HEADER HYDROLASE 31-MAY-14 4TM7 TITLE CRYSTAL STRUCTURE OF 6-PHOSPHOGLUCONOLACTONASE FROM MYCOBACTERIUM TITLE 2 SMEGMATIS N131D MUTANT SOAKED WITH CUSO4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 6-PHOSPHOGLUCONOLACTONASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 6-PHOSPHOGLUCONOLACTONASE DEVB; COMPND 5 EC: 3.1.1.31; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: ATCC 700084 / MC(2)155; SOURCE 5 GENE: PGL, MSMEG_3099, MSMEI_3021; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET26 KEYWDS ROSSMANN FOLD, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.FUJIEDA,E.STUTTFELD,T.MAIER REVDAT 3 20-MAR-24 4TM7 1 REMARK LINK REVDAT 2 24-JAN-18 4TM7 1 SOURCE JRNL REMARK REVDAT 1 03-JUN-15 4TM7 0 JRNL AUTH N.FUJIEDA,J.SCHATTI,E.STUTTFELD,K.OHKUBO,T.MAIER,S.FUKUZUMI, JRNL AUTH 2 T.R.WARD JRNL TITL ENZYME REPURPOSING OF A HYDROLASE AS AN EMERGENT PEROXIDASE JRNL TITL 2 UPON METAL BINDING. JRNL REF CHEM SCI V. 6 4060 2015 JRNL REFN ISSN 2041-6520 JRNL PMID 29218172 JRNL DOI 10.1039/C5SC01065A REMARK 2 REMARK 2 RESOLUTION. 1.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1394) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 90375 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 4420 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 74.3394 - 4.3190 1.00 2865 144 0.1846 0.1884 REMARK 3 2 4.3190 - 3.4281 1.00 2887 152 0.1437 0.1679 REMARK 3 3 3.4281 - 2.9948 1.00 2845 160 0.1513 0.1505 REMARK 3 4 2.9948 - 2.7209 1.00 2902 141 0.1500 0.1780 REMARK 3 5 2.7209 - 2.5259 1.00 2834 136 0.1412 0.1769 REMARK 3 6 2.5259 - 2.3770 1.00 2858 149 0.1320 0.1694 REMARK 3 7 2.3770 - 2.2579 1.00 2880 161 0.1243 0.1497 REMARK 3 8 2.2579 - 2.1596 1.00 2857 144 0.1212 0.1730 REMARK 3 9 2.1596 - 2.0765 1.00 2947 118 0.1244 0.1655 REMARK 3 10 2.0765 - 2.0048 1.00 2840 140 0.1248 0.1783 REMARK 3 11 2.0048 - 1.9421 1.00 2857 149 0.1237 0.1538 REMARK 3 12 1.9421 - 1.8866 1.00 2895 168 0.1200 0.1549 REMARK 3 13 1.8866 - 1.8369 1.00 2845 141 0.1131 0.1545 REMARK 3 14 1.8369 - 1.7921 0.99 2869 129 0.1263 0.1559 REMARK 3 15 1.7921 - 1.7514 1.00 2876 148 0.1277 0.1640 REMARK 3 16 1.7514 - 1.7141 1.00 2850 142 0.1351 0.1996 REMARK 3 17 1.7141 - 1.6798 1.00 2875 169 0.1392 0.1924 REMARK 3 18 1.6798 - 1.6481 1.00 2865 154 0.1471 0.1929 REMARK 3 19 1.6481 - 1.6187 1.00 2861 144 0.1528 0.2149 REMARK 3 20 1.6187 - 1.5912 1.00 2885 148 0.1576 0.1892 REMARK 3 21 1.5912 - 1.5656 1.00 2815 150 0.1601 0.1840 REMARK 3 22 1.5656 - 1.5415 1.00 2914 150 0.1703 0.2040 REMARK 3 23 1.5415 - 1.5188 1.00 2788 120 0.1703 0.2127 REMARK 3 24 1.5188 - 1.4974 1.00 2965 184 0.1853 0.2360 REMARK 3 25 1.4974 - 1.4772 1.00 2843 130 0.2049 0.2443 REMARK 3 26 1.4772 - 1.4580 1.00 2870 148 0.2059 0.2413 REMARK 3 27 1.4580 - 1.4398 1.00 2916 162 0.2312 0.2708 REMARK 3 28 1.4398 - 1.4224 1.00 2807 148 0.2311 0.2976 REMARK 3 29 1.4224 - 1.4059 0.99 2874 158 0.2562 0.3185 REMARK 3 30 1.4059 - 1.3901 0.96 2770 133 0.2716 0.3187 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1917 REMARK 3 ANGLE : 1.266 2621 REMARK 3 CHIRALITY : 0.079 296 REMARK 3 PLANARITY : 0.007 357 REMARK 3 DIHEDRAL : 12.136 692 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TM7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000201855. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 90391 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.390 REMARK 200 RESOLUTION RANGE LOW (A) : 74.233 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.53400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.320 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22.5% PEG 4000, 15% GLYCEROL, 150MM REMARK 280 (NH4)2SO4, 3MM CUSO4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -Y,-X,-Z+1/3 REMARK 290 5555 -X+Y,Y,-Z+2/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 148.46667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.23333 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 74.23333 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 148.46667 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CU CU A 313 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 424 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 455 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -11 REMARK 465 SER A -10 REMARK 465 TRP A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 PRO A -6 REMARK 465 GLN A -5 REMARK 465 PHE A -4 REMARK 465 GLU A -3 REMARK 465 LYS A -2 REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 33 OE1 OE2 REMARK 470 GLU A 118 CD OE1 OE2 REMARK 470 VAL A 136 CG1 CG2 REMARK 470 GLU A 166 CD OE1 OE2 REMARK 470 ASP A 174 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 116 CU CU A 309 1.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 92 -55.00 -146.39 REMARK 500 ASP A 115 34.04 -87.74 REMARK 500 ASN A 153 -132.70 47.52 REMARK 500 ASN A 192 39.83 -92.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 PARTLY OCCUPIED COPPER IONS (CU1 305 - CU 320) WERE IDENTIFIED BY REMARK 600 ANOMALOUS DIFFERENCE DENSITY REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 306 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 3 OD1 REMARK 620 2 ASP A 3 OD2 57.0 REMARK 620 3 HIS A 9 ND1 69.5 42.1 REMARK 620 4 HOH A 425 O 72.7 41.8 3.9 REMARK 620 5 HOH A 431 O 71.0 47.1 5.1 7.2 REMARK 620 6 HOH A 435 O 77.1 48.3 8.2 6.6 6.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 315 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 11 OD2 REMARK 620 2 HOH A 434 O 96.8 REMARK 620 3 HOH A 445 O 94.6 162.6 REMARK 620 4 HOH A 551 O 108.0 96.3 92.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 308 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 25 OD2 REMARK 620 2 HOH A 515 O 87.1 REMARK 620 3 HOH A 557 O 148.0 106.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 305 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 67 ND1 REMARK 620 2 HIS A 104 NE2 170.