HEADER HYDROLASE/HYDROLASE INHIBITOR 28-MAY-14 4TKX TITLE STRUCTURE OF PROTEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYS-GINGIPAIN W83; COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 SYNONYM: LYSINE SPECIFIC CYSTEINE PROTEASE,LYSINE-SPECIFIC CYSTEINE COMPND 6 PROTEINASE,PORPHYPAIN,PRTK48; COMPND 7 EC: 3.4.22.47; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORPHYROMONAS GINGIVALIS; SOURCE 3 ORGANISM_TAXID: 837; SOURCE 4 GENE: KGP, PRTK, PRTP; SOURCE 5 EXPRESSION_SYSTEM: PORPHYROMONAS GINGIVALIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 837 KEYWDS CYSTEINE PROTEASE, GINGIVALIS, KGP, CO-VALENT INHIBITOR, HYDROLASE- KEYWDS 2 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.A.GORMAN,M.W.PARKER REVDAT 6 06-NOV-24 4TKX 1 REMARK REVDAT 5 27-DEC-23 4TKX 1 LINK REVDAT 4 27-SEP-17 4TKX 1 SOURCE REMARK REVDAT 3 08-APR-15 4TKX 1 REMARK REVDAT 2 14-JAN-15 4TKX 1 JRNL REVDAT 1 31-DEC-14 4TKX 0 JRNL AUTH M.A.GORMAN,C.A.SEERS,B.J.MICHELL,S.C.FEIL,N.L.HUQ,K.J.CROSS, JRNL AUTH 2 E.C.REYNOLDS,M.W.PARKER JRNL TITL STRUCTURE OF THE LYSINE SPECIFIC PROTEASE KGP FROM JRNL TITL 2 PORPHYROMONAS GINGIVALIS, A TARGET FOR IMPROVED ORAL HEALTH. JRNL REF PROTEIN SCI. V. 24 162 2015 JRNL REFN ESSN 1469-896X JRNL PMID 25327141 JRNL DOI 10.1002/PRO.2589 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.800 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 148260 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.122 REMARK 3 R VALUE (WORKING SET) : 0.120 REMARK 3 FREE R VALUE : 0.145 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 7473 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.7229 - 4.9663 1.00 4834 249 0.1568 0.1677 REMARK 3 2 4.9663 - 3.9429 1.00 4780 274 0.1140 0.1325 REMARK 3 3 3.9429 - 3.4448 1.00 4794 270 0.1226 0.1186 REMARK 3 4 3.4448 - 3.1300 1.00 4804 285 0.1301 0.1386 REMARK 3 5 3.1300 - 2.9057 1.00 4820 226 0.1230 0.1460 REMARK 3 6 2.9057 - 2.7344 1.00 4824 256 0.1150 0.1543 REMARK 3 7 2.7344 - 2.5975 1.00 4813 245 0.1082 0.1239 REMARK 3 8 2.5975 - 2.4844 1.00 4828 254 0.0939 0.1307 REMARK 3 9 2.4844 - 2.3888 1.00 4804 258 0.0928 0.1281 REMARK 3 10 2.3888 - 2.3064 1.00 4785 288 0.0890 0.1191 REMARK 3 11 2.3064 - 2.2343 1.00 4789 272 0.0833 0.1112 REMARK 3 12 2.2343 - 2.1704 1.00 4825 235 0.0850 0.1150 REMARK 3 13 2.1704 - 2.1133 1.00 4874 206 0.0909 0.1408 REMARK 3 14 2.1133 - 2.0617 1.00 4809 268 0.0938 0.1260 REMARK 3 15 2.0617 - 2.0149 1.00 4759 280 0.0921 0.1393 REMARK 3 16 2.0149 - 1.9720 1.00 4838 259 0.1013 0.1256 REMARK 3 17 1.9720 - 1.9325 1.00 4813 262 0.1013 0.1593 REMARK 3 18 1.9325 - 1.8961 1.00 4842 253 0.1041 0.1386 REMARK 3 19 1.8961 - 1.8622 1.00 4797 235 0.1009 0.1545 REMARK 3 20 1.8622 - 1.8306 1.00 4805 260 0.1106 0.1317 REMARK 3 21 1.8306 - 1.8011 1.00 4799 268 0.1227 0.1755 REMARK 3 22 