HEADER UNKNOWN FUNCTION 26-JAN-15 4S3H TITLE CRYSTAL STRUCTURE OF S. POMBE MDB1 FHA DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MDB1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: FHA DOMAIN, UNP RESIDUES 1-104; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE 972H-; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 284812; SOURCE 5 STRAIN: 972; SOURCE 6 ATCC: 24843; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS MDB1, FORKHEAD-ASSOCIATED DOMAIN (FHA DOMAIN), DIMERIZATION, UNKNOWN KEYWDS 2 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR S.LUO,K.YE REVDAT 4 28-FEB-24 4S3H 1 REMARK SEQADV REVDAT 3 22-NOV-17 4S3H 1 REMARK REVDAT 2 06-JAN-16 4S3H 1 JRNL REVDAT 1 22-JUL-15 4S3H 0 JRNL AUTH S.LUO,X.XIN,L.L.DU,K.YE,Y.WEI JRNL TITL DIMERIZATION MEDIATED BY A DIVERGENT FORKHEAD-ASSOCIATED JRNL TITL 2 DOMAIN IS ESSENTIAL FOR THE DNA DAMAGE AND SPINDLE FUNCTIONS JRNL TITL 3 OF FISSION YEAST MDB1. JRNL REF J.BIOL.CHEM. V. 290 21054 2015 JRNL REFN ISSN 0021-9258 JRNL PMID 26160178 JRNL DOI 10.1074/JBC.M115.642538 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 15820 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 804 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4S3H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000088132. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BSRF REMARK 200 BEAMLINE : 3W1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15871 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 0.67300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, PH 5.2, 1.8 M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 149.66867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.83433 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 112.25150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 37.41717 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 187.08583 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 149.66867 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 74.83433 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 37.41717 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 112.25150 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 187.08583 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 LEU A -8 REMARK 465 GLU A -7 REMARK 465 VAL A -6 REMARK 465 LEU A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 HIS A 0 REMARK 465 GLY A 23 REMARK 465 SER A 24 REMARK 465 HIS A 25 REMARK 465 LEU A 92 REMARK 465 GLU A 93 REMARK 465 GLU A 94 REMARK 465 ASP A 95 REMARK 465 ASN A 96 REMARK 465 ALA A 97 REMARK 465 ASN