HEADER LYASE 19-JAN-15 4S28 TITLE CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA THIC WITH BOUND TITLE 2 AMINOIMIDAZOLE RIBONUCLEOTIDE, S-ADENOSYLHOMOCYSTEINE, FE4S4 CLUSTER TITLE 3 AND FE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOMETHYLPYRIMIDINE SYNTHASE, CHLOROPLASTIC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 72-644; COMPND 5 SYNONYM: HYDROXYMETHYLPYRIMIDINE PHOSPHATE SYNTHASE, HMP-P SYNTHASE, COMPND 6 HMP-PHOSPHATE SYNTHASE, HMPP SYNTHASE, PROTEIN PYRIMIDINE REQUIRING, COMPND 7 THIAMINE BIOSYNTHESIS PROTEIN THIC, PROTEIN THIAMINE C; COMPND 8 EC: 4.1.99.17; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: THIC, PY; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS ALPHA-BETA BARREL, RADICAL SAM SUPERFAMILY, IRON-SULFUR CLUSTER, KEYWDS 2 THIAMIN, VITAMIN B1, VITAMIN B12, DOMAIN SWAPPING, ADOMET AND KEYWDS 3 GLUTAMATE MUTASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.K.FENWICK,A.P.MEHTA,Y.ZHANG,S.ABDELWAHED,T.P.BEGLEY,S.E.EALICK REVDAT 2 20-SEP-23 4S28 1 REMARK SEQADV LINK REVDAT 1 08-APR-15 4S28 0 JRNL AUTH M.K.FENWICK,A.P.MEHTA,Y.ZHANG,S.H.ABDELWAHED,T.P.BEGLEY, JRNL AUTH 2 S.E.EALICK JRNL TITL NON-CANONICAL ACTIVE SITE ARCHITECTURE OF THE RADICAL SAM JRNL TITL 2 THIAMIN PYRIMIDINE SYNTHASE. JRNL REF NAT COMMUN V. 6 6480 JRNL REFN ESSN 2041-1723 JRNL PMID 25813242 JRNL DOI 10.1038/NCOMMS7480 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1839 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 158556 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.117 REMARK 3 R VALUE (WORKING SET) : 0.116 REMARK 3 FREE R VALUE : 0.137 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 7765 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.0077 - 3.8795 0.99 5287 278 0.1385 0.1500 REMARK 3 2 3.8795 - 3.0796 1.00 5168 272 0.1294 0.1558 REMARK 3 3 3.0796 - 2.6904 0.99 5078 306 0.1316 0.1511 REMARK 3 4 2.6904 - 2.4445 1.00 5058 305 0.1255 0.1300 REMARK 3 5 2.4445 - 2.2693 1.00 5127 252 0.1204 0.1360 REMARK 3 6 2.2693 - 2.1355 1.00 5117 230 0.1150 0.1283 REMARK 3 7 2.1355 - 2.0285 0.99 5053 267 0.1079 0.1183 REMARK 3 8 2.0285 - 1.9402 1.00 5080 260 0.1060 0.1320 REMARK 3 9 1.9402 - 1.8655 1.00 5029 296 0.1045 0.1183 REMARK 3 10 1.8655 - 1.8012 1.00 5070 259 0.1030 0.1303 REMARK 3 11 1.8012 - 1.7449 1.00 5080 247 0.0965 0.1287 REMARK 3 12 1.7449 - 1.6950 0.99 4979 288 0.0926 0.1169 REMARK 3 13 1.6950 - 1.6504 0.99 5026 233 0.0934 0.1232 REMARK 3 14 1.6504 - 1.6101 0.99 5049 265 0.0897 0.1093 REMARK 3 15 1.6101 - 1.5735 1.00 5067 200 0.0875 0.1151 REMARK 3 16 1.5735 - 1.5400 1.00 5047 251 0.0858 0.1117 REMARK 3 17 1.5400 - 1.5092 0.99 5001 261 0.0865 0.1256 REMARK 3 18 1.5092 - 1.4807 0.99 5026 267 0.0892 0.1260 REMARK 3 19 1.4807 - 1.4543 0.99 4977 276 0.1008 0.1226 REMARK 3 20 1.4543 - 1.4296 0.99 5020 242 0.0999 0.1274 REMARK 3 21 1.4296 - 1.4065 0.99 5002 245 0.1061 0.1438 REMARK 3 22 1.4065 - 1.3849 0.99 4979 254 0.1047 0.1377 REMARK 3 23 1.3849 - 1.3645 0.99 5005 258 