.d_res_high 1.9000 _refine_hist.d_res_low 28.2900 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1683 0.008 0.019 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2218 1.147 1.959 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 186 4.773 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 103 36.447 25.534 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 337 17.983 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 11 24.416 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 221 0.080 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1251 0.004 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 768 1.957 5.454 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 940 2.886 73.466 ? ? 'X-RAY DIFFRACTION' r_scbond_it 915 3.316 6.351 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.8970 _refine_ls_shell.d_res_low 1.9460 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 92.1600 _refine_ls_shell.number_reflns_R_work 1156 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2140 _refine_ls_shell.R_factor_R_free 0.3100 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 66 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1222 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4S1X _struct.title 'Crystal structure of HA2-Del-L2seM, Central Coiled-Coil from Influenza Hemagglutinin HA2 without Heptad Repeat Stutter' _struct.pdbx_descriptor 'Hemagglutinin HA2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4S1X _struct_keywords.text 'Marburg Virus, GP2 Ectodomain, Post-Fusion Conformation, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 2 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? # loop_ _struct_biol.id _struct_biol.details 1 'trimer or tetramer' 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TRP A 1 ? TYR A 38 ? TRP A 42 TYR A 83 1 ? 38 HELX_P HELX_P2 2 SER B 3 ? TYR B 38 ? SER B 44 TYR B 83 1 ? 36 HELX_P HELX_P3 3 ASP C 5 ? PHE C 25 ? ASP C 46 PHE C 70 1 ? 21 HELX_P HELX_P4 4 GLY D 2 ? TYR D 38 ? GLY D 43 TYR D 83 1 ? 37 HELX_P HELX_P5 5 SER E 3 ? TYR E 38 ? SER E 44 TYR E 83 1 ? 36 HELX_P HELX_P6 6 ASP F 5 ? GLU F 24 ? ASP F 46 GLU F 69 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A LYS 10 C ? ? ? 1_555 A MSE 11 N ? ? A LYS 51 A MSE 52 1_555 ? ? ? ? ? ? ? 1.331 ? covale2 covale ? ? A MSE 11 C ? ? ? 1_555 A ASN 12 N ? ? A MSE 52 A ASN 53 1_555 ? ? ? ? ? ? ? 1.329 ? covale3 covale ? ? A ASP 34 C ? ? ? 