HEADER TRANSFERASE 31-AUG-98 4TMK TITLE COMPLEX OF E. COLI THYMIDYLATE KINASE WITH THE BISUBSTRATE INHIBITOR TITLE 2 TP5A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (THYMIDYLATE KINASE); COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.4.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ATP:DTMP PHOSPHOTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.LAVIE,N.OSTERMANN,I.SCHLICHTING REVDAT 6 27-DEC-23 4TMK 1 REMARK SEQADV REVDAT 5 13-JUL-11 4TMK 1 VERSN REVDAT 4 24-FEB-09 4TMK 1 VERSN REVDAT 3 01-APR-03 4TMK 1 JRNL REVDAT 2 22-DEC-99 4TMK 4 HEADER COMPND REMARK JRNL REVDAT 2 2 4 ATOM SOURCE SEQRES REVDAT 1 25-NOV-98 4TMK 0 JRNL AUTH A.LAVIE,N.OSTERMANN,R.BRUNDIERS,R.S.GOODY,J.REINSTEIN, JRNL AUTH 2 M.KONRAD,I.SCHLICHTING JRNL TITL STRUCTURAL BASIS FOR EFFICIENT PHOSPHORYLATION OF JRNL TITL 2 3'-AZIDOTHYMIDINE MONOPHOSPHATE BY ESCHERICHIA COLI JRNL TITL 3 THYMIDYLATE KINASE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 95 14045 1998 JRNL REFN ISSN 0027-8424 JRNL PMID 9826650 JRNL DOI 10.1073/PNAS.95.24.14045 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 21836 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1067 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2570 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE : 0.2983 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.99 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 142 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1641 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 55 REMARK 3 SOLVENT ATOMS : 163 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.620 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.63 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.159 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : PARAM11.DNA REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TP5A.TOPH REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 RESIDUES ARG51 AND GLN180 WERE MODELLED IN TWO ALTERNATE REMARK 3 CONFORMATIONS. 5 ATOMS OF THE BISUBSTRATE INHIBITOR TP5A REMARK 3 WERE MODELLED IN TWO CONFORMATIONS REMARK 4 REMARK 4 4TMK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB. REMARK 100 THE DEPOSITION ID IS D_1000008069. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21854 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 19.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIR REMARK 200 SOFTWARE USED: MLPHARE, DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 75.85000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.79202 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 24.82667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 75.85000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 43.79202 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 24.82667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 75.85000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 43.79202 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 24.82667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 75.85000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 43.79202 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 24.82667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 75.85000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 43.79202 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 24.82667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 75.85000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 43.79202 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 24.82667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 87.58404 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 49.65333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 87.58404 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 49.65333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 87.58404 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 49.65333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 87.58404 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 49.65333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 