HEADER HYDROLASE/RNA 23-JAN-15 4S2X TITLE STRUCTURE OF E. COLI RPPH BOUND TO RNA AND TWO MAGNESIUM IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA PYROPHOSPHOHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: (DI)NUCLEOSIDE POLYPHOSPHATE HYDROLASE, AP5A COMPND 5 PYROPHOSPHATASE; COMPND 6 EC: 3.6.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RNA (5'-R(*(APC)*GP*U)-3'); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: RPPH, NUDH, YGDP, B2830, JW2798; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 OTHER_DETAILS: PREPARED BY IN VITRO TRANSCRIPTION KEYWDS NUDIX HYDROLASE, RNA PYROPHOSPHOHYDROLASE, HYDROLASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.VASILYEV,A.SERGANOV REVDAT 4 20-SEP-23 4S2X 1 REMARK SEQADV LINK REVDAT 3 06-MAY-15 4S2X 1 JRNL REVDAT 2 25-FEB-15 4S2X 1 JRNL REVDAT 1 11-FEB-15 4S2X 0 JRNL AUTH N.VASILYEV,A.SERGANOV JRNL TITL STRUCTURES OF RNA COMPLEXES WITH THE ESCHERICHIA COLI RNA JRNL TITL 2 PYROPHOSPHOHYDROLASE RPPH UNVEIL THE BASIS FOR SPECIFIC JRNL TITL 3 5'-END-DEPENDENT MRNA DECAY. JRNL REF J.BIOL.CHEM. V. 290 9487 2015 JRNL REFN ISSN 0021-9258 JRNL PMID 25657011 JRNL DOI 10.1074/JBC.M114.634824 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 24889 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1310 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1695 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.4500 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.3920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1261 REMARK 3 NUCLEIC ACID ATOMS : 54 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 109 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.85000 REMARK 3 B22 (A**2) : 1.48000 REMARK 3 B33 (A**2) : -0.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.82000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.106 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.851 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1433 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1969 ; 0.998 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 171 ; 6.360 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 69 ;33.797 ;23.478 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 218 ;11.022 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;19.752 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 202 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1112 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1432 ; 2.741 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 33 ;28.598 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1468 ;18.384 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4S2X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000088112. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : SI-111 DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26252 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.59600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.650 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4S2W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTAL GROWTH: 0.4 M AMMONIUM REMARK 280 SULFATE, 12% PEG 3350, 10%GLYCEROL. CRYSTAL SOAKING: 0.05 M MOPS- REMARK 280 NA PH 7.0, 0.05 M AMMONIUM SULFATE, 0.05 M MAGNESIUM CHLORIDE, REMARK 280 15% PEG3350 AND 25% PENTAERYTHRITOL PROPOXYLATE 5/4 PO/OH, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 39.24950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.43400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 39.24950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.43400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TRP A 87 REMARK 465 ASP A 88 REMARK 465 THR A 89 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 20 CG CD OE1 NE2 REMARK 470 LYS A 64 CD CE NZ REMARK 470 ARG A 73 CD NE CZ NH1 NH2 REMARK 470 LYS A 79 CG CD CE NZ REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 ARG A 83 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 86 CD NE CZ NH1 NH2 REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 ARG A 135 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 150 CG CD CE NZ REMARK 470 APC B 1 PG O1G O2G O3G REMARK 470 U B 3 C5' C4' O4' C3' O3' C2' O2' REMARK 470 U B 3 C1' N1 C2 O2 N3 C4 O4 REMARK 470 U B 3 C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 18 -164.29 -113.33 REMARK 500 ASN A 74 -166.56 -116.