1_555 A MSE 35 N ? ? A ASP 79 A MSE 80 1_555 ? ? ? ? ? ? ? 1.329 ? covale4 covale ? ? A MSE 35 C ? ? ? 1_555 A GLU 36 N ? ? A MSE 80 A GLU 81 1_555 ? ? ? ? ? ? ? 1.335 ? covale5 covale ? ? B LYS 10 C ? ? ? 1_555 B MSE 11 N ? ? B LYS 51 B MSE 52 1_555 ? ? ? ? ? ? ? 1.332 ? covale6 covale ? ? B MSE 11 C ? ? ? 1_555 B ASN 12 N ? ? B MSE 52 B ASN 53 1_555 ? ? ? ? ? ? ? 1.328 ? covale7 covale ? ? B ASP 34 C ? ? ? 1_555 B MSE 35 N ? ? B ASP 79 B MSE 80 1_555 ? ? ? ? ? ? ? 1.330 ? covale8 covale ? ? B MSE 35 C ? ? ? 1_555 B GLU 36 N ? ? B MSE 80 B GLU 81 1_555 ? ? ? ? ? ? ? 1.330 ? covale9 covale ? ? C LYS 10 C ? ? ? 1_555 C MSE 11 N ? ? C LYS 51 C MSE 52 1_555 ? ? ? ? ? ? ? 1.328 ? covale10 covale ? ? C MSE 11 C ? ? ? 1_555 C ASN 12 N ? ? C MSE 52 C ASN 53 1_555 ? ? ? ? ? ? ? 1.332 ? covale11 covale ? ? D LYS 10 C ? ? ? 1_555 D MSE 11 N ? ? D LYS 51 D MSE 52 1_555 ? ? ? ? ? ? ? 1.328 ? covale12 covale ? ? D MSE 11 C ? ? ? 1_555 D ASN 12 N ? ? D MSE 52 D ASN 53 1_555 ? ? ? ? ? ? ? 1.339 ? covale13 covale ? ? D ASP 34 C ? ? ? 1_555 D MSE 35 N ? ? D ASP 79 D MSE 80 1_555 ? ? ? ? ? ? ? 1.325 ? covale14 covale ? ? D MSE 35 C ? ? ? 1_555 D GLU 36 N ? ? D MSE 80 D GLU 81 1_555 ? ? ? ? ? ? ? 1.336 ? covale15 covale ? ? E LYS 10 C ? ? ? 1_555 E MSE 11 N ? ? E LYS 51 E MSE 52 1_555 ? ? ? ? ? ? ? 1.330 ? covale16 covale ? ? E MSE 11 C ? ? ? 1_555 E ASN 12 N ? ? E MSE 52 E ASN 53 1_555 ? ? ? ? ? ? ? 1.333 ? covale17 covale ? ? E ASP 34 C ? ? ? 1_555 E MSE 35 N ? ? E ASP 79 E MSE 80 1_555 ? ? ? ? ? ? ? 1.335 ? covale18 covale ? ? E MSE 35 C ? ? ? 1_555 E GLU 36 N ? ? E MSE 80 E GLU 81 1_555 ? ? ? ? ? ? ? 1.328 ? covale19 covale ? ? F LYS 10 C ? ? ? 1_555 F MSE 11 N ? ? F LYS 51 F MSE 52 1_555 ? ? ? ? ? ? ? 1.338 ? covale20 covale ? ? F MSE 11 C ? ? ? 1_555 F ASN 12 N ? ? F MSE 52 F ASN 53 1_555 ? ? ? ? ? ? ? 1.326 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE GOL E 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 GLU E 22 ? GLU E 67 . ? 1_555 ? 2 AC1 3 HOH L . ? HOH E 204 . ? 1_555 ? 3 AC1 3 HOH L . ? HOH E 207 . ? 