A 98 REMARK 465 VAL A 99 REMARK 465 ASN A 100 REMARK 465 GLU A 101 REMARK 465 GLY A 102 REMARK 465 SER A 103 REMARK 465 LYS A 104 REMARK 465 MET B -21 REMARK 465 GLY B -20 REMARK 465 SER B -19 REMARK 465 SER B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 SER B -11 REMARK 465 SER B -10 REMARK 465 GLY B -9 REMARK 465 LEU B -8 REMARK 465 GLU B -7 REMARK 465 VAL B -6 REMARK 465 LEU B -5 REMARK 465 PHE B -4 REMARK 465 GLN B -3 REMARK 465 GLY B -2 REMARK 465 PRO B -1 REMARK 465 HIS B 0 REMARK 465 VAL B 13 REMARK 465 ASN B 14 REMARK 465 LEU B 92 REMARK 465 GLU B 93 REMARK 465 GLU B 94 REMARK 465 ASP B 95 REMARK 465 ASN B 96 REMARK 465 ALA B 97 REMARK 465 ASN B 98 REMARK 465 VAL B 99 REMARK 465 ASN B 100 REMARK 465 GLU B 101 REMARK 465 GLY B 102 REMARK 465 SER B 103 REMARK 465 LYS B 104 REMARK 465 MET C -21 REMARK 465 GLY C -20 REMARK 465 SER C -19 REMARK 465 SER C -18 REMARK 465 HIS C -17 REMARK 465 HIS C -16 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 HIS C -12 REMARK 465 SER C -11 REMARK 465 SER C -10 REMARK 465 GLY C -9 REMARK 465 LEU C -8 REMARK 465 GLU C -7 REMARK 465 VAL C -6 REMARK 465 LEU C -5 REMARK 465 PHE C -4 REMARK 465 GLN C -3 REMARK 465 GLY C -2 REMARK 465 PRO C -1 REMARK 465 HIS C 0 REMARK 465 LYS C 91 REMARK 465 LEU C 92 REMARK 465 GLU C 93 REMARK 465 GLU C 94 REMARK 465 ASP C 95 REMARK 465 ASN C 96 REMARK 465 ALA C 97 REMARK 465 ASN C 98 REMARK 465 VAL C 99 REMARK 465 ASN C 100 REMARK 465 GLU C 101 REMARK 465 GLY C 102 REMARK 465 SER C 103 REMARK 465 LYS C 104 REMARK 465 MET D -21 REMARK 465 GLY D -20 REMARK 465 SER D -19 REMARK 465 SER D -18 REMARK 465 HIS D -17 REMARK 465 HIS D -16 REMARK 465 HIS D -15 REMARK 465 HIS D -14 REMARK 465 HIS D -13 REMARK 465 HIS D -12 REMARK 465 SER D -11 REMARK 465 SER D -10 REMARK 465 GLY D -9 REMARK 465 LEU D -8 REMARK 465 GLU D -7 REMARK 465 VAL D -6 REMARK 465 LEU D -5 REMARK 465 PHE D -4 REMARK 465 GLN D -3 REMARK 465 GLY D -2 REMARK 465 PRO D -1 REMARK 465 HIS D 0 REMARK 465 LYS D 91 REMARK 465 LEU D 92 REMARK 465 GLU D 93 REMARK 465 GLU D 94 REMARK 465 ASP D 95 REMARK 465 ASN D 96 REMARK 465 ALA D 97 REMARK 465 ASN D 98 REMARK 465 VAL D 99 REMARK 465 ASN D 100 REMARK 465 GLU D 101 REMARK 465 GLY D 102 REMARK 465 SER D 103 REMARK 465 LYS D 104 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY C 23 O HOH C 204 2.05 REMARK 500 OG1 THR D 31 OD1 ASP D 33 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 306 O HOH A 306 10666 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU D 2 CB GLU D 2 CG -0.129 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET C 1 CB - CG - SD ANGL. DEV. = 25.7 DEGREES REMARK 500 GLU D 2 N - CA - C ANGL. DEV. = 17.1 DEGREES REMARK 500 ARG D 11 CB - CG - CD ANGL. DEV. = 17.5 DEGREES REMARK 500 ARG D 11 CG - CD - NE ANGL. DEV. = 15.4 DEGREES REMARK 500 ARG D 11 NE - CZ - NH1 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG D 11 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 15 -3.56 62.78 REMARK 500 ALA A 57 -121.21 50.74 REMARK 500 ARG B 51 15.56 -141.09 REMARK 500 ALA B 57 -120.29 53.80 REMARK 500 SER C 15 -24.18 63.00 REMARK 500 ALA C 57 -117.71 52.69 REMARK 500 ASN D 14 -138.19 -140.79 REMARK 500 LEU D 26 127.61 -34.75 REMARK 500 ALA D 57 -120.84 52.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 201 DBREF 4S3H A 1 104 UNP O14079 MDB1_SCHPO 1 104 DBREF 4S3H B 1 104 UNP O14079 MDB1_SCHPO 1 104 DBREF 4S3H C 1 104 UNP O14079 MDB1_SCHPO 1 104 DBREF 4S3H D 1 104 UNP O14079 MDB1_SCHPO 1 104 SEQADV 4S3H MET A -21 UNP O14079 EXPRESSION TAG SEQADV 4S3H GLY A -20 UNP O14079 EXPRESSION TAG SEQADV 4S3H SER A -19 UNP O14079 EXPRESSION TAG SEQADV 4S3H SER A -18 UNP O14079 EXPRESSION TAG SEQADV 4S3H HIS A -17 UNP O14079 EXPRESSION TAG SEQADV 4S3H HIS A -16 UNP O14079 EXPRESSION TAG SEQADV 4S3H HIS A -15 UNP O14079 EXPRESSION TAG SEQADV 4S3H HIS A -14 UNP O14079 EXPRESSION TAG SEQADV 4S3H HIS A -13 UNP O14079 EXPRESSION TAG SEQADV 4S3H HIS A -12 UNP O14079 EXPRESSION TAG SEQADV 4S3H SER A -11 UNP O14079 EXPRESSION TAG SEQADV 4S3H SER A -10 UNP O14079 EXPRESSION TAG SEQADV 4S3H GLY A -9 UNP O14079 EXPRESSION TAG SEQADV 4S3H LEU A -8 UNP O14079 EXPRESSION TAG SEQADV 4S3H GLU A -7 UNP O14079 EXPRESSION TAG SEQADV 4S3H VAL A -6 UNP O14079 EXPRESSION TAG SEQADV 4S3H LEU A -5 UNP O14079 EXPRESSION TAG SEQADV 4S3H PHE A -4 UNP O14079 EXPRESSION TAG SEQADV 4S3H GLN A -3 UNP O14079 EXPRESSION TAG SEQADV 4S3H GLY A -2 UNP O14079 EXPRESSION TAG SEQADV 4S3H PRO A -1 UNP O14079 EXPRESSION TAG SEQADV 4S3H HIS A 0 UNP O14079 EXPRESSION TAG SEQADV 4S3H MET B -21 UNP O14079 EXPRESSION TAG SEQADV 4S3H GLY B -20 UNP O14079 EXPRESSION TAG SEQADV 4S3H SER B -19 UNP O14079 EXPRESSION TAG SEQADV 4S3H SER B -18 UNP O14079 EXPRESSION TAG SEQADV 4S3H HIS B -17 UNP O14079 EXPRESSION TAG SEQADV 4S3H HIS B -16 UNP O14079 EXPRESSION TAG SEQADV 4S3H HIS B -15 UNP O14079 EXPRESSION TAG SEQADV 4S3H HIS B -14 UNP O14079 EXPRESSION TAG SEQADV 4S3H HIS B -13 UNP O14079 EXPRESSION TAG SEQADV 4S3H HIS B -12 UNP O14079 EXPRESSION TAG SEQADV 4S3H SER B -11 UNP O14079 EXPRESSION TAG SEQADV 4S3H SER B -10 UNP O14079 EXPRESSION TAG SEQADV 4S3H GLY B -9 UNP O14079 EXPRESSION TAG