1.8011 - 1.7734 1.00 4753 276 0.1446 0.1860 REMARK 3 23 1.7734 - 1.7473 1.00 4865 248 0.1627 0.2123 REMARK 3 24 1.7473 - 1.7227 0.99 4776 244 0.1665 0.1768 REMARK 3 25 1.7227 - 1.6994 0.97 4690 217 0.1793 0.1735 REMARK 3 26 1.6994 - 1.6774 0.94 4513 275 0.1843 0.2308 REMARK 3 27 1.6774 - 1.6564 0.91 4422 211 0.2007 0.2446 REMARK 3 28 1.6564 - 1.6364 0.87 4138 205 0.2328 0.2480 REMARK 3 29 1.6364 - 1.6174 0.83 4027 215 0.2421 0.2858 REMARK 3 30 1.6174 - 1.5992 0.74 3567 179 0.2702 0.2981 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3775 REMARK 3 ANGLE : 1.294 5144 REMARK 3 CHIRALITY : 0.080 547 REMARK 3 PLANARITY : 0.006 656 REMARK 3 DIHEDRAL : 13.320 1318 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TKX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000201793. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96 REMARK 200 MONOCHROMATOR : SI(111) SILICON CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78616 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 48.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: HEXAGONAL RODS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, SODIUM ACETATE, AMMONIUM REMARK 280 SULPHATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.42600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 58.47050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 58.47050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.13900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 58.47050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 58.47050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 21.71300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 58.47050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.47050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 65.13900 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 58.47050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.47050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 21.71300 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 43.42600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 K K L 707 LIES ON A SPECIAL POSITION. REMARK 375 HOH L 871 LIES ON A SPECIAL POSITION. REMARK 375 HOH L 880 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 1238 O HOH L 1276 1.96 REMARK 500 O1 SO4 L 701 O HOH L 801 1.98 REMARK 500 O HOH L 858 O HOH L 881 2.12 REMARK 500 OG SER L 334 O HOH L 1193 2.13 REMARK 500 O HOH L 901 O HOH L 1163 2.16 REMARK 500 O HOH L 1091 O HOH L 1204 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH L 855 O HOH L 891 7554 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA L 303 52.23 -148.75 REMARK 500 ASP L 388 117.21 -167.67 REMARK 500 ASP L 388 116.54 -167.67 REMARK 500 VAL L 395 -45.79 -135.32 REMARK 500 TYR L 407 -55.46 -137.03 REMARK 500 ALA L 443 -142.99 163.63 REMARK 500 ASP L 452 108.34 -167.58 REMARK 500 ILE L 478 7.86 51.70 REMARK 500 ASN L 524 -0.76 84.82 REMARK 500 ALA L 598 -142.18 59.