1_555 ? # _atom_sites.entry_id 4S1X _atom_sites.fract_transf_matrix[1][1] 0.029028 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] -0.000021 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010150 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.028941 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TRP 1 42 42 TRP TRP A . n A 1 2 GLY 2 43 43 GLY GLY A . n A 1 3 SER 3 44 44 SER SER A . n A 1 4 ILE 4 45 45 ILE ILE A . n A 1 5 ASP 5 46 46 ASP ASP A . n A 1 6 GLN 6 47 47 GLN GLN A . n A 1 7 ILE 7 48 48 ILE ILE A . n A 1 8 ASN 8 49 49 ASN ASN A . n A 1 9 GLY 9 50 50 GLY GLY A . n A 1 10 LYS 10 51 51 LYS LYS A . n A 1 11 MSE 11 52 52 MSE MSE A . n A 1 12 ASN 12 53 53 ASN ASN A . n A 1 13 ARG 13 54 54 ARG ARG A . n A 1 14 VAL 14 55 55 VAL VAL A . n A 1 15 ILE 15 56 56 ILE ILE A . n A 1 16 GLU 16 57 57 GLU GLU A . n A 1 17 LYS 17 58 58 LYS LYS A . n A 1 18 PHE 18 63 63 PHE PHE A . n A 1 19 HIS 19 64 64 HIS HIS A . n A 1 20 GLN 20 65 65 GLN GLN A . n A 1 21 ILE 21 66 66 ILE ILE A . n A 1 22 GLU 22 67 67 GLU GLU A . n A 1 23 LYS 23 68 68 LYS LYS A . n A 1 24 GLU 24 69 69 GLU GLU A . n A 1 25 PHE 25 70 70 PHE PHE A . n A 1 26 SER 26 71 71 SER SER A . n A 1 27 GLU 27 72 72 GLU GLU A . n A 1 28 VAL 28 73 73 VAL VAL A . n A 1 29 GLU 29 74 74 GLU GLU A . n A 1 30 GLY 30 75 75 GLY GLY A . n A 1 31 ARG 31 76 76 ARG ARG A . n A 1 32 ILE 32 77 77 ILE ILE A . n A 1 33 GLN 33 78 78 GLN GLN A . n A 1 34 ASP 34 79 79 ASP ASP A . n A 1 35 MSE 35 80 80 MSE MSE A . n A 1 36 GLU 36 81 81 GLU GLU A . n A 1 37 LYS 37 82 82 LYS LYS A . n A 1 38 TYR 38 83 83 TYR TYR A . n B 1 1 TRP 1 42 ? ? ? B . n B 1 2 GLY 2 43 43 GLY GLY B . n B 1 3 SER 3 44 44 SER SER B . n B 1 4 ILE 4 45 45 ILE ILE B . n B 1 5 ASP 5 46 46 ASP ASP B . n B 1 6 GLN 6 47 47 GLN GLN B . n B 1 7 ILE 7 48 48 ILE ILE B . n B 1 8 ASN 8 49 49 ASN ASN B . n B 1 9 GLY 9 50 50 GLY GLY B . n B 1 10 LYS 10 51 51 LYS LYS B . n B 1 11 MSE 11 52 52 MSE MSE B . n B 1 12 ASN 12 53 53 ASN ASN B . n B 1 13 ARG 13 54 54 ARG ARG B . n B 1 14 VAL 14 55 55 VAL VAL B . n B 1 15 ILE 15 56 56 ILE ILE B . n B 1 16 GLU 16 57 57 GLU GLU B . n B 1 17 LYS 17 58 58 LYS LYS B . n B 1 18 PHE 18 63 63 PHE PHE B . n B 1 19 HIS 19 64 64 HIS HIS B . n B 1 20 GLN 20 65 65 GLN GLN B . n B 1 21 ILE 21 66 66 ILE ILE B . n B 1 22 GLU 22 67 67 GLU GLU B . n B 1 23 LYS 23 68 68 LYS LYS B . n B 1 24 GLU 24 69 69 GLU GLU B . n B 1 25 PHE 25 70 70 PHE PHE B . n B 1 26 SER 26 71 71 SER SER B . n B 1 27 GLU 27 72 72 GLU GLU B . n B 1 28 VAL 28 73 73 VAL VAL B . n B 1 29 GLU 29 74 74 GLU GLU B . n B 1 30 GLY 30 75 75 GLY GLY B . n B 1 31 ARG 31 76 76 ARG ARG B . n B 1 32 ILE 32 77 77 ILE ILE B . n B 1 33 GLN 33 78 78 GLN GLN B . n B 1 34 ASP 34 79 79 ASP ASP B . n B 1 35 MSE 35 80 80 MSE MSE B . n B 1 