HEADER TRANSFERASE 31-MAY-14 4TM5 TITLE X-RAY CRYSTAL STRUCTURE OF A D-AMINO ACID AMINOTRANSFERASE FROM TITLE 2 BURKHOLDERIA THAILANDENSIS E264 BOUND TO THE CO-FACTOR PYRIDOXAL TITLE 3 PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-AMINO ACID AMINOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA THAILANDENSIS; SOURCE 3 ORGANISM_TAXID: 271848; SOURCE 4 STRAIN: E264 / ATCC 700388 / DSM 13276 / CIP 106301; SOURCE 5 GENE: BTH_I0381; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS D-AMINO ACID, AMINOTRANSFERASE, PLP, STRUCTURAL GENOMICS, SEATTLE KEYWDS 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.W.FAIRMAN,B.M.TAYLOR,T.E.EDWARDS,D.LORIMER,SEATTLE STRUCTURAL AUTHOR 2 GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 27-DEC-23 4TM5 1 REMARK REVDAT 3 11-DEC-19 4TM5 1 REMARK REVDAT 2 13-SEP-17 4TM5 1 COMPND SOURCE JRNL REMARK REVDAT 2 2 1 HETNAM FORMUL REVDAT 1 02-JUL-14 4TM5 0 JRNL AUTH J.W.FAIRMAN,B.M.TAYLOR,T.E.EDWARDS,D.LORIMER JRNL TITL X-RAY CRYSTAL STRUCTURE OF A D-AMINO ACID AMINOTRANSFERASE JRNL TITL 2 FROM BURKHOLDERIA THAILANDENSIS E264 BOUND TO THE CO-FACTOR JRNL TITL 3 PYRIDOXAL PHOSPHATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 40044 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2024 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3662 - 3.8616 0.98 2849 152 0.1438 0.1881 REMARK 3 2 3.8616 - 3.0652 1.00 2768 157 0.1457 0.1797 REMARK 3 3 3.0652 - 2.6778 1.00 2742 151 0.1605 0.1804 REMARK 3 4 2.6778 - 2.4330 1.00 2757 130 0.1601 0.1642 REMARK 3 5 2.4330 - 2.2586 1.00 2759 134 0.1556 0.1867 REMARK 3 6 2.2586 - 2.1255 1.00 2705 138 0.1456 0.1957 REMARK 3 7 2.1255 - 2.0190 1.00 2743 123 0.1484 0.1992 REMARK 3 8 2.0190 - 1.9311 1.00 2711 151 0.1542 0.1983 REMARK 3 9 1.9311 - 1.8568 1.00 2709 143 0.1538 0.1986 REMARK 3 10 1.8568 - 1.7927 1.00 2680 156 0.1575 0.2045 REMARK 3 11 1.7927 - 1.7367 1.00 2688 160 0.1579 0.2041 REMARK 3 12 1.7367 - 1.6870 1.00 2713 151 0.1620 0.2026 REMARK 3 13 1.6870 - 1.6426 1.00 2695 159 0.1858 0.2197 REMARK 3 14 1.6426 - 1.6030 0.93 2501 119 0.2108 0.2633 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2353 REMARK 3 ANGLE : 1.288 3221 REMARK 3 CHIRALITY : 0.056 367 REMARK 3 PLANARITY : 0.006 428 REMARK 3 DIHEDRAL : 13.446 873 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5019 26.5569 64.0706 REMARK 3 T TENSOR REMARK 3 T11: 0.1062 T22: 0.1970 REMARK 3 T33: 0.2151 T12: -0.0291 REMARK 3 T13: -0.0134 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 1.9869 L22: 2.4997 REMARK 3 L33: 4.4153 L12: 0.2216 REMARK 3 L13: -0.3527 L23: 0.1778 REMARK 3 S TENSOR REMARK 3 S11: 0.0185 S12: -0.0445 S13: 0.0054 REMARK 3 S21: -0.1137 S22: 0.0435 S23: 0.3694 REMARK 3 S31: 0.1816 S32: -0.5678 S33: -0.1212 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8901 25.6011 61.0784 