0.1059 0.1247 REMARK 3 24 1.3645 - 1.3453 0.99 4957 254 0.1081 0.1409 REMARK 3 25 1.3453 - 1.3271 0.99 5039 236 0.1177 0.1564 REMARK 3 26 1.3271 - 1.3099 0.99 4964 249 0.1218 0.1605 REMARK 3 27 1.3099 - 1.2935 0.98 4894 300 0.1256 0.1578 REMARK 3 28 1.2935 - 1.2779 0.98 5028 206 0.1294 0.1526 REMARK 3 29 1.2779 - 1.2631 0.98 4928 272 0.1401 0.1540 REMARK 3 30 1.2631 - 1.2500 0.92 4656 236 0.1558 0.1847 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.070 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 10.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4593 REMARK 3 ANGLE : 1.226 6271 REMARK 3 CHIRALITY : 0.079 666 REMARK 3 PLANARITY : 0.006 820 REMARK 3 DIHEDRAL : 13.499 1704 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4S28 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000088087. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 158556 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.33300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4N7Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NA ACETATE, PH5.3-5.6, 1 REMARK 280 -9%(V/V) 1,4 BUTANEDIOL, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.45133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.22567 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.22567 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.45133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -169.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 87.67700 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1223 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 69 REMARK 465 HIS A 70 REMARK 465 MET A 71 REMARK 465 LYS A 72 REMARK 465 HIS A 73 REMARK 465 THR A 74 REMARK 465 ILE A 75 REMARK 465 ASP A 76 REMARK 465 PRO A 77 REMARK 465 SER A 78 REMARK 465 GLU A 599 REMARK 465 GLU A 600 REMARK 465 ALA A 601 REMARK 465 ILE A 602 REMARK 465 ARG A 603 REMARK 465 GLN A 604 REMARK 465 GLY A 605 REMARK 465 MET A 606 REMARK 465 ASP A 607 REMARK 465 ALA A 608 REMARK 465 MET A 609 REMARK 465 SER A 610 REMARK 465 GLU A 611 REMARK 465 GLU A 612 REMARK 465 PHE A 613 REMARK 465 ASN A 614 REMARK 465 ILE A 615 REMARK 465 ALA A 616 REMARK 465 LYS A 617 REMARK 465 LYS A 618 REMARK 465 THR A 619 REMARK 465 ILE A 620 REMARK 465 SER A 621 REMARK 465 GLY A 622 REMARK 465 GLU A 623 REMARK 465 GLN A 624 REMARK 465 HIS A 625 REMARK 465 GLY A 626 REMARK 465 GLU A 627 REMARK 465 VAL A 628 REMARK 465 GLY A 629 REMARK 465 GLY A 630 REMARK 465 GLU A 631 REMARK 465 ILE A 632 REMARK 465 TYR A 633 REMARK 465 LEU A 634 REMARK 465 PRO A 635 REMARK 465 GLU A 636 REMARK 465 SER A 637 REMARK 465 TYR A 638 REMARK 465 VAL A 639 REMARK 465 LYS A 640 REMARK 465 ALA A 641 REMARK 465 ALA A 642 REMARK 465 GLN A 643 REMARK 465 LYS A 644 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 79 OG REMARK 470 GLN A 83 CG CD OE1 NE2 REMARK 470 ARG A 263 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 94 -0.53 77.04 REMARK 500 SER A 205 63.41 -160.78 REMARK 500 SER A 236 -176.88 84.52 REMARK 500 ASP A 376 65.82 62.34 REMARK 500 ASP A 383 78.44 -116.56 REMARK 500 HIS A 521 -5.85 75.52 REMARK 500 HIS A 568 55.32 -91.32 REMARK 500 PHE A 569 172.17 178.33 REMARK 500 ASN A 593 -9.51 -158.