SEQADV 4S3H LEU B -8 UNP O14079 EXPRESSION TAG SEQADV 4S3H GLU B -7 UNP O14079 EXPRESSION TAG SEQADV 4S3H VAL B -6 UNP O14079 EXPRESSION TAG SEQADV 4S3H LEU B -5 UNP O14079 EXPRESSION TAG SEQADV 4S3H PHE B -4 UNP O14079 EXPRESSION TAG SEQADV 4S3H GLN B -3 UNP O14079 EXPRESSION TAG SEQADV 4S3H GLY B -2 UNP O14079 EXPRESSION TAG SEQADV 4S3H PRO B -1 UNP O14079 EXPRESSION TAG SEQADV 4S3H HIS B 0 UNP O14079 EXPRESSION TAG SEQADV 4S3H MET C -21 UNP O14079 EXPRESSION TAG SEQADV 4S3H GLY C -20 UNP O14079 EXPRESSION TAG SEQADV 4S3H SER C -19 UNP O14079 EXPRESSION TAG SEQADV 4S3H SER C -18 UNP O14079 EXPRESSION TAG SEQADV 4S3H HIS C -17 UNP O14079 EXPRESSION TAG SEQADV 4S3H HIS C -16 UNP O14079 EXPRESSION TAG SEQADV 4S3H HIS C -15 UNP O14079 EXPRESSION TAG SEQADV 4S3H HIS C -14 UNP O14079 EXPRESSION TAG SEQADV 4S3H HIS C -13 UNP O14079 EXPRESSION TAG SEQADV 4S3H HIS C -12 UNP O14079 EXPRESSION TAG SEQADV 4S3H SER C -11 UNP O14079 EXPRESSION TAG SEQADV 4S3H SER C -10 UNP O14079 EXPRESSION TAG SEQADV 4S3H GLY C -9 UNP O14079 EXPRESSION TAG SEQADV 4S3H LEU C -8 UNP O14079 EXPRESSION TAG SEQADV 4S3H GLU C -7 UNP O14079 EXPRESSION TAG SEQADV 4S3H VAL C -6 UNP O14079 EXPRESSION TAG SEQADV 4S3H LEU C -5 UNP O14079 EXPRESSION TAG SEQADV 4S3H PHE C -4 UNP O14079 EXPRESSION TAG SEQADV 4S3H GLN C -3 UNP O14079 EXPRESSION TAG SEQADV 4S3H GLY C -2 UNP O14079 EXPRESSION TAG SEQADV 4S3H PRO C -1 UNP O14079 EXPRESSION TAG SEQADV 4S3H HIS C 0 UNP O14079 EXPRESSION TAG SEQADV 4S3H MET D -21 UNP O14079 EXPRESSION TAG SEQADV 4S3H GLY D -20 UNP O14079 EXPRESSION TAG SEQADV 4S3H SER D -19 UNP O14079 EXPRESSION TAG SEQADV 4S3H SER D -18 UNP O14079 EXPRESSION TAG SEQADV 4S3H HIS D -17 UNP O14079 EXPRESSION TAG SEQADV 4S3H HIS D -16 UNP O14079 EXPRESSION TAG SEQADV 4S3H HIS D -15 UNP O14079 EXPRESSION TAG SEQADV 4S3H HIS D -14 UNP O14079 EXPRESSION TAG SEQADV 4S3H HIS D -13 UNP O14079 EXPRESSION TAG SEQADV 4S3H HIS D -12 UNP O14079 EXPRESSION TAG SEQADV 4S3H SER D -11 UNP O14079 EXPRESSION TAG SEQADV 4S3H SER D -10 UNP O14079 EXPRESSION TAG SEQADV 4S3H GLY D -9 UNP O14079 EXPRESSION TAG SEQADV 4S3H LEU D -8 UNP O14079 EXPRESSION TAG SEQADV 4S3H GLU D -7 UNP O14079 EXPRESSION TAG SEQADV 4S3H VAL D -6 UNP O14079 EXPRESSION TAG SEQADV 4S3H LEU D -5 UNP O14079 EXPRESSION TAG SEQADV 4S3H PHE D -4 UNP O14079 EXPRESSION TAG SEQADV 4S3H GLN D -3 UNP O14079 EXPRESSION TAG SEQADV 4S3H GLY D -2 UNP O14079 EXPRESSION TAG SEQADV 4S3H PRO D -1 UNP O14079 EXPRESSION TAG SEQADV 4S3H HIS D 0 UNP O14079 EXPRESSION TAG SEQRES 1 A 126 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 