REMARK 3 T TENSOR REMARK 3 T11: 0.0887 T22: 0.0804 REMARK 3 T33: 0.0929 T12: -0.0306 REMARK 3 T13: 0.0015 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 0.8687 L22: 1.1848 REMARK 3 L33: 2.7382 L12: 0.0731 REMARK 3 L13: 0.0186 L23: 1.1465 REMARK 3 S TENSOR REMARK 3 S11: -0.0321 S12: 0.0984 S13: -0.0438 REMARK 3 S21: -0.0590 S22: 0.0132 S23: 0.0710 REMARK 3 S31: 0.0901 S32: -0.1628 S33: 0.0223 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0266 17.0512 66.7098 REMARK 3 T TENSOR REMARK 3 T11: 0.1477 T22: 0.0725 REMARK 3 T33: 0.1362 T12: 0.0131 REMARK 3 T13: 0.0019 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.8807 L22: 1.9994 REMARK 3 L33: 2.8393 L12: 0.8387 REMARK 3 L13: 0.2856 L23: 1.8498 REMARK 3 S TENSOR REMARK 3 S11: 0.0598 S12: -0.0716 S13: -0.1367 REMARK 3 S21: 0.1711 S22: 0.0387 S23: -0.0383 REMARK 3 S31: 0.3275 S32: 0.0492 S33: -0.0920 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 81 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1723 22.9968 61.9543 REMARK 3 T TENSOR REMARK 3 T11: 0.0934 T22: 0.0814 REMARK 3 T33: 0.1266 T12: -0.0199 REMARK 3 T13: 0.0117 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 1.3081 L22: 0.4770 REMARK 3 L33: 2.2958 L12: 0.0814 REMARK 3 L13: 0.6145 L23: -0.2291 REMARK 3 S TENSOR REMARK 3 S11: -0.0475 S12: 0.0702 S13: -0.0396 REMARK 3 S21: -0.0282 S22: -0.0288 S23: 0.0935 REMARK 3 S31: 0.0232 S32: -0.1646 S33: 0.0615 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9155 30.1373 53.9263 REMARK 3 T TENSOR REMARK 3 T11: 0.1295 T22: 0.0786 REMARK 3 T33: 0.1024 T12: -0.0031 REMARK 3 T13: -0.0147 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 1.4046 L22: 0.5150 REMARK 3 L33: 1.2017 L12: 0.4723 REMARK 3 L13: -0.4368 L23: 0.2196 REMARK 3 S TENSOR REMARK 3 S11: -0.0619 S12: 0.1412 S13: 0.0048 REMARK 3 S21: -0.0741 S22: 0.0404 S23: 0.0163 REMARK 3 S31: -0.0492 S32: -0.0464 S33: 0.0055 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5285 34.8014 59.9236 REMARK 3 T TENSOR REMARK 3 T11: 0.1010 T22: 0.0920 REMARK 3 T33: 0.0947 T12: -0.0206 REMARK 3 T13: -0.0045 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 1.0959 L22: 0.9369 REMARK 3 L33: 1.2726 L12: 0.4409 REMARK 3 L13: -0.3300 L23: -0.0183 REMARK 3 S TENSOR REMARK 3 S11: -0.0041 S12: 0.0687 S13: 0.0017 REMARK 3 S21: 0.0374 S22: 0.0178 S23: -0.0641 REMARK 3 S31: -0.1109 S32: 0.1471 S33: -0.0174 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 202 THROUGH 223 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0265 23.7918 54.0649 REMARK 3 T TENSOR REMARK 3 T11: 0.1304 T22: 0.2153 REMARK 3 T33: 0.1949 T12: 0.0008 REMARK 3 T13: 0.0085 T23: -0.0345 REMARK 3 L TENSOR REMARK 3 L11: 2.7453 L22: 2.2000 REMARK 3 L33: 1.9060 L12: 0.1458 REMARK 3 L13: -0.6599 L23: -0.3410 REMARK 3 S TENSOR REMARK 3 S11: 0.1173 S12: -0.3586 S13: -0.1857 