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 704 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 426 NE2 REMARK 620 2 HIS A 490 NE2 97.5 REMARK 620 3 SAH A 703 OXT 93.3 168.1 REMARK 620 4 SAH A 703 OXT 98.7 163.6 6.1 REMARK 620 5 SAH A 703 N 174.1 88.4 80.9 75.4 REMARK 620 6 SAH A 703 N 171.9 90.6 78.7 73.2 2.2 REMARK 620 7 HOH A1194 O 90.4 89.2 85.7 88.4 90.1 90.2 REMARK 620 8 HOH A1195 O 86.6 91.6 94.0 91.7 92.8 92.7 177.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 701 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 570 SG REMARK 620 2 SF4 A 701 S2 124.2 REMARK 620 3 SF4 A 701 S3 100.6 107.2 REMARK 620 4 SF4 A 701 S4 118.2 101.2 103.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 701 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 573 SG REMARK 620 2 SF4 A 701 S1 120.8 REMARK 620 3 SF4 A 701 S3 127.4 101.2 REMARK 620 4 SF4 A 701 S4 97.1 104.5 101.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 701 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 578 SG REMARK 620 2 SF4 A 701 S1 108.6 REMARK 620 3 SF4 A 701 S2 123.8 104.8 REMARK 620 4 SF4 A 701 S4 109.4 108.2 101.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AIR A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 A 707 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4N7Q RELATED DB: PDB REMARK 900 RELATED ID: 3EPM RELATED DB: PDB REMARK 900 RELATED ID: 3EPN RELATED DB: PDB REMARK 900 RELATED ID: 3EPO RELATED DB: PDB REMARK 900 RELATED ID: 4S25 RELATED DB: PDB REMARK 900 RELATED ID: 4S26 RELATED DB: PDB REMARK 900 RELATED ID: 4S27 RELATED DB: PDB REMARK 900 RELATED ID: 4S29 RELATED DB: PDB REMARK 900 RELATED ID: 4S2A RELATED DB: PDB DBREF 4S28 A 72 644 UNP O82392 THIC_ARATH 72 644 SEQADV 4S28 GLY A 69 UNP O82392 EXPRESSION TAG SEQADV 4S28 HIS A 70 UNP O82392 EXPRESSION TAG SEQADV 4S28 MET A 71 UNP O82392 EXPRESSION TAG SEQRES 1 A 576 GLY HIS MET LYS HIS THR ILE ASP PRO SER SER PRO ASP SEQRES 2 A 576 PHE GLN PRO ILE PRO SER PHE GLU GLU CYS PHE PRO LYS SEQRES 3 A 576 SER THR LYS GLU HIS LYS GLU VAL VAL HIS GLU GLU SER SEQRES 4 A 576 GLY HIS VAL LEU LYS VAL PRO PHE ARG ARG VAL HIS LEU SEQRES 5 A 576 SER GLY GLY GLU PRO ALA PHE ASP ASN TYR ASP THR SER SEQRES 6 A 576 GLY PRO GLN ASN VAL ASN ALA HIS ILE GLY LEU ALA LYS SEQRES 7 A 576 LEU ARG LYS GLU TRP ILE ASP ARG ARG GLU LYS LEU GLY SEQRES 8 A 576 THR PRO ARG TYR THR GLN MET TYR TYR ALA LYS GLN GLY SEQRES 9 A 576 ILE ILE THR GLU GLU MET LEU TYR CYS ALA THR ARG GLU SEQRES 10 A 576 LYS LEU ASP PRO GLU PHE VAL ARG SER GLU VAL ALA ARG SEQRES 11 A 576 GLY ARG ALA ILE ILE PRO SER ASN LYS LYS HIS LEU GLU SEQRES 12 A 576 LEU GLU PRO MET ILE VAL GLY ARG LYS PHE LEU VAL LYS SEQRES 13 A 576 VAL ASN ALA ASN ILE GLY ASN SER ALA VAL ALA SER SER SEQRES 14 A 576 ILE GLU GLU GLU