126 LEU GLU VAL LEU PHE GLN GLY PRO HIS MET GLU ILE GLN SEQRES 3 A 126 PHE GLY ASN GLN ARG CYS ARG MET VAL ASN SER GLY GLY SEQRES 4 A 126 PHE LEU ALA THR ASP GLY SER HIS LEU LYS GLU MET GLU SEQRES 5 A 126 THR ASP ASP VAL LEU VAL GLU PHE LEU ASN ILE GLU HIS SEQRES 6 A 126 GLN LEU PHE ILE ARG ASN ILE ARG ALA ILE VAL LYS ILE SEQRES 7 A 126 ALA ASP THR THR VAL LEU PRO SER ALA SER ASP LYS LYS SEQRES 8 A 126 LEU LEU TYR TYR VAL PHE ASP GLU THR ARG VAL ARG ILE SEQRES 9 A 126 ASN ASP THR PRO VAL ILE PHE SER LYS LEU GLU GLU ASP SEQRES 10 A 126 ASN ALA ASN VAL ASN GLU GLY SER LYS SEQRES 1 B 126 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 126 LEU GLU VAL LEU PHE GLN GLY PRO HIS MET GLU ILE GLN SEQRES 3 B 126 PHE GLY ASN GLN ARG CYS ARG MET VAL ASN SER GLY GLY SEQRES 4 B 126 PHE LEU ALA THR ASP GLY SER HIS LEU LYS GLU MET GLU SEQRES 5 B 126 THR ASP ASP VAL LEU VAL GLU PHE LEU ASN ILE GLU HIS SEQRES 6 B 126 GLN LEU PHE ILE ARG ASN ILE ARG ALA ILE VAL LYS ILE SEQRES 7 B 126 ALA ASP THR THR VAL LEU PRO SER ALA SER ASP LYS LYS SEQRES 8 B 126 LEU LEU TYR TYR VAL PHE ASP GLU THR ARG VAL ARG ILE SEQRES 9 B 126 ASN ASP THR PRO VAL ILE PHE SER LYS LEU GLU GLU ASP SEQRES 10 B 126 ASN ALA ASN VAL ASN GLU GLY SER LYS SEQRES 1 C 126 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 126 LEU GLU VAL LEU PHE GLN GLY PRO HIS MET GLU ILE GLN SEQRES 3 C 126 PHE GLY ASN GLN ARG CYS ARG MET VAL ASN SER GLY GLY SEQRES 4 C 126 PHE LEU ALA THR ASP GLY SER HIS LEU LYS GLU MET GLU SEQRES 5 C 126 THR ASP ASP VAL LEU VAL GLU PHE LEU ASN ILE GLU HIS SEQRES 6 C 126 GLN LEU PHE ILE ARG ASN ILE ARG ALA ILE VAL LYS ILE SEQRES 7 C 126 ALA ASP THR THR VAL LEU PRO SER ALA SER ASP LYS LYS SEQRES 8 C 126 LEU LEU TYR TYR VAL PHE ASP GLU THR ARG VAL ARG ILE SEQRES 9 C 126 ASN ASP THR PRO VAL ILE PHE SER LYS LEU GLU GLU ASP SEQRES 10 C 126 ASN ALA ASN VAL ASN GLU GLY SER LYS SEQRES 1 D 126 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 D 126 LEU GLU VAL LEU PHE GLN GLY PRO HIS MET GLU ILE GLN SEQRES 3 D 126 PHE GLY ASN GLN ARG CYS ARG MET VAL ASN SER GLY GLY SEQRES 4 D 126 PHE LEU ALA THR ASP GLY SER HIS LEU LYS GLU MET GLU SEQRES 5 D 126 THR ASP ASP VAL LEU VAL GLU PHE LEU ASN ILE GLU HIS SEQRES 6 D 126 GLN LEU PHE ILE ARG ASN ILE ARG ALA ILE VAL LYS ILE SEQRES 7 D 126 ALA ASP THR THR VAL LEU PRO SER ALA SER ASP LYS LYS SEQRES 8 D 126 LEU LEU TYR TYR VAL PHE ASP GLU THR ARG VAL ARG ILE SEQRES 9 D 126 ASN ASP THR PRO VAL ILE PHE SER LYS LEU GLU GLU ASP SEQRES 10 D 126 ASN ALA ASN VAL ASN GLU GLY SER LYS HET SO4 A 201 5 HET SO4 A 202 5 HET SO4 B 201 