REMARK 3 S21: 0.0700 S22: 0.0133 S23: -0.4270 REMARK 3 S31: 0.2823 S32: 0.7120 S33: 0.0433 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 224 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5836 23.0060 49.1474 REMARK 3 T TENSOR REMARK 3 T11: 0.1408 T22: 0.1802 REMARK 3 T33: 0.2318 T12: 0.0035 REMARK 3 T13: 0.0369 T23: -0.0560 REMARK 3 L TENSOR REMARK 3 L11: 1.1187 L22: 0.9221 REMARK 3 L33: 1.7472 L12: 0.2055 REMARK 3 L13: -0.4508 L23: -0.0565 REMARK 3 S TENSOR REMARK 3 S11: -0.1326 S12: 0.0220 S13: -0.3790 REMARK 3 S21: -0.0892 S22: 0.1066 S23: -0.4080 REMARK 3 S31: 0.2539 S32: 0.3340 S33: 0.0063 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 264 THROUGH 282 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7250 34.4678 42.1912 REMARK 3 T TENSOR REMARK 3 T11: 0.1950 T22: 0.2145 REMARK 3 T33: 0.1262 T12: -0.0961 REMARK 3 T13: 0.0386 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 1.4918 L22: 1.0388 REMARK 3 L33: 1.0871 L12: 0.9468 REMARK 3 L13: -0.6877 L23: 0.0057 REMARK 3 S TENSOR REMARK 3 S11: -0.2138 S12: 0.4820 S13: -0.0356 REMARK 3 S21: -0.4165 S22: 0.3357 S23: -0.2007 REMARK 3 S31: -0.2636 S32: 0.1428 S33: -0.0412 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 283 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7791 16.8082 41.9073 REMARK 3 T TENSOR REMARK 3 T11: 0.2580 T22: 0.2220 REMARK 3 T33: 0.2030 T12: -0.0587 REMARK 3 T13: 0.0445 T23: -0.1161 REMARK 3 L TENSOR REMARK 3 L11: 1.1348 L22: 1.7708 REMARK 3 L33: 3.2885 L12: -1.3417 REMARK 3 L13: -0.0259 L23: 0.7965 REMARK 3 S TENSOR REMARK 3 S11: -0.1674 S12: 0.3575 S13: -0.4759 REMARK 3 S21: -0.2016 S22: 0.1308 S23: 0.0970 REMARK 3 S31: 0.4301 S32: -0.3024 S33: 0.0833 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TM5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000201852. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12709 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40085 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.840 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.86 REMARK 200 R MERGE FOR SHELL (I) : 0.40200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.240 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 400 NL OF PROTEIN + 400 NL OF MORPHEUS REMARK 280 CONDITION C4 - 0.1 M MES/IMIDAZOLE PH 6.5, 12.5% PEG1000, 12.5% REMARK 280 PEG3350, 12.5% MPD, 30 MM SODIUM NITRATE, 30 MM DISODIUM REMARK 280 HYDROGEN PHOSPHATE, 30 MM AMMONIUM SULFATE, PH 6.50, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.00500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.00500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.91500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.01000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.91500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.01000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.00500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.91500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 