36 GLU 36 81 81 GLU GLU B . n B 1 37 LYS 37 82 82 LYS LYS B . n B 1 38 TYR 38 83 83 TYR TYR B . n C 1 1 TRP 1 42 ? ? ? C . n C 1 2 GLY 2 43 ? ? ? C . n C 1 3 SER 3 44 ? ? ? C . n C 1 4 ILE 4 45 45 ILE ILE C . n C 1 5 ASP 5 46 46 ASP ASP C . n C 1 6 GLN 6 47 47 GLN GLN C . n C 1 7 ILE 7 48 48 ILE ILE C . n C 1 8 ASN 8 49 49 ASN ASN C . n C 1 9 GLY 9 50 50 GLY GLY C . n C 1 10 LYS 10 51 51 LYS LYS C . n C 1 11 MSE 11 52 52 MSE MSE C . n C 1 12 ASN 12 53 53 ASN ASN C . n C 1 13 ARG 13 54 54 ARG ARG C . n C 1 14 VAL 14 55 55 VAL VAL C . n C 1 15 ILE 15 56 56 ILE ILE C . n C 1 16 GLU 16 57 57 GLU GLU C . n C 1 17 LYS 17 58 58 LYS LYS C . n C 1 18 PHE 18 63 63 PHE PHE C . n C 1 19 HIS 19 64 64 HIS HIS C . n C 1 20 GLN 20 65 65 GLN GLN C . n C 1 21 ILE 21 66 66 ILE ILE C . n C 1 22 GLU 22 67 67 GLU GLU C . n C 1 23 LYS 23 68 68 LYS LYS C . n C 1 24 GLU 24 69 69 GLU GLU C . n C 1 25 PHE 25 70 70 PHE PHE C . n C 1 26 SER 26 71 ? ? ? C . n C 1 27 GLU 27 72 ? ? ? C . n C 1 28 VAL 28 73 ? ? ? C . n C 1 29 GLU 29 74 ? ? ? C . n C 1 30 GLY 30 75 ? ? ? C . n C 1 31 ARG 31 76 ? ? ? C . n C 1 32 ILE 32 77 ? ? ? C . n C 1 33 GLN 33 78 ? ? ? C . n C 1 34 ASP 34 79 ? ? ? C . n C 1 35 MSE 35 80 ? ? ? C . n C 1 36 GLU 36 81 ? ? ? C . n C 1 37 LYS 37 82 ? ? ? C . n C 1 38 TYR 38 83 ? ? ? C . n D 1 1 TRP 1 42 42 TRP TRP D . n D 1 2 GLY 2 43 43 GLY GLY D . n D 1 3 SER 3 44 44 SER SER D . n D 1 4 ILE 4 45 45 ILE ILE D . n D 1 5 ASP 5 46 46 ASP ASP D . n D 1 6 GLN 6 47 47 GLN GLN D . n D 1 7 ILE 7 48 48 ILE ILE D . n D 1 8 ASN 8 49 49 ASN ASN D . n D 1 9 GLY 9 50 50 GLY GLY D . n D 1 10 LYS 10 51 51 LYS LYS D . n D 1 11 MSE 11 52 52 MSE MSE D . n D 1 12 ASN 12 53 53 ASN ASN D . n D 1 13 ARG 13 54 54 ARG ARG D . n D 1 14 VAL 14 55 55 VAL VAL D . n D 1 15 ILE 15 56 56 ILE ILE D . n D 1 16 GLU 16 57 57 GLU GLU D . n D 1 17 LYS 17 58 58 LYS LYS D . n D 1 18 PHE 18 63 63 PHE PHE D . n D 1 19 HIS 19 64 64 HIS HIS D . n D 1 20 GLN 20 65 65 GLN GLN D . n D 1 21 ILE 21 66 66 ILE ILE D . n D 1 22 GLU 22 67 67 GLU GLU D . n D 1 23 LYS 23 68 68 LYS LYS D . n D 1 24 GLU 24 69 69 GLU GLU D . n D 1 25 PHE 25 70 70 PHE PHE D . n D 1 26 SER 26 71 71 SER SER D . n D 1 27 GLU 27 72 72 GLU GLU D . n D 1 28 VAL 28 73 73 VAL VAL D . n D 1 29 GLU 29 74 74 GLU GLU D . n D 1 30 GLY 30 75 75 GLY GLY D . n D 1 31 ARG 31 76 76 ARG ARG D . n D 1 32 ILE 32 77 77 ILE ILE D . n D 1 33 GLN 33 78 78 GLN GLN D . n D 1 34 ASP 