87.58404 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 49.65333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 87.58404 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 49.65333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 75.85000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 131.37605 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -75.85000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 131.37605 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 -75.85000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 43.79202 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 24.82667 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 175.16807 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 24.82667 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 75.85000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 43.79202 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 24.82667 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 175.16807 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 24.82667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 212 REMARK 465 ALA A 213 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 2 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 118 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 100 148.73 84.06 REMARK 500 HIS A 101 -148.48 -161.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE T5A A 214 DBREF 4TMK A 1 213 UNP P0A720 KTHY_ECOLI 1 213 SEQADV 4TMK LEU A 54 UNP P0A720 VAL 54 CONFLICT SEQRES 1 A 213 MET ARG SER LYS TYR ILE VAL ILE GLU GLY LEU GLU GLY SEQRES 2 A 213 ALA GLY LYS THR THR ALA ARG ASN VAL VAL VAL GLU THR SEQRES 3 A 213 LEU GLU GLN LEU GLY ILE ARG ASP MET VAL PHE THR ARG SEQRES 4 A 213 GLU PRO GLY GLY THR GLN LEU ALA GLU LYS LEU ARG SER SEQRES 5 A 213 LEU LEU LEU ASP ILE LYS SER VAL GLY ASP GLU VAL ILE SEQRES 6 A 213 THR ASP LYS ALA GLU VAL LEU MET PHE TYR ALA ALA ARG SEQRES 7 A 213 VAL GLN LEU VAL GLU THR VAL ILE LYS PRO ALA LEU ALA SEQRES 8 A 213 ASN GLY THR TRP VAL ILE GLY ASP ARG HIS ASP LEU SER SEQRES 9 A 213 THR GLN ALA TYR GLN GLY GLY GLY ARG GLY ILE ASP GLN SEQRES 10 A 213 HIS MET LEU ALA THR LEU ARG ASP ALA VAL LEU GLY ASP SEQRES 11 A 213 PHE ARG PRO ASP LEU THR LEU TYR LEU ASP VAL THR PRO SEQRES 12 A 213 GLU VAL GLY LEU LYS ARG ALA ARG ALA ARG GLY GLU LEU SEQRES 13 A 213 ASP ARG ILE GLU GLN GLU SER PHE ASP PHE PHE ASN ARG SEQRES 14 A 213 THR ARG ALA ARG TYR LEU GLU LEU ALA ALA GLN ASP LYS SEQRES 15 A 213 SER ILE HIS THR ILE ASP ALA THR GLN PRO LEU GLU ALA SEQRES 16 A 213 VAL MET ASP ALA ILE ARG THR THR VAL THR HIS TRP VAL SEQRES 17 A 213 LYS GLU LEU ASP ALA HET T5A A 214 60 HETNAM T5A P1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE FORMUL 2 T5A C20 H30 N7 O23 P5 FORMUL 3 HOH *163(H2 O) HELIX 1 1 LYS A 16 GLN A 29 1 14 HELIX 2 2 GLN A 45 LEU A 55 1 11 HELIX 3 3 ASP A 67 THR A 84 1 18 HELIX 4 4 ILE A 86 ASN A 92 1 7 HELIX 5 5 ASP A 102 TYR A 108 1 7 HELIX 6 6 GLN A 117 LEU A 128 1 12 HELIX 7 7 PRO A 143 ARG A 153 1 11 HELIX 8 8 PHE A 164 GLN A 180 1 17 HELIX 9 9 LEU A 193 LYS A 209 1 17 SHEET 1 A 5 ILE A 184 ASP A 188 0 SHEET 2 A 5 LEU A 135 ASP A 140 1 N THR A 136 O HIS A 185 SHEET 3 A 5 TYR A 5 GLY A 10 1 N VAL A 7 O LEU A 135 SHEET 4 A 5 TRP A 95 ASP A 99 1 N VAL A 96 O ILE A 6 SHEET 5 A 5 MET A 35 ARG A 39 1 N VAL A 36 O TRP A 95 CISPEP 1 GLU A 40 PRO A 41 0 -0.33 SITE 1 AC1 36 GLU A 12 GLY A 13 ALA A 14 GLY A 15 SITE 2 AC1 36 LYS A 16 THR A 17 ARG A 20 ASN A 21 SITE 3 AC1 36 GLU A 25 ARG A 39 GLU A 40 ARG A 51 SITE 4 AC1 36 LEU A 55 PHE A 74 ARG A 78 ARG A 100 SITE 5 AC1 36 SER A 104 THR A 105 TYR A 108 GLN A 109 SITE 6 AC1 36 ARG A 149 ARG A 153 ASP A 157 ILE A 159 SITE 7 AC1 36 HOH A1013 HOH A1025 HOH A1026 HOH A1027 SITE 8 AC1 36 HOH A1028 HOH A1030 HOH A1036 HOH A1037 SITE 9 AC1 36 HOH A1038 HOH A1050 HOH A1052 HOH A1066 CRYST1 151.700 151.700 74.480 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006592 0.003806 0.000000 0.00000 SCALE2 0.000000 0.007612 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013426 0.00000