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 38 O REMARK 620 2 GLU A 58 OE2 83.4 REMARK 620 3 GLU A 121 OE1 172.9 92.5 REMARK 620 4 GLU A 121 OE2 89.5 89.2 84.6 REMARK 620 5 APC B 1 O1B 92.0 80.1 93.0 168.9 REMARK 620 6 HOH B 102 O 92.6 176.0 91.5 90.6 100.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 54 OE1 REMARK 620 2 GLU A 54 OE1 41.7 REMARK 620 3 GLU A 57 OE1 83.5 86.1 REMARK 620 4 GLU A 58 OE2 80.4 40.0 102.0 REMARK 620 5 GLU A 121 OE2 169.6 133.2 87.2 97.2 REMARK 620 6 SO4 A 204 O2 64.9 104.5 103.1 133.8 122.0 REMARK 620 7 HOH A 374 O 99.7 137.3 68.6 170.5 81.0 52.9 REMARK 620 8 APC B 1 O1B 97.2 99.3 172.6 85.3 92.6 70.8 104.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4S2V RELATED DB: PDB REMARK 900 RELATED ID: 4S2W RELATED DB: PDB REMARK 900 RELATED ID: 4S2Y RELATED DB: PDB DBREF 4S2X A 2 161 UNP P0A776 RPPH_ECOLI 1 160 DBREF 4S2X B 1 3 PDB 4S2X 4S2X 1 3 SEQADV 4S2X SER A 1 UNP P0A776 EXPRESSION TAG SEQADV 4S2X ALA A 160 UNP P0A776 GLN 159 ENGINEERED MUTATION SEQADV 4S2X ALA A 161 UNP P0A776 GLU 160 ENGINEERED MUTATION SEQRES 1 A 161 SER MET ILE ASP ASP ASP GLY TYR ARG PRO ASN VAL GLY SEQRES 2 A 161 ILE VAL ILE CYS ASN ARG GLN GLY GLN VAL MET TRP ALA SEQRES 3 A 161 ARG ARG PHE GLY GLN HIS SER TRP GLN PHE PRO GLN GLY SEQRES 4 A 161 GLY ILE ASN PRO GLY GLU SER ALA GLU GLN ALA MET TYR SEQRES 5 A 161 ARG GLU LEU PHE GLU GLU VAL GLY LEU SER ARG LYS ASP SEQRES 6 A 161 VAL ARG ILE LEU ALA SER THR ARG ASN TRP LEU ARG TYR SEQRES 7 A 161 LYS LEU PRO LYS ARG LEU VAL ARG TRP ASP THR LYS PRO SEQRES 8 A 161 VAL CYS ILE GLY GLN LYS GLN LYS TRP PHE LEU LEU GLN SEQRES 9 A 161 LEU VAL SER GLY ASP ALA GLU ILE ASN MET GLN THR SER SEQRES 10 A 161 SER THR PRO GLU PHE ASP GLY TRP ARG TRP VAL SER TYR SEQRES 11 A 161 TRP TYR PRO VAL ARG GLN VAL VAL SER PHE LYS ARG ASP SEQRES 12 A 161 VAL TYR ARG ARG VAL MET LYS GLU PHE ALA SER VAL VAL SEQRES 13 A 161 MET SER LEU ALA ALA SEQRES 1 B 3 APC G U HET APC B 1 27 HET MG A 201 1 HET MG A 202 1 HET SO4 A 203 5 HET SO4 A 204 5 HETNAM APC DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETSYN APC ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE FORMUL 2 APC C11 H18 N5 O12 P3 FORMUL 3 MG 2(MG 2+) FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *109(H2 O) HELIX 1 1 SER A 46 GLY A 60 1 15 HELIX 2 2 SER A 62 LYS A 64 5 3 HELIX 3 3 PRO A 81 VAL A 85 5 5 HELIX 4 4 GLY A 108 ILE A 112 5 5 HELIX 5 5 TRP A 131 VAL A 137 1 7 HELIX 6 6 VAL A 138 PHE A 140 5 3 HELIX 7 7 LYS A 141 ALA A 161 1 21 SHEET 1 A 4 GLN A 38 GLY A 40 0 SHEET 2 A 4 TYR A 8 CYS A 17 -1 N VAL A 12 O GLY A 39 SHEET 3 A 4 GLY A 95 LEU A 105 1 O LEU A 103 N CYS A 17 SHEET 4 A 4 VAL A 66 SER A 71 -1 N LEU A 69 O LEU A 102 SHEET 1 B 4 GLN A 38 GLY A 40 0 SHEET 2 B 4 TYR A 8 CYS A 17 -1 N VAL A 12 O GLY A 39 SHEET 3 B 4 GLY A 95 LEU A 105 1 O LEU A 103 N CYS A 17 SHEET 4 B 4 LEU A 76 LYS A 79 -1 N LEU A 76 O GLN A 98 SHEET 1 C 3 TRP A 34 GLN A 35 0 SHEET 2 C 3 GLN A 22 ARG A 28 -1 N ALA A 26 O GLN A 35 SHEET 3 C 3 PHE A 122 SER A 129 -1 O ARG A 126 N TRP A 25 LINK O3' APC B 1 P G B 2 1555 1555 1.61 LINK O GLN A 38 MG MG A 202 1555 1555 1.97 LINK OE1AGLU A 54 MG MG A 201 1555 1555 2.45 LINK OE1BGLU A 54 MG MG A 201 1555 1555 2.74 LINK OE1AGLU A 57 MG MG A 201 1555 1555 2.18 LINK OE2AGLU A 58 MG MG A 201 1555 1555 2.06 LINK OE2AGLU A 58 MG MG A 202 1555 1555 2.38 LINK OE2AGLU A 121 MG MG A 201 1555 1555 1.87 LINK OE1AGLU A 121 MG MG A 202 1555 1555 2.00 LINK OE2BGLU A 121 MG MG A 202 1555 1555 2.71 LINK MG MG A 201 O2 SO4 A 204 1555 1555 2.92 LINK MG MG A 201 O HOH A 374 1555 1555 2.64 LINK MG MG A 201 O1B APC B 1 1555 1555 2.07 LINK MG MG A 202 O1B APC B 1 1555 1555 1.93 LINK MG MG A 202 O HOH B 102 1555 1555 1.98 CISPEP 1 LYS A 90 PRO A 91 0 -2.17 SITE 1 AC1 8 GLU A 54 GLU A 57 GLU A 58 GLU A 121 SITE 2 AC1 8 MG A 202 SO4 A 204 HOH A 374 APC B 1 SITE 1 AC2 6 GLN A 38 GLU A 58 GLU A 121 MG A 201 SITE 2 AC2 6 APC B 1 HOH B 102 SITE 1 AC3 4 ASN A 18 ARG A 19 GLN A 20 HOH A 332 SITE 1 AC4 9 ARG A 9 GLY A 40 ARG A 53 GLU A 54 SITE 2 AC4 9 GLU A 57 MG A 201 HOH A 374 HOH A 381 SITE 3 AC4 9 APC B 1 CRYST1 78.499 38.868 57.201 90.00 100.13 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012739 0.000000 0.002275 0.00000 SCALE2 0.000000 0.025728 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017759 0.00000