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 317 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 79 OD2 REMARK 620 2 HOH A 559 O 70.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 316 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 81 OD1 REMARK 620 2 CU A 319 CU 64.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 307 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 95 ND1 REMARK 620 2 ASP A 158 OD1 12.1 REMARK 620 3 ASP A 158 OD2 12.3 3.0 REMARK 620 4 ASP A 220 OD1 17.0 5.0 5.5 REMARK 620 5 HOH A 407 O 164.2 159.3 157.0 155.2 REMARK 620 6 HOH A 451 O 93.8 89.7 86.9 87.1 70.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 313 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 112 OE2 REMARK 620 2 GLU A 112 OE2 0.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 318 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 116 OD1 REMARK 620 2 HOH A 404 O 86.7 REMARK 620 3 HOH A 448 O 111.3 70.0 REMARK 620 4 HOH A 550 O 80.8 148.0 142.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 309 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 133 OD1 REMARK 620 2 HOH A 404 O 79.8 REMARK 620 3 HOH A 448 O 80.8 1.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 311 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 151 NE2 REMARK 620 2 SO4 A 304 S 97.4 REMARK 620 3 SO4 A 304 O1 95.3 31.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 312 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 160 OD2 REMARK 620 2 HOH A 555 O 84.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 310 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 207 OD2 REMARK 620 2 HOH A 558 O 88.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 314 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 238 OE1 REMARK 620 2 HOH A 560 O 64.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU1 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 322 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4TM8 RELATED DB: PDB DBREF 4TM7 A 1 244 UNP A0QWX6 A0QWX6_MYCS2 1 244 SEQADV 4TM7 ALA A -11 UNP A0QWX6 EXPRESSION TAG SEQADV 4TM7 SER A -10 UNP A0QWX6 EXPRESSION TAG SEQADV 4TM7 TRP A -9 UNP A0QWX6 EXPRESSION TAG SEQADV 4TM7 SER A -8 UNP A0QWX6 EXPRESSION TAG SEQADV 4TM7 HIS A -7 UNP A0QWX6 EXPRESSION TAG SEQADV 4TM7 PRO A -6 UNP A0QWX6 EXPRESSION TAG SEQADV 4TM7 GLN A -5 UNP A0QWX6 EXPRESSION TAG SEQADV 4TM7 PHE A -4 UNP A0QWX6 EXPRESSION TAG SEQADV 4TM7 GLU A -3 UNP A0QWX6 EXPRESSION TAG SEQADV 4TM7 LYS A -2 UNP A0QWX6 EXPRESSION TAG SEQADV 4TM7 GLY A -1 UNP A0QWX6 EXPRESSION TAG SEQADV 4TM7 ALA A 0 UNP A0QWX6 EXPRESSION TAG SEQADV 4TM7 ASP A 131 UNP A0QWX6 ASN 131 ENGINEERED MUTATION SEQRES 1 A 256 ALA SER TRP SER HIS PRO GLN PHE GLU LYS GLY ALA MET SEQRES 2 A 256 SER ASP THR VAL ILE GLU ARG HIS ALA ASP THR ALA ALA SEQRES 3 A 256 LEU VAL ALA ALA ALA GLY ASP ARG LEU VAL ASP ALA ILE SEQRES 4 A 256 SER SER ALA ILE GLY GLU ARG GLY GLN ALA THR ILE VAL SEQRES 5 A 256 LEU THR GLY GLY GLY THR GLY ILE GLY LEU LEU LYS ARG SEQRES 6 A 256 VAL ARG