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL L 336 ASP L 337 -123.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH L1210 DISTANCE = 6.09 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 PB L 719 PB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP L 313 OD1 REMARK 620 2 ASP L 313 OD2 50.8 REMARK 620 3 PHE L 482 O 76.8 127.6 REMARK 620 4 GLU L 491 OE1 123.3 110.0 97.0 REMARK 620 5 GLU L 491 OE2 73.3 77.9 87.6 50.0 REMARK 620 6 HOH L1203 O 153.1 153.6 77.8 68.5 114.2 REMARK 620 7 HOH L1238 O 122.4 74.8 151.7 88.9 116.6 78.8 REMARK 620 8 HOH L1275 O 72.6 82.6 82.4 163.6 145.9 95.5 84.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K L 707 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP L 388 OD2 REMARK 620 2 ASP L 388 OD2 0.0 REMARK 620 3 HOH L 805 O 102.5 102.5 REMARK 620 4 HOH L 805 O 132.5 132.5 80.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA L 706 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR L 402 OH REMARK 620 2 VAL L 521 O 95.9 REMARK 620 3 THR L 536 OG1 91.9 100.5 REMARK 620 4 SER L 537 O 164.7 93.9 97.8 REMARK 620 5 ASP L 542 OD2 80.6 88.4 169.0 88.0 REMARK 620 6 HOH L 963 O 86.7 175.2 83.4 82.7 88.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA L 705 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA L 543 O REMARK 620 2 THR L 544 O 77.0 REMARK 620 3 LEU L 546 O 103.8 95.6 REMARK 620 4 SER L 549 O 93.8 170.6 84.7 REMARK 620 5 TYR L 550 O 83.6 100.5 163.4 80.0 REMARK 620 6 ASN L 551 OD1 169.7 106.7 85.5 82.6 86.3 REMARK 620 N 1 2 3 4 5 REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: N-[(1S)-5-AMINO-1-(CHLOROACETYL)PENTYL]-4- REMARK 630 METHYLBENZENESULFONAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 TCK L 720 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: TSU LYS 0QE REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 L 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 L 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 L 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 L 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA L 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA L 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K L 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT L 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO L 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO L 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO L 711 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO L 712 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO L 713 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO L 714 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO L 715 