35.01000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.00500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.91500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 35.01000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 70.02000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 140.01000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 405 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 416 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 ALA A 4 REMARK 465 ASP A 5 REMARK 465 SER A 302 REMARK 465 VAL A 303 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 6 CG1 CG2 CD1 REMARK 470 ARG A 90 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 117 CG CD CE NZ REMARK 470 ARG A 239 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 277 CG CD OE1 NE2 REMARK 470 ARG A 280 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 301 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 579 O HOH A 697 2.18 REMARK 500 OD2 ASP A 142 O HOH A 401 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 196 -87.16 -105.80 REMARK 500 SER A 200 31.17 -150.59 REMARK 500 GLU A 264 -111.00 54.89 REMARK 500 GLN A 277 -119.28 51.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 696 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A 737 DISTANCE = 5.92 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4M0J RELATED DB: PDB REMARK 900 SAME PROTEIN TARGET IN APO FORM WITHOUT PLP CO-FACTOR. REMARK 900 RELATED ID: BUTHA.10478.A.B1 RELATED DB: TARGETTRACK DBREF 4TM5 A 1 303 UNP Q2T1L0 Q2T1L0_BURTA 1 303 SEQADV 4TM5 MET A -7 UNP Q2T1L0 INITIATING METHIONINE SEQADV 4TM5 ALA A -6 UNP Q2T1L0 EXPRESSION TAG SEQADV 4TM5 HIS A -5 UNP Q2T1L0 EXPRESSION TAG SEQADV 4TM5 HIS A -4 UNP Q2T1L0 EXPRESSION TAG SEQADV 4TM5 HIS A -3 UNP Q2T1L0 EXPRESSION TAG SEQADV 4TM5 HIS A -2 UNP Q2T1L0 EXPRESSION TAG SEQADV 4TM5 HIS A -1 UNP Q2T1L0 EXPRESSION TAG SEQADV 4TM5 HIS A 0 UNP Q2T1L0 EXPRESSION TAG SEQRES 1 A 311 MET ALA HIS HIS HIS HIS HIS HIS MET SER GLN ALA ASP SEQRES 2 A 311 ILE GLU PRO ILE VAL TYR LEU SER VAL ALA SER ARG GLU SEQRES 3 A 311 GLU LEU VAL PRO LEU SER GLU ALA ARG VAL PRO VAL LEU SEQRES 4 A 311 ASP ARG GLY PHE ILE PHE GLY ASP GLY VAL TYR GLU VAL SEQRES 5 A 311 VAL PRO ILE TYR ALA GLU GLY ALA ARG ARG ALA PRO PHE SEQRES 6 A 311 ARG ILE ALA GLN HIS LEU ALA ARG LEU ALA ARG SER LEU SEQRES 7 A 311 LYS LYS ILE GLY ILE ALA ASP PRO HIS ASP GLU ALA GLY SEQRES 8 A 311 TRP ARG ALA LEU VAL ALA ARG LEU VAL ASP ALA ASN ALA SEQRES 9 A 311 ALA ALA LEU GLY ASP GLY GLN HIS ALA ILE VAL TYR ILE SEQRES 10 A 311 GLN VAL THR ARG GLY VAL ALA LYS ARG GLY HIS ALA PHE SEQRES 11 A 311 PRO ALA ASN ALA