VAL TYR LYS VAL GLN TRP ALA THR MET SEQRES 15 A 576 TRP GLY ALA ASP THR ILE MET ASP LEU SER THR GLY ARG SEQRES 16 A 576 HIS ILE HIS GLU THR ARG GLU TRP ILE LEU ARG ASN SER SEQRES 17 A 576 ALA VAL PRO VAL GLY THR VAL PRO ILE TYR GLN ALA LEU SEQRES 18 A 576 GLU LYS VAL ASP GLY ILE ALA GLU ASN LEU ASN TRP GLU SEQRES 19 A 576 VAL PHE ARG GLU THR LEU ILE GLU GLN ALA GLU GLN GLY SEQRES 20 A 576 VAL ASP TYR PHE THR ILE HIS ALA GLY VAL LEU LEU ARG SEQRES 21 A 576 TYR ILE PRO LEU THR ALA LYS ARG LEU THR GLY ILE VAL SEQRES 22 A 576 SER ARG GLY GLY SER ILE HIS ALA LYS TRP CYS LEU ALA SEQRES 23 A 576 TYR HIS LYS GLU ASN PHE ALA TYR GLU HIS TRP ASP ASP SEQRES 24 A 576 ILE LEU ASP ILE CYS ASN GLN TYR ASP VAL ALA LEU SER SEQRES 25 A 576 ILE GLY ASP GLY LEU ARG PRO GLY SER ILE TYR ASP ALA SEQRES 26 A 576 ASN ASP THR ALA GLN PHE ALA GLU LEU LEU THR GLN GLY SEQRES 27 A 576 GLU LEU THR ARG ARG ALA TRP GLU LYS ASP VAL GLN VAL SEQRES 28 A 576 MET ASN GLU GLY PRO GLY HIS VAL PRO MET HIS LYS ILE SEQRES 29 A 576 PRO GLU ASN MET GLN LYS GLN LEU GLU TRP CYS ASN GLU SEQRES 30 A 576 ALA PRO PHE TYR THR LEU GLY PRO LEU THR THR ASP ILE SEQRES 31 A 576 ALA PRO GLY TYR ASP HIS ILE THR SER ALA ILE GLY ALA SEQRES 32 A 576 ALA ASN ILE GLY ALA LEU GLY THR ALA LEU LEU CYS TYR SEQRES 33 A 576 VAL THR PRO LYS GLU HIS LEU GLY LEU PRO ASN ARG ASP SEQRES 34 A 576 ASP VAL LYS ALA GLY VAL ILE ALA TYR LYS ILE ALA ALA SEQRES 35 A 576 HIS ALA ALA ASP LEU ALA LYS GLN HIS PRO HIS ALA GLN SEQRES 36 A 576 ALA TRP ASP ASP ALA LEU SER LYS ALA ARG PHE GLU PHE SEQRES 37 A 576 ARG TRP MET ASP GLN PHE ALA LEU SER LEU ASP PRO MET SEQRES 38 A 576 THR ALA MET SER PHE HIS ASP GLU THR LEU PRO ALA ASP SEQRES 39 A 576 GLY ALA LYS VAL ALA HIS PHE CYS SER MET CYS GLY PRO SEQRES 40 A 576 LYS PHE CYS SER MET LYS ILE THR GLU ASP ILE ARG LYS SEQRES 41 A 576 TYR ALA GLU GLU ASN GLY TYR GLY SER ALA GLU GLU ALA SEQRES 42 A 576 ILE ARG GLN GLY MET ASP ALA MET SER GLU GLU PHE ASN SEQRES 43 A 576 ILE ALA LYS LYS THR ILE SER GLY GLU GLN HIS GLY GLU SEQRES 44 A 576 VAL GLY GLY GLU ILE TYR LEU PRO GLU SER TYR VAL LYS SEQRES 45 A 576 ALA ALA GLN LYS HET SF4 A 701 8 HET AIR A 702 19 HET SAH A 703 52 HET FE2 A 704 1 HET CL A 705 1 HET BU1 A 706 6 HET BU1 A 707 6 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM AIR 5-AMINOIMIDAZOLE RIBONUCLEOTIDE HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM FE2 FE (II) ION HETNAM CL CHLORIDE ION HETNAM BU1 1,4-BUTANEDIOL FORMUL 2 SF4 FE4 S4 FORMUL 3 AIR C8 H14 N3 O7 P FORMUL 4 SAH C14 H20 N6 O5 S FORMUL 5 FE2 FE 2+ FORMUL 6 CL CL 1- FORMUL 7 BU1 2(C4 H10 O2) FORMUL 9 HOH *549(H2 O) HELIX 1 1 SER A 87 PHE A 92 1 6 HELIX 2 2 ARG A 148 GLY A 159 1 12 HELIX 3 3 THR A 164 GLN A 171 1 8 HELIX 4 4 THR A 175 LYS A 186 1 12 HELIX 5 5 ASP A 188 ARG A 198 1 11 HELIX 6 6 SER A 237 TRP A 251 1 15 HELIX 7 7 HIS A 264 ASN A 275 1 12 HELIX 8 8 VAL A 283 VAL A 292 1 10 HELIX 9 9 ILE A 295 LEU A 299 5 5 HELIX 10 10 ASN A 300 GLY A 315 1 16 HELIX 11 11 LEU A 326 ALA A 334 5 9 