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO L 716 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO L 717 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO L 718 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PB L 719 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TCK L 720 DBREF 4TKX L 229 680 UNP Q51817 KGP83_PORGN 229 680 SEQRES 1 L 452 ASP VAL TYR THR ASP HIS GLY ASP LEU TYR ASN THR PRO SEQRES 2 L 452 VAL ARG MET LEU VAL VAL ALA GLY ALA LYS PHE LYS GLU SEQRES 3 L 452 ALA LEU LYS PRO TRP LEU THR TRP LYS ALA GLN LYS GLY SEQRES 4 L 452 PHE TYR LEU ASP VAL HIS TYR THR ASP GLU ALA GLU VAL SEQRES 5 L 452 GLY THR THR ASN ALA SER ILE LYS ALA PHE ILE HIS LYS SEQRES 6 L 452 LYS TYR ASN ASP GLY LEU ALA ALA SER ALA ALA PRO VAL SEQRES 7 L 452 PHE LEU ALA LEU VAL GLY ASP THR ASP VAL ILE SER GLY SEQRES 8 L 452 GLU LYS GLY LYS LYS THR LYS LYS VAL THR ASP LEU TYR SEQRES 9 L 452 TYR SER ALA VAL ASP GLY ASP TYR PHE PRO GLU MET TYR SEQRES 10 L 452 THR PHE ARG MET SER ALA SER SER PRO GLU GLU LEU THR SEQRES 11 L 452 ASN ILE ILE ASP LYS VAL LEU MET TYR GLU LYS ALA THR SEQRES 12 L 452 MET PRO ASP LYS SER TYR LEU GLU LYS VAL LEU LEU ILE SEQRES 13 L 452 ALA GLY ALA ASP TYR SER TRP ASN SER GLN VAL GLY GLN SEQRES 14 L 452 PRO THR ILE LYS TYR GLY MET GLN TYR TYR TYR ASN GLN SEQRES 15 L 452 GLU HIS GLY TYR THR ASP VAL TYR ASN TYR LEU LYS ALA SEQRES 16 L 452 PRO TYR THR GLY CYS TYR SER HIS LEU ASN THR GLY VAL SEQRES 17 L 452 SER PHE ALA ASN TYR THR ALA HIS GLY SER GLU THR ALA SEQRES 18 L 452 TRP ALA ASP PRO LEU LEU THR THR SER GLN LEU LYS ALA SEQRES 19 L 452 LEU THR ASN LYS ASP LYS TYR PHE LEU ALA ILE GLY ASN SEQRES 20 L 452 CYS CYS ILE THR ALA GLN PHE ASP TYR VAL GLN PRO CYS SEQRES 21 L 452 PHE GLY GLU VAL ILE THR ARG VAL LYS GLU LYS GLY ALA SEQRES 22 L 452 TYR ALA TYR ILE GLY SER SER PRO ASN SER TYR TRP GLY SEQRES 23 L 452 GLU ASP TYR TYR TRP SER VAL GLY ALA ASN ALA VAL PHE SEQRES 24 L 452 GLY VAL GLN PRO THR PHE GLU GLY THR SER MET GLY SER SEQRES 25 L 452 TYR ASP ALA THR PHE LEU GLU ASP SER TYR ASN THR VAL SEQRES 26 L 452 ASN SER ILE MET TRP ALA GLY ASN LEU ALA ALA THR HIS SEQRES 27 L 452 ALA GLY ASN ILE GLY ASN ILE THR HIS ILE GLY ALA HIS SEQRES 28 L 452 TYR TYR TRP GLU ALA TYR HIS VAL LEU GLY ASP GLY SER SEQRES 29 L 452 VAL MET PRO TYR ARG ALA MET PRO LYS THR ASN THR TYR SEQRES 30 L 452 THR LEU PRO ALA SER LEU PRO GLN ASN GLN ALA SER TYR SEQRES 31 L 452 SER ILE GLN ALA SER ALA GLY SER TYR VAL ALA ILE SER SEQRES 32 L 452 LYS ASP GLY VAL LEU TYR GLY THR GLY VAL ALA ASN ALA SEQRES 33 L 452 SER GLY VAL ALA THR VAL SER MET THR LYS GLN ILE THR SEQRES 34 L 452 GLU ASN GLY ASN TYR ASP VAL VAL ILE THR ARG SER ASN SEQRES 35 L 452 TYR LEU PRO VAL ILE LYS GLN ILE GLN VAL HET SO4 L 701 5 HET SO4 L 702 5 HET SO4 L 703 5 HET SO4 L 704 5 HET NA L 705 1 HET NA L 706 1 