GLU ARG SER GLY GLU ILE ASP TRP SER LYS VAL SEQRES 7 A 256 HIS ILE TYR TRP GLY ASP GLU ARG PHE VAL PRO GLN ASP SEQRES 8 A 256 ASP ASP GLU ARG ASN ASP LYS GLN ALA ARG GLU ALA LEU SEQRES 9 A 256 LEU ASP HIS ILE GLY ILE PRO PRO VAL ASN VAL HIS ALA SEQRES 10 A 256 MET ALA ALA SER ASP GLY GLU PHE GLY ASP ASP LEU GLU SEQRES 11 A 256 ALA ALA ALA ALA GLY TYR ALA GLN LEU LEU SER ALA ASP SEQRES 12 A 256 PHE ASP SER SER VAL PRO GLY PHE ASP VAL HIS LEU LEU SEQRES 13 A 256 GLY MET GLY GLY GLU GLY HIS VAL ASN SER LEU PHE PRO SEQRES 14 A 256 ASP THR ASP ALA VAL ARG GLU THR GLU ARG LEU VAL VAL SEQRES 15 A 256 GLY VAL SER ASP SER PRO LYS PRO PRO PRO ARG ARG ILE SEQRES 16 A 256 THR LEU THR LEU PRO ALA VAL GLN ASN SER ARG GLU VAL SEQRES 17 A 256 TRP LEU VAL VAL SER GLY GLU ALA LYS ALA ASP ALA VAL SEQRES 18 A 256 ALA ALA ALA VAL GLY GLY ALA ASP PRO VAL ASP ILE PRO SEQRES 19 A 256 ALA ALA GLY ALA VAL GLY ARG GLU ARG THR VAL TRP LEU SEQRES 20 A 256 VAL ASP GLU ALA ALA ALA ALA LYS LEU HET EDO A 301 4 HET EDO A 302 4 HET EDO A 303 4 HET SO4 A 304 5 HET CU1 A 305 1 HET CU A 306 1 HET CU A 307 1 HET CU A 308 1 HET CU A 309 1 HET CU A 310 1 HET CU A 311 1 HET CU A 312 1 HET CU A 313 1 HET CU A 314 1 HET CU A 315 1 HET CU A 316 1 HET CU A 317 1 HET CU A 318 1 HET CU A 319 1 HET CU A 320 1 HET CL A 321 1 HET CL A 322 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETNAM CU1 COPPER (I) ION HETNAM CU COPPER (II) ION HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 3(C2 H6 O2) FORMUL 5 SO4 O4 S 2- FORMUL 6 CU1 CU 1+ FORMUL 7 CU 15(CU 2+) FORMUL 22 CL 2(CL 1-) FORMUL 24 HOH *163(H2 O) HELIX 1 AA1 ASP A 11 GLY A 35 1 25 HELIX 2 AA2 GLY A 44 ARG A 57 1 14 HELIX 3 AA3 SER A 58 ILE A 61 5 4 HELIX 4 AA4 ASP A 62 SER A 64 5 3 HELIX 5 AA5 ARG A 83 LEU A 92 1 10 HELIX 6 AA6 LEU A 93 ILE A 96 5 4 HELIX 7 AA7 PRO A 99 VAL A 103 5 5 HELIX 8 AA8 ASP A 116 SER A 135 1 20 HELIX 9 AA9 THR A 159 GLU A 164 1 6 HELIX 10 AB1 THR A 186 GLN A 191 1 6 HELIX 11 AB2 GLY A 202 ALA A 204 5 3 HELIX 12 AB3 LYS A 205 GLY A 214 1 10 HELIX 13 AB4 ILE A 221 ALA A 226 5 6 SHEET 1 AA1 6 ASP A 3 HIS A 9 0 SHEET 2 AA1 6 ARG A 231 ASP A 237 1 O TRP A 234 N VAL A 5 SHEET 3 AA1 6 SER A 193 VAL A 200 1 N LEU A 198 O LEU A 235 SHEET 4 AA1 6 PHE A 139 LEU A 144 1 N PHE A 139 O ARG A 194 SHEET 5 AA1 6 ALA A 37 LEU A 41 1 N VAL A 40 O LEU A 143 SHEET 6 AA1 6 VAL A 66 TRP A 70 1 O TYR A 69 N LEU A 41 SHEET 1 AA2 3 ASP A 72 ARG A 74 0 SHEET 2 AA2 3 ARG A 182 LEU A 185 -1 O ILE A 183 N GLU A 73 SHEET 3 AA2 3 VAL A 169 VAL A 172 -1 N VAL A 172 O ARG A 182 LINK OD1 ASP A 3 CU CU A 306 1555 4665 2.20 LINK OD2 ASP A 3 CU CU A 306 1555 4665 2.38 LINK ND1 HIS A 9 CU CU A 306 1555 1555 2.05 LINK OD2 ASP A 11 CU CU A 315 1555 1555 1.84 LINK OD2 ASP A 25 CU CU A 308 1555 1555 2.21 LINK ND1 HIS A 67 CU CU1 A 305 1555 1555 2.00 LINK OD2 ASP A 79 CU CU A 317 1555 1555 2.42 LINK OD1BASP A 81 CU CU A 316 1555 1555 2.60 LINK OD1BASP A 81 CU CU A 319 1555 1555 2.67 LINK ND1 HIS A 95 CU CU A 