34 79 79 ASP ASP D . n D 1 35 MSE 35 80 80 MSE MSE D . n D 1 36 GLU 36 81 81 GLU GLU D . n D 1 37 LYS 37 82 82 LYS LYS D . n D 1 38 TYR 38 83 83 TYR TYR D . n E 1 1 TRP 1 42 ? ? ? E . n E 1 2 GLY 2 43 43 GLY GLY E . n E 1 3 SER 3 44 44 SER SER E . n E 1 4 ILE 4 45 45 ILE ILE E . n E 1 5 ASP 5 46 46 ASP ASP E . n E 1 6 GLN 6 47 47 GLN GLN E . n E 1 7 ILE 7 48 48 ILE ILE E . n E 1 8 ASN 8 49 49 ASN ASN E . n E 1 9 GLY 9 50 50 GLY GLY E . n E 1 10 LYS 10 51 51 LYS LYS E . n E 1 11 MSE 11 52 52 MSE MSE E . n E 1 12 ASN 12 53 53 ASN ASN E . n E 1 13 ARG 13 54 54 ARG ARG E . n E 1 14 VAL 14 55 55 VAL VAL E . n E 1 15 ILE 15 56 56 ILE ILE E . n E 1 16 GLU 16 57 57 GLU GLU E . n E 1 17 LYS 17 58 58 LYS LYS E . n E 1 18 PHE 18 63 63 PHE PHE E . n E 1 19 HIS 19 64 64 HIS HIS E . n E 1 20 GLN 20 65 65 GLN GLN E . n E 1 21 ILE 21 66 66 ILE ILE E . n E 1 22 GLU 22 67 67 GLU GLU E . n E 1 23 LYS 23 68 68 LYS LYS E . n E 1 24 GLU 24 69 69 GLU GLU E . n E 1 25 PHE 25 70 70 PHE PHE E . n E 1 26 SER 26 71 71 SER SER E . n E 1 27 GLU 27 72 72 GLU GLU E . n E 1 28 VAL 28 73 73 VAL VAL E . n E 1 29 GLU 29 74 74 GLU GLU E . n E 1 30 GLY 30 75 75 GLY GLY E . n E 1 31 ARG 31 76 76 ARG ARG E . n E 1 32 ILE 32 77 77 ILE ILE E . n E 1 33 GLN 33 78 78 GLN GLN E . n E 1 34 ASP 34 79 79 ASP ASP E . n E 1 35 MSE 35 80 80 MSE MSE E . n E 1 36 GLU 36 81 81 GLU GLU E . n E 1 37 LYS 37 82 82 LYS LYS E . n E 1 38 TYR 38 83 83 TYR TYR E . n F 1 1 TRP 1 42 ? ? ? F . n F 1 2 GLY 2 43 ? ? ? F . n F 1 3 SER 3 44 ? ? ? F . n F 1 4 ILE 4 45 45 ILE ILE F . n F 1 5 ASP 5 46 46 ASP ASP F . n F 1 6 GLN 6 47 47 GLN GLN F . n F 1 7 ILE 7 48 48 ILE ILE F . n F 1 8 ASN 8 49 49 ASN ASN F . n F 1 9 GLY 9 50 50 GLY GLY F . n F 1 10 LYS 10 51 51 LYS LYS F . n F 1 11 MSE 11 52 52 MSE MSE F . n F 1 12 ASN 12 53 53 ASN ASN F . n F 1 13 ARG 13 54 54 ARG ARG F . n F 1 14 VAL 14 55 55 VAL VAL F . n F 1 15 ILE 15 56 56 ILE ILE F . n F 1 16 GLU 16 57 57 GLU GLU F . n F 1 17 LYS 17 58 58 LYS LYS F . n F 1 18 PHE 18 63 63 PHE PHE F . n F 1 19 HIS 19 64 64 HIS HIS F . n F 1 20 GLN 20 65 65 GLN GLN F . n F 1 21 ILE 21 66 66 ILE ILE F . n F 1 22 GLU 22 67 67 GLU GLU F . n F 1 23 LYS 23 68 68 LYS LYS F . n F 1 24 GLU 24 69 69 GLU GLU F . n F 1 25 PHE 25 70 70 PHE PHE F . n F 1 26 SER 26 71 ? ? ? F . n F 1 27 GLU 27 72 ? ? ? F . n F 1 28 VAL 28 73 ? ? ? F . n F 1 29 GLU 29 74 ? ? ? F . n F 1 30 GLY 30 75 ? ? ? F . n F 1 31 ARG 31 76 ? ? ? F . n F 1 32 ILE 32 77 ? ? ? F . n F 1 33 GLN 33 78 ? ? ? F . n F 1 34 ASP 34 79 ? ? ? F . n F 1 35 MSE 35 80 ? ? ? F . n F 1 36 GLU 36 81 ? ? ? F . n F 1 37 LYS 37 82 ? ? ? F . n F 1 38 TYR 38 83 ? ? ? F . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 11 A MSE 52 ? MET SELENOMETHIONINE 2 A MSE 35 A MSE 80 ? MET SELENOMETHIONINE 3 B MSE 11 B MSE 52 ? MET SELENOMETHIONINE 4 B MSE 35 B MSE 80 ? MET SELENOMETHIONINE 5 C MSE 11 C MSE 52 ? MET SELENOMETHIONINE 6 D MSE 11 D MSE 52 ? MET SELENOMETHIONINE 7 D MSE 35 D MSE 80 ? MET SELENOMETHIONINE 8 E MSE 11 E MSE 52 ? MET SELENOMETHIONINE 9 E MSE 35 E MSE 80 ? MET SELENOMETHIONINE 10 F MSE 11 F MSE 52 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA trimeric 3 2 author_and_software_defined_assembly PISA trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,H,I,J 2 1 D,E,F,G,K,L,M # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3270 ? 1 MORE -40 ? 1 'SSA (A^2)' 7330 ? 2 'ABSA (A^2)' 3140 ? 2 MORE -37 ? 2 'SSA (A^2)' 7170 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-04-01 2 'Structure model' 1 1 2015-06-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 2.4696 11.6098 -12.2795 0.0094 0.0237 0.0775 -0.0031 -0.0101 0.0147 0.6674 3.2122 0.6829 -1.4054 0.5407 -0.9485 -0.0563 -0.0277 0.0840 0.0328 0.0547 -0.1454 0.1236 -0.0680 0.0425 'X-RAY DIFFRACTION' 2 ? refined -4.7127 12.5235 -18.9204 0.0090 0.0296 0.0369 0.0069 -0.0017 0.0012 0.0588 4.8590 0.6551 -0.1896 0.1246 -1.5590 0.0154 -0.0510 0.0356 0.0376 -0.0069 -0.0006 0.0327 -0.0002 0.0771 'X-RAY DIFFRACTION' 3 ? refined 5.8130 26.9384 -17.8399 0.0420 0.0741 0.1057 -0.0505 -0.0584 0.0601 0.8114 3.6322 0.0229 1.6901 0.1214 0.2509 0.0137 -0.0230 0.0093 0.0300 -0.0779 -0.2276 0.0785 -0.0066 0.0093 'X-RAY DIFFRACTION' 4 ? refined -12.4364 36.4155 -2.4359 0.0330 0.0243 0.0528 0.0020 0.0341 -0.0064 0.3397 3.3447 0.2609 -0.6664 -0.1841 0.8915 0.0699 -0.0747 0.0048 0.0557 0.0703 -0.0907 0.0130 0.0156 -0.0388 'X-RAY DIFFRACTION' 5 ? refined -18.9455 37.1067 4.7547 0.0276 0.0347 0.0411 0.0050 0.0189 -0.0105 0.5953 5.4012 0.0624 -1.6679 -0.0674 0.3249 0.0351 -0.0720 0.0370 0.0448 0.0087 0.0192 0.0344 0.0296 -0.0199 'X-RAY DIFFRACTION' 6 ? refined -17.9083 51.5442 -5.8756 0.0641 0.0495 0.0996 0.0183 0.0021 0.0385 0.7452 1.8557 0.1336 0.2666 -0.0461 -0.4375 -0.0523 0.1173 -0.0650 0.1152 0.0119 -0.0094 -0.0938 0.0296 -0.0444 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 42 A 83 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 43 B 83 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 C 45 C 70 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 D 42 D 83 ? . . . . ? 