HET K L 707 1 HET ACT L 708 7 HET EDO L 709 10 HET EDO L 710 10 HET EDO L 711 10 HET EDO L 712 10 HET EDO L 713 10 HET EDO L 714 10 HET EDO L 715 10 HET EDO L 716 10 HET EDO L 717 10 HET EDO L 718 10 HET PB L 719 1 HET TCK L 720 41 HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETNAM K POTASSIUM ION HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PB LEAD (II) ION HETNAM TCK N-[(1S)-5-AMINO-1-(CHLOROACETYL)PENTYL]-4- HETNAM 2 TCK METHYLBENZENESULFONAMIDE HETSYN EDO ETHYLENE GLYCOL HETSYN TCK TOS-LYS-CH2CL FORMUL 2 SO4 4(O4 S 2-) FORMUL 6 NA 2(NA 1+) FORMUL 8 K K 1+ FORMUL 9 ACT C2 H3 O2 1- FORMUL 10 EDO 10(C2 H6 O2) FORMUL 20 PB PB 2+ FORMUL 21 TCK C14 H21 CL N2 O3 S FORMUL 22 HOH *479(H2 O) HELIX 1 AA1 ASP L 229 HIS L 234 1 6 HELIX 2 AA2 PHE L 252 LYS L 266 1 15 HELIX 3 AA3 THR L 283 ALA L 301 1 19 HELIX 4 AA4 ASP L 330 ALA L 335 1 6 HELIX 5 AA5 SER L 353 ALA L 370 1 18 HELIX 6 AA6 ASP L 374 LEU L 378 5 5 HELIX 7 AA7 SER L 390 VAL L 395 1 6 HELIX 8 AA8 VAL L 395 TYR L 407 1 13 HELIX 9 AA9 ASN L 409 GLY L 413 5 5 HELIX 10 AB1 TYR L 429 GLY L 435 1 7 HELIX 11 AB2 THR L 457 ALA L 462 1 6 HELIX 12 AB3 CYS L 488 VAL L 496 1 9 HELIX 13 AB4 TYR L 512 GLY L 522 1 11 HELIX 14 AB5 GLY L 539 LEU L 546 1 8 HELIX 15 AB6 THR L 552 ILE L 570 1 19 HELIX 16 AB7 GLY L 577 ALA L 584 1 8 SHEET 1 AA1 4 PHE L 268 TYR L 274 0 SHEET 2 AA1 4 VAL L 242 ALA L 248 1 N VAL L 242 O TYR L 269 SHEET 3 AA1 4 PHE L 307 VAL L 311 1 O ALA L 309 N LEU L 245 SHEET 4 AA1 4 TYR L 345 MET L 349 1 O TYR L 345 N LEU L 308 SHEET 1 AA2 2 GLU L 320 LYS L 321 0 SHEET 2 AA2 2 VAL L 328 THR L 329 -1 O THR L 329 N GLU L 320 SHEET 1 AA3 6 ASP L 416 TYR L 420 0 SHEET 2 AA3 6 LYS L 380 ALA L 385 1 N ALA L 385 O TYR L 420 SHEET 3 AA3 6 PHE L 438 THR L 442 1 O ASN L 440 N ILE L 384 SHEET 4 AA3 6 PHE L 470 ASN L 475 1 O ASN L 475 N TYR L 441 SHEET 5 AA3 6 ALA L 501 SER L 507 1 O ILE L 505 N GLY L 474 SHEET 6 AA3 6 TYR L 585 GLY L 589 -1 O LEU L 588 N TYR L 504 SHEET 1 AA4 3 GLY L 445 SER L 446 0 SHEET 2 AA4 3 ALA L 449 TRP L 450 -1 O ALA L 449 N SER L 446 SHEET 3 AA4 3 LEU L 455 THR L 456 -1 O LEU L 455 N TRP L 450 SHEET 1 AA5 7 TYR L 605 THR L 606 0 SHEET 2 AA5 7 SER L 617 ALA L 622 -1 O GLN L 621 N THR L 606 SHEET 3 AA5 7 VAL L 647 MET L 652 -1 O ALA L 648 N ILE L 620 SHEET 4 AA5 7 VAL L 635 VAL L 641 -1 N THR L 639 O SER L 651 SHEET 5 AA5 7 TYR L 627 LYS L 632 -1 N VAL L 628 O GLY L 640 SHEET 6 AA5 7 GLY L 660 THR L 667 -1 O THR L 667 N TYR L 627 SHEET 7 AA5 7 VAL L 674 VAL L 680 -1 O ILE L 678 N TYR L 662 LINK SG CYS L 477 CM TCK L 720 1555 1555 1.73 LINK OD1 ASP L 313 PB PB L 719 1555 1555 2.53 LINK OD2 ASP L 313 PB PB L 719 1555 1555 2.57 LINK OD2 ASP L 388 K K L 707 1555 1555 2.54 LINK OD2 ASP L 388 K K L 707 1555 7554 2.54 LINK OH TYR L 402 NA NA L 706 1555 1555 2.52 LINK O PHE L 482 PB PB