307 1555 1555 1.97 LINK NE2 HIS A 104 CU CU1 A 305 1555 1555 1.92 LINK OE2 GLU A 112 CU CU A 313 1555 1555 2.65 LINK OE2 GLU A 112 CU CU A 313 1555 6535 2.58 LINK OD1 ASP A 116 CU CU A 318 1555 1555 2.25 LINK OD1 ASP A 133 CU CU A 309 1555 6535 2.04 LINK NE2 HIS A 151 CU CU A 311 1555 1555 2.13 LINK OD1 ASP A 158 CU CU A 307 1555 1455 2.49 LINK OD2 ASP A 158 CU CU A 307 1555 1455 2.14 LINK OD2 ASP A 160 CU CU A 312 1555 1555 1.97 LINK OD2 ASP A 207 CU CU A 310 1555 1555 1.92 LINK OD1 ASP A 220 CU CU A 307 1555 1455 1.97 LINK OE1 GLU A 238 CU CU A 314 1555 1555 2.04 LINK S SO4 A 304 CU CU A 311 1555 1555 2.67 LINK O1 SO4 A 304 CU CU A 311 1555 1555 1.84 LINK CU CU A 306 O HOH A 425 1555 1555 1.87 LINK CU CU A 306 O HOH A 431 1555 4665 2.51 LINK CU CU A 306 O HOH A 435 1555 4665 2.12 LINK CU CU A 307 O HOH A 407 1555 1655 1.97 LINK CU CU A 307 O HOH A 451 1555 1555 2.36 LINK CU CU A 308 O HOH A 515 1555 1555 2.30 LINK CU CU A 308 O HOH A 557 1555 1555 2.59 LINK CU CU A 309 O HOH A 404 1555 6535 2.16 LINK CU CU A 309 O HOH A 448 1555 1555 2.61 LINK CU CU A 310 O HOH A 558 1555 1555 2.44 LINK CU CU A 312 O HOH A 555 1555 1555 1.86 LINK CU CU A 314 O HOH A 560 1555 1555 2.41 LINK CU CU A 315 O HOH A 434 1555 1555 2.05 LINK CU CU A 315 O HOH A 445 1555 1555 2.33 LINK CU CU A 315 O HOH A 551 1555 1555 2.39 LINK CU CU A 316 CU CU A 319 1555 1555 2.37 LINK CU CU A 317 O HOH A 559 1555 1555 2.06 LINK CU CU A 318 O HOH A 404 1555 6535 1.94 LINK CU CU A 318 O HOH A 448 1555 1555 1.91 LINK CU CU A 318 O HOH A 550 1555 1555 2.63 CISPEP 1 VAL A 136 PRO A 137 0 -2.80 CISPEP 2 PRO A 178 PRO A 179 0 -2.63 SITE 1 AC1 6 GLN A 36 HIS A 67 TYR A 69 ASP A 131 SITE 2 AC1 6 SER A 134 SER A 135 SITE 1 AC2 4 GLU A 112 GLY A 123 CU A 313 HOH A 461 SITE 1 AC3 4 ALA A 26 ASP A 140 GLU A 195 HOH A 552 SITE 1 AC4 5 ARG A 74 HIS A 151 LYS A 177 ARG A 182 SITE 2 AC4 5 CU A 311 SITE 1 AC5 4 HIS A 67 ASN A 102 HIS A 104 HOH A 428 SITE 1 AC6 5 ASP A 3 HIS A 9 HOH A 425 HOH A 431 SITE 2 AC6 5 HOH A 435 SITE 1 AC7 5 HIS A 95 ASP A 158 ASP A 220 HOH A 407 SITE 2 AC7 5 HOH A 451 SITE 1 AC8 4 ASP A 25 ARG A 57 HOH A 515 HOH A 557 SITE 1 AC9 5 ASP A 116 ASP A 133 CU A 318 HOH A 404 SITE 2 AC9 5 HOH A 448 SITE 1 AD1 2 ASP A 207 HOH A 558 SITE 1 AD2 3 HIS A 151 ASN A 153 SO4 A 304 SITE 1 AD3 2 ASP A 160 HOH A 555 SITE 1 AD4 3 GLU A 112 EDO A 302 HOH A 455 SITE 1 AD5 2 GLU A 238 HOH A 560 SITE 1 AD6 4 ASP A 11 HOH A 434 HOH A 445 HOH A 551 SITE 1 AD7 3 ASP A 81 GLU A 82 CU A 319 SITE 1 AD8 2 ASP A 79 HOH A 559 SITE 1 AD9 6 ASP A 116 CU A 309 CL A 321 HOH A 404 SITE 2 AD9 6 HOH A 448 HOH A 550 SITE 1 AE1 3 ASP A 80 ASP A 81 CU A 316 SITE 1 AE2 3 GLU A 90 HOH A 536 HOH A 556 SITE 1 AE3 2 CU A 318 HOH A 550 SITE 1 AE4 1 ASP A 81 CRYST1 42.520 42.520 222.700 90.00 90.00 120.00 P 32 1 2 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023518 0.013578 0.000000 0.00000 SCALE2 0.000000 0.027157 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004490 0.00000