'X-RAY DIFFRACTION' 5 5 E 43 E 101 ? . . . . ? 'X-RAY DIFFRACTION' 6 6 F 45 F 70 ? . . . . ? # _phasing.method SAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 REFMAC 5.8.0073 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.15 'July. 29, 2014' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 PHENIX . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C A LYS 58 ? ? N A PHE 63 ? ? 1.578 1.336 0.242 0.023 Y 2 1 C B LYS 58 ? ? N B PHE 63 ? ? 1.493 1.336 0.157 0.023 Y 3 1 C D LYS 58 ? ? N D PHE 63 ? ? 1.580 1.336 0.244 0.023 Y 4 1 C E LYS 58 ? ? N E PHE 63 ? ? 1.493 1.336 0.157 0.023 Y # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 O _pdbx_validate_rmsd_angle.auth_asym_id_1 C _pdbx_validate_rmsd_angle.auth_comp_id_1 LYS _pdbx_validate_rmsd_angle.auth_seq_id_1 58 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 C _pdbx_validate_rmsd_angle.auth_asym_id_2 C _pdbx_validate_rmsd_angle.auth_comp_id_2 LYS _pdbx_validate_rmsd_angle.auth_seq_id_2 58 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N _pdbx_validate_rmsd_angle.auth_asym_id_3 C _pdbx_validate_rmsd_angle.auth_comp_id_3 PHE _pdbx_validate_rmsd_angle.auth_seq_id_3 63 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 110.10 _pdbx_validate_rmsd_angle.angle_target_value 122.70 _pdbx_validate_rmsd_angle.angle_deviation -12.60 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.60 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU F 67 ? ? -56.86 -84.60 2 1 GLU F 69 ? ? -71.85 21.19 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B TRP 42 ? B TRP 1 2 1 Y 1 C TRP 42 ? C TRP 1 3 1 Y 1 C GLY 43 ? C GLY 2 4 1 Y 1 C SER 44 ? C SER 3 5 1 Y 1 C SER 71 ? C SER 26 6 1 Y 1 C GLU 72 ? C GLU 27 7 1 Y 1 C VAL 73 ? C VAL 28 8 1 Y 1 C GLU 74 ? C GLU 29 9 1 Y 1 C GLY 75 ? C GLY 30 10 1 Y 1 C ARG 76 ? C ARG 31 11 1 Y 1 C ILE 77 ? C ILE 32 12 1 Y 1 C GLN 78 ? C GLN 33 13 1 Y 1 C ASP 79 ? C ASP 34 14 1 Y 1 C MSE 80 ? C MSE 35 15 1 Y 1 C GLU 81 ? C GLU 36 16 1 Y 1 C LYS 82 ? C LYS 37 17 1 Y 1 C TYR 83 ? C TYR 38 18 1 Y 1 E TRP 42 ? E TRP 1 19 1 Y 1 F TRP 42 ? F TRP 1 20 1 Y 1 F GLY 43 ? F GLY 2 21 1 Y 1 F SER 44 ? F SER 3 22 1 Y 1 F SER 71 ? F SER 26 23 1 Y 1 F GLU 72 ? F GLU 27 24 1 Y 1 F VAL 73 ? F VAL 28 25 1 Y 1 F GLU 74 ? F GLU 29 26 1 Y 1 F GLY 75 ? F GLY 30 27 1 Y 1 F ARG 76 ? F ARG 31 28 1 Y 1 F ILE 77 ? F ILE 32 29 1 Y 1 F GLN 78 ? F GLN 33 30 1 Y 1 F ASP 79 ? F ASP 34 31 1 Y 1 F MSE 80 ? F MSE 35 32 1 Y 1 F GLU 81 ? F GLU 36 33 1 Y 1 F LYS 82 ? F LYS 37 34 1 Y 1 F TYR 83 ? F TYR 38 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH # loop_ _pdbx_reflns_twin.domain_id _pdbx_reflns_twin.crystal_id _pdbx_reflns_twin.diffrn_id _pdbx_reflns_twin.fraction _pdbx_reflns_twin.operator _pdbx_reflns_twin.type _pdbx_reflns_twin.mean_F_square_over_mean_F2 _pdbx_reflns_twin.mean_I2_over_mean_I_square 1 1 1 0.374 'H, K, L' ? ? ? 2 1 1 0.141 -h,-k,l ? ? ? 3 1 1 0.098 'L, -K, H' ? ? ? 4 1 1 0.388 '-L, K, H' ? ? ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 GOL 1 101 91 GOL GOL E . H 3 HOH 1 101 2 HOH HOH A . H 3 HOH 2 102 12 HOH HOH A . H 3 HOH 3 103 19 HOH HOH A . H 3 HOH 4 104 24 HOH HOH A . H 3 HOH 5 105 25 HOH HOH A . H 3 HOH 6 106 26 HOH HOH A . H 3 HOH 7 107 29 HOH HOH A . H 3 HOH 8 108 30 HOH HOH A . H 3 HOH 9 109 39 HOH HOH A . H 3 HOH 10 110 40 HOH HOH A . H 3 HOH 11 111 47 HOH HOH A . H 3 HOH 12 112 51 HOH HOH A . H 3 HOH 13 113 53 HOH HOH A . H 3 HOH 14 114 54 HOH HOH A . I 3 HOH 1 101 1 HOH HOH B . I 3 HOH 2 102 13 HOH HOH B . I 3 HOH 3 103 14 HOH HOH B . I 3 HOH 4 104 15 HOH HOH B . I 3 HOH 5 105 17 HOH HOH B . I 3 HOH 6 106 18 HOH HOH B . I 3 HOH 7 107 22 HOH HOH B . I 3 HOH 8 108 33 HOH HOH B . I 3 HOH 9 109 35 HOH HOH B . I 3 HOH 10 110 37 HOH HOH B . I 3 HOH 11 111 43 HOH HOH B . I 3 HOH 12 112 46 HOH HOH B . I 3 HOH 13 113 50 HOH HOH B . I 3 HOH 14 114 52 HOH HOH B . I 3 HOH 15 115 58 HOH HOH B . J 3 HOH 1 101 21 HOH HOH C . J 3 HOH 2 102 49 HOH HOH C . K 3 HOH 1 101 4 HOH HOH D . K 3 HOH 2 102 7 HOH HOH D . K 3 HOH 3 103 10 HOH HOH D . K 3 HOH 4 104 23 HOH HOH D . K 3 HOH 5 105 28 HOH HOH D . K 3 HOH 6 106 31 HOH HOH D . K 3 HOH 7 107 55 HOH HOH D . K 3 HOH 8 108 56 HOH HOH D . L 3 HOH 1 201 6 HOH HOH E . L 3 HOH 2 202 8 HOH HOH E . L 3 HOH 3 203 11 HOH HOH E . L 3 HOH 4 204 20 HOH HOH E . L 3 HOH 5 205 34 HOH HOH E . L 3 HOH 6 206 36 HOH HOH E . L 3 HOH 7 207 38 HOH HOH E . L 3 HOH 8 208 41 HOH HOH E . L 3 HOH 9 209 42 HOH HOH E . L 3 HOH 10 210 44 HOH HOH E . L 3 HOH 11 211 45 HOH HOH E . L 3 HOH 12 212 48 HOH HOH E . M 3 HOH 1 101 27 HOH HOH F . M 3 HOH 2 102 32 HOH HOH F . M 3 HOH 3 103 57 HOH HOH F . #