VAL PRO THR VAL PHE ALA MET ALA SER SEQRES 12 A 311 PRO LEU ALA LEU PRO THR ASP ALA GLN ARG ALA GLN GLY SEQRES 13 A 311 VAL HIS CYS VAL THR ALA GLU ASP ARG ARG TRP LEU HIS SEQRES 14 A 311 CYS ASP ILE LLP SER VAL SER LEU LEU GLY ASN VAL LEU SEQRES 15 A 311 MET ALA GLN HIS ALA ALA GLU HIS ASP ALA ALA GLU THR SEQRES 16 A 311 ILE GLN LEU ARG ASP GLY ASN VAL THR GLU GLY SER SER SEQRES 17 A 311 SER ASN VAL TRP ILE VAL LYS ASN GLY GLU LEU ILE ALA SEQRES 18 A 311 PRO PRO ARG SER ASN ARG ILE LEU GLU GLY ILE ARG TYR SEQRES 19 A 311 ALA LEU VAL GLU GLU LEU ALA GLU GLU CYS GLY ILE ARG SEQRES 20 A 311 PHE VAL ALA ARG GLU ILE ASN GLU ALA GLU LEU ARG ALA SEQRES 21 A 311 ALA ASP GLU ILE LEU LEU THR SER ALA THR LYS GLU ILE SEQRES 22 A 311 LEU PRO VAL THR ARG LEU ASP ASP LEU PRO VAL GLN GLY SEQRES 23 A 311 GLY ARG PRO GLY PRO VAL PHE ASP ALA LEU TYR ALA ALA SEQRES 24 A 311 TYR GLN ARG ALA LYS ALA HIS GLU MET GLU SER VAL MODRES 4TM5 LLP A 165 LYS MODIFIED RESIDUE HET LLP A 165 24 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE FORMUL 1 LLP C14 H22 N3 O7 P FORMUL 2 HOH *349(H2 O) HELIX 1 AA1 SER A 24 ALA A 26 5 3 HELIX 2 AA2 ASP A 32 PHE A 37 1 6 HELIX 3 AA3 ARG A 58 ILE A 73 1 16 HELIX 4 AA4 ASP A 80 ASN A 95 1 16 HELIX 5 AA5 ASN A 95 GLY A 100 1 6 HELIX 6 AA6 THR A 141 GLY A 148 1 8 HELIX 7 AA7 LEU A 169 HIS A 182 1 14 HELIX 8 AA8 GLY A 223 GLY A 237 1 15 HELIX 9 AA9 ASN A 246 ALA A 252 1 7 HELIX 10 AB1 GLY A 282 GLU A 301 1 20 SHEET 1 AA1 6 ARG A 17 PRO A 22 0 SHEET 2 AA1 6 ILE A 9 VAL A 14 -1 N VAL A 10 O VAL A 21 SHEET 3 AA1 6 THR A 129 PRO A 136 -1 O VAL A 130 N SER A 13 SHEET 4 AA1 6 ALA A 105 THR A 112 -1 N GLN A 110 O PHE A 131 SHEET 5 AA1 6 GLY A 40 GLU A 50 -1 N ILE A 47 O ALA A 105 SHEET 6 AA1 6 ARG A 53 PRO A 56 -1 O ARG A 53 N GLU A 50 SHEET 1 AA2 8 ASN A 194 VAL A 195 0 SHEET 2 AA2 8 GLU A 186 ARG A 191 -1 N ARG A 191 O ASN A 194 SHEET 3 AA2 8 VAL A 149 GLU A 155 1 N VAL A 152 O ILE A 188 SHEET 4 AA2 8 GLU A 264 LEU A 271 1 O PRO A 267 N VAL A 149 SHEET 5 AA2 8 GLU A 255 SER A 260 -1 N ILE A 256 O VAL A 268 SHEET 6 AA2 8 ASN A 202 LYS A 207 -1 N TRP A 204 O LEU A 257 SHEET 7 AA2 8 GLU A 210 ALA A 213 -1 O ILE A 212 N ILE A 205 SHEET 8 AA2 8 PHE A 240 ALA A 242 1 O VAL A 241 N LEU A 211 SHEET 1 AA3 5 ASN A 194 VAL A 195 0 SHEET 2 AA3 5 GLU A 186 ARG A 191 -1 N ARG A 191 O ASN A 194 SHEET 3 AA3 5 VAL A 149 GLU A 155 1 N VAL A 152 O ILE A 188 SHEET 4 AA3 5 GLU A 264 LEU A 271 1 O PRO A 267 N VAL A 149 SHEET 5 AA3 5 LEU A 274 PRO A 275 -1 O LEU A 274 N LEU A 271 LINK C ILE A 164 N LLP A 165 1555 1555 1.34 LINK C LLP A 165 N SER A 166 1555 1555 1.33 CRYST1 61.830 70.020 140.010 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016173 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014282 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007142 0.00000