L 719 1555 1555 2.56 LINK OE1 GLU L 491 PB PB L 719 1555 1555 2.69 LINK OE2 GLU L 491 PB PB L 719 1555 1555 2.48 LINK O VAL L 521 NA NA L 706 1555 1555 2.30 LINK OG1 THR L 536 NA NA L 706 1555 1555 2.35 LINK O SER L 537 NA NA L 706 1555 1555 2.38 LINK OD2 ASP L 542 NA NA L 706 1555 1555 2.36 LINK O ALA L 543 NA NA L 705 1555 1555 2.63 LINK O THR L 544 NA NA L 705 1555 1555 2.53 LINK O LEU L 546 NA NA L 705 1555 1555 2.29 LINK O SER L 549 NA NA L 705 1555 1555 2.42 LINK O TYR L 550 NA NA L 705 1555 1555 2.52 LINK OD1 ASN L 551 NA NA L 705 1555 1555 2.49 LINK NA NA L 706 O HOH L 963 1555 1555 2.46 LINK K K L 707 O HOH L 805 1555 1555 2.61 LINK K K L 707 O HOH L 805 1555 7554 2.61 LINK PB PB L 719 O HOH L1203 1555 1555 2.63 LINK PB PB L 719 O HOH L1238 1555 1555 2.47 LINK PB PB L 719 O HOH L1275 1555 1555 2.62 CISPEP 1 THR L 240 PRO L 241 0 -7.90 CISPEP 2 ALA L 423 PRO L 424 0 1.99 CISPEP 3 ASP L 452 PRO L 453 0 1.24 SITE 1 AC1 7 GLU L 547 ARG L 597 LYS L 601 ASN L 670 SITE 2 AC1 7 HOH L 801 HOH L 839 HOH L1234 SITE 1 AC2 4 PRO L 424 TYR L 425 THR L 426 EDO L 716 SITE 1 AC3 5 ASP L 229 VAL L 230 HIS L 566 ASN L 569 SITE 2 AC3 5 HOH L1266 SITE 1 AC4 6 GLY L 427 CYS L 428 TYR L 429 SER L 430 SITE 2 AC4 6 EDO L 709 EDO L 716 SITE 1 AC5 6 ALA L 543 THR L 544 LEU L 546 SER L 549 SITE 2 AC5 6 TYR L 550 ASN L 551 SITE 1 AC6 6 TYR L 402 VAL L 521 THR L 536 SER L 537 SITE 2 AC6 6 ASP L 542 HOH L 963 SITE 1 AC7 3 ASP L 388 HIS L 444 HOH L 805 SITE 1 AC8 6 GLU L 279 SER L 286 PHE L 290 HOH L 804 SITE 2 AC8 6 HOH L 806 HOH L 822 SITE 1 AC9 5 TYR L 429 ASN L 433 GLN L 459 SO4 L 704 SITE 2 AC9 5 HOH L 972 SITE 1 AD1 3 GLU L 356 HOH L 990 HOH L1217 SITE 1 AD2 8 ASN L 524 VAL L 529 PRO L 531 THR L 532 SITE 2 AD2 8 HOH L 934 HOH L1074 HOH L1102 HOH L1192 SITE 1 AD3 7 HIS L 412 ARG L 597 MET L 599 LYS L 601 SITE 2 AD3 7 ASN L 670 HOH L 807 HOH L 837 SITE 1 AD4 6 HIS L 412 THR L 604 GLN L 621 ALA L 622 SITE 2 AD4 6 HOH L 815 HOH L 851 SITE 1 AD5 4 SER L 537 HIS L 566 HOH L1004 HOH L1273 SITE 1 AD6 4 ASP L 416 TYR L 418 HOH L1009 HOH L1242 SITE 1 AD7 7 THR L 426 CYS L 428 PRO L 453 SO4 L 702 SITE 2 AD7 7 SO4 L 704 HOH L1083 HOH L1122 SITE 1 AD8 3 ASP L 236 LEU L 237 TYR L 238 SITE 1 AD9 7 ASP L 362 MET L 366 LYS L 466 ASP L 467 SITE 2 AD9 7 TYR L 469 GLU L 498 HOH L 886 SITE 1 AE1 6 ASP L 313 PHE L 482 GLU L 491 HOH L1203 SITE 2 AE1 6 HOH L1238 HOH L1275 SITE 1 AE2 16 SER L 390 TRP L 391 THR L 442 ALA L 443 SITE 2 AE2 16 HIS L 444 GLY L 445 ASN L 475 CYS L 477 SITE 3 AE2 16 ASN L 510 SER L 511 TYR L 512 TRP L 513 SITE 4 AE2 16 ASP L 516 HOH L 805 HOH L 856 HOH L 949 CRYST1 116.941 116.941 86.852 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008551 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008551 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011514 0.00000