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 3(O4 S 2-) FORMUL 8 HOH *20(H2 O) HELIX 1 1 ASP B 76 THR B 78 5 3 SHEET 1 A 6 GLN A 8 ARG A 11 0 SHEET 2 A 6 GLU A 2 PHE A 5 -1 N ILE A 3 O CYS A 10 SHEET 3 A 6 THR A 85 SER A 90 -1 O SER A 90 N GLU A 2 SHEET 4 A 6 VAL A 80 ILE A 82 -1 N ILE A 82 O THR A 85 SHEET 5 A 6 VAL A 54 ILE A 56 -1 N LYS A 55 O ARG A 81 SHEET 6 A 6 THR A 59 THR A 60 -1 O THR A 59 N ILE A 56 SHEET 1 B 9 GLY A 16 ALA A 20 0 SHEET 2 B 9 VAL A 34 ILE A 41 -1 O PHE A 38 N GLY A 17 SHEET 3 B 9 GLN A 44 ASN A 49 -1 O ARG A 48 N GLU A 37 SHEET 4 B 9 LYS A 69 TYR A 73 -1 O TYR A 72 N ILE A 47 SHEET 5 B 9 LYS B 68 TYR B 73 1 O LYS B 69 N LEU A 71 SHEET 6 B 9 GLN B 44 ASN B 49 -1 N ILE B 47 O TYR B 72 SHEET 7 B 9 VAL B 36 ILE B 41 -1 N GLU B 37 O ARG B 48 SHEET 8 B 9 GLY B 16 LEU B 19 -1 N GLY B 17 O PHE B 38 SHEET 9 B 9 LEU B 26 LYS B 27 -1 O LYS B 27 N PHE B 18 SHEET 1 C 6 GLN B 8 ARG B 11 0 SHEET 2 C 6 GLU B 2 PHE B 5 -1 N PHE B 5 O GLN B 8 SHEET 3 C 6 THR B 85 SER B 90 -1 O SER B 90 N GLU B 2 SHEET 4 C 6 VAL B 80 ILE B 82 -1 N ILE B 82 O THR B 85 SHEET 5 C 6 VAL B 54 ILE B 56 -1 N LYS B 55 O ARG B 81 SHEET 6 C 6 THR B 59 THR B 60 -1 O THR B 59 N ILE B 56 SHEET 1 D 6 GLN C 8 ARG C 11 0 SHEET 2 D 6 GLU C 2 PHE C 5 -1 N PHE C 5 O GLN C 8 SHEET 3 D 6 THR C 85 SER C 90 -1 O ILE C 88 N GLN C 4 SHEET 4 D 6 VAL C 80 ILE C 82 -1 N ILE C 82 O THR C 85 SHEET 5 D 6 VAL C 54 ILE C 56 -1 N LYS C 55 O ARG C 81 SHEET 6 D 6 THR C 59 THR C 60 -1 O THR C 59 N ILE C 56 SHEET 1 E 8 GLY C 16 ALA C 20 0 SHEET 2 E 8 VAL C 34 ILE C 41 -1 O LEU C 35 N LEU C 19 SHEET 3 E 8 GLN C 44 ASN C 49 -1 O ARG C 48 N GLU C 37 SHEET 4 E 8 LYS C 68 TYR C 73 -1 O TYR C 72 N ILE C 47 SHEET 5 E 8 LYS D 69 TYR D 73 1 O LEU D 71 N LEU C 71 SHEET 6 E 8 GLN D 44 ASN D 49 -1 N ILE D 47 O TYR D 72 SHEET 7 E 8 VAL D 36 ILE D 41 -1 N GLU D 37 O ARG D 48 SHEET 8 E 8 GLY D 16 LEU D 19 -1 N GLY D 17 O PHE D 38 SHEET 1 F 6 GLN D 8 ARG D 11 0 SHEET 2 F 6 GLU D 2 PHE D 5 -1 N ILE D 3 O CYS D 10 SHEET 3 F 6 THR D 85 SER D 90 -1 O ILE D 88 N GLN D 4 SHEET 4 F 6 VAL D 80 ILE D 82 -1 N ILE D 82 O THR D 85 SHEET 5 F 6 VAL D 54 ILE D 56 -1 N LYS D 55 O ARG D 81 SHEET 6 F 6 THR D 59 THR D 60 -1 O THR D 59 N ILE D 56 SITE 1 AC1 3 ASN A 40 HIS A 43 LYS A 91 SITE 1 AC2 4 TYR A 73 PHE A 75 THR B 59 PHE B 75 SITE 1 AC3 3 LYS B 27 GLU B 28 MET B 29 CRYST1 91.073 91.073 224.503 90.00 90.00 120.00 P 65 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010980 0.006339 0.000000 0.00000 SCALE2 0.000000 0.012679 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004454 0.00000