HEADER MEMBRANE PROTEIN 07-JUN-14 4TPJ TITLE SELECTIVITY MECHANISM OF A BACTERIAL HOMOLOGUE OF THE HUMAN DRUG TITLE 2 PEPTIDE TRANSPORTERS PEPT1 AND PEPT2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTON:OLIGOPEPTIDE SYMPORTER POT FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ALA-ALA-ALA; COMPND 7 CHAIN: C, E; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS; SOURCE 3 ORGANISM_TAXID: 211586; SOURCE 4 STRAIN: MR-1; SOURCE 5 GENE: SO_1277; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS MR-1; SOURCE 10 ORGANISM_TAXID: 211586; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MEMBRANE PROTEIN, SECONDARY ACTIVE TRANSPORTER, COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.GUETTOU,E.QUISTGAARD,M.RABA,P.MOBERG,C.LOW,P.NORDLUND REVDAT 8 20-DEC-23 4TPJ 1 REMARK REVDAT 7 13-SEP-17 4TPJ 1 REMARK REVDAT 6 06-JUL-16 4TPJ 1 REVDAT 5 17-DEC-14 4TPJ 1 REMARK REVDAT 4 27-AUG-14 4TPJ 1 REMARK REVDAT 3 13-AUG-14 4TPJ 1 JRNL REVDAT 2 06-AUG-14 4TPJ 1 AUTHOR JRNL REVDAT 1 09-JUL-14 4TPJ 0 JRNL AUTH F.GUETTOU,E.M.QUISTGAARD,M.RABA,P.MOBERG,C.LOW,P.NORDLUND JRNL TITL SELECTIVITY MECHANISM OF A BACTERIAL HOMOLOG OF THE HUMAN JRNL TITL 2 DRUG-PEPTIDE TRANSPORTERS PEPT1 AND PEPT2. JRNL REF NAT.STRUCT.MOL.BIOL. V. 21 728 2014 JRNL REFN ESSN 1545-9985 JRNL PMID 25064511 JRNL DOI 10.1038/NSMB.2860 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.9 REMARK 3 NUMBER OF REFLECTIONS : 25519 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1299 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 0.0000 - 6.6528 1.00 3262 178 0.2668 0.2902 REMARK 3 2 6.6528 - 5.2827 1.00 3141 171 0.2906 0.2915 REMARK 3 3 5.2827 - 4.6156 1.00 3113 164 0.1997 0.2655 REMARK 3 4 4.6156 - 4.1939 1.00 3084 155 0.2049 0.2574 REMARK 3 5 4.1939 - 3.8934 1.00 3079 159 0.2318 0.2743 REMARK 3 6 3.8934 - 3.6640 1.00 3061 168 0.2338 0.3459 REMARK 3 7 3.6640 - 3.4805 0.85 2557 143 0.2506 0.3297 REMARK 3 8 3.4805 - 3.3291 0.62 1899 105 0.2735 0.3200 REMARK 3 9 3.3291 - 3.2009 0.34 1024 56 0.2744 0.4336 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 7107 REMARK 3 ANGLE : 1.425 9682 REMARK 3 CHIRALITY : 0.056 1119 REMARK 3 PLANARITY : 0.007 1158 REMARK 3 DIHEDRAL : 15.621 2480 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 38.0816