HELIX 12 12 SER A 342 HIS A 356 1 15 HELIX 13 13 ASN A 359 HIS A 364 1 6 HELIX 14 14 HIS A 364 ASP A 376 1 13 HELIX 15 15 SER A 389 ALA A 393 5 5 HELIX 16 16 ASP A 395 LYS A 415 1 21 HELIX 17 17 PRO A 428 HIS A 430 5 3 HELIX 18 18 LYS A 431 CYS A 443 1 13 HELIX 19 19 TYR A 462 LEU A 477 1 16 HELIX 20 20 ASN A 495 LYS A 517 1 23 HELIX 21 21 ALA A 522 GLU A 535 1 14 HELIX 22 22 ARG A 537 SER A 545 1 9 HELIX 23 23 ASP A 547 GLU A 557 1 11 HELIX 24 24 ALA A 561 ALA A 567 5 7 HELIX 25 25 CYS A 578 GLU A 591 1 14 SHEET 1 A 3 SER A 95 HIS A 104 0 SHEET 2 A 3 HIS A 109 VAL A 118 -1 O LEU A 111 N VAL A 102 SHEET 3 A 3 PHE A 127 ASN A 129 -1 O PHE A 127 N VAL A 118 SHEET 1 B 2 ALA A 201 ILE A 202 0 SHEET 2 B 2 VAL A 217 GLY A 218 -1 O VAL A 217 N ILE A 202 SHEET 1 C 9 LYS A 224 ILE A 229 0 SHEET 2 C 9 THR A 255 ASP A 258 1 O MET A 257 N ILE A 229 SHEET 3 C 9 VAL A 280 THR A 282 1 O GLY A 281 N ILE A 256 SHEET 4 C 9 TYR A 318 ILE A 321 1 O THR A 320 N THR A 282 SHEET 5 C 9 ALA A 378 ILE A 381 1 O SER A 380 N PHE A 319 SHEET 6 C 9 VAL A 419 GLY A 423 1 O GLU A 422 N ILE A 381 SHEET 7 C 9 PHE A 448 LEU A 451 1 O TYR A 449 N GLY A 423 SHEET 8 C 9 LEU A 481 CYS A 483 1 O CYS A 483 N THR A 450 SHEET 9 C 9 LYS A 224 ILE A 229 1 N LYS A 224 O LEU A 482 LINK NE2 HIS A 426 FE FE2 A 704 1555 1555 2.17 LINK NE2 HIS A 490 FE FE2 A 704 1555 1555 2.16 LINK SG CYS A 570 FE1 SF4 A 701 1555 1555 2.28 LINK SG CYS A 573 FE2 SF4 A 701 1555 1555 2.33 LINK SG CYS A 578 FE3 SF4 A 701 1555 1555 2.29 LINK OXTASAH A 703 FE FE2 A 704 1555 1555 2.03 LINK OXTBSAH A 703 FE FE2 A 704 1555 1555 2.12 LINK N BSAH A 703 FE FE2 A 704 1555 1555 2.19 LINK N ASAH A 703 FE FE2 A 704 1555 1555 2.36 LINK FE FE2 A 704 O HOH A1194 1555 1555 2.19 LINK FE FE2 A 704 O HOH A1195 1555 1555 2.17 CISPEP 1 PRO A 424 GLY A 425 0 12.39 CISPEP 2 GLY A 452 PRO A 453 0 12.44 SITE 1 AC1 7 CYS A 570 MET A 572 CYS A 573 CYS A 578 SITE 2 AC1 7 SER A 579 SAH A 703 CL A 705 SITE 1 AC2 17 ASN A 228 MET A 257 LEU A 259 TYR A 286 SITE 2 AC2 17 THR A 320 HIS A 322 SER A 342 ARG A 343 SITE 3 AC2 17 GLY A 344 ASP A 383 ARG A 386 GLU A 422 SITE 4 AC2 17 GLY A 423 TYR A 449 CYS A 483 SAH A 703 SITE 5 AC2 17 HOH A 880 SITE 1 AC3 26 ASN A 228 ILE A 229 GLY A 230 ASN A 231 SITE 2 AC3 26 LEU A 259 VAL A 341 ARG A 343 ARG A 386 SITE 3 AC3 26 HIS A 426 LEU A 451 GLU A 489 HIS A 490 SITE 4 AC3 26 LEU A 493 PRO A 494 MET A 572 CYS A 573 SITE 5 AC3 26 SF4 A 701 AIR A 702 FE2 A 704 HOH A 863 SITE 6 AC3 26 HOH A 864 HOH A 871 HOH A 876 HOH A 923 SITE 7 AC3 26 HOH A1194 HOH A1195 SITE 1 AC4 5 HIS A 426 HIS A 490 SAH A 703 HOH A1194 SITE 2 AC4 5 HOH A1195 SITE 1 AC5 2 HIS A 490 SF4 A 701 SITE 1 AC6 2 ARG A 305 HOH A 867 SITE 1 AC7 7 VAL A 113 PRO A 114 PHE A 115 ASP A 128 SITE 2 AC7 7 THR A 183 ARG A 184 HOH A 826 CRYST1 107.071 107.071 87.677 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009340 0.005392 0.000000 0.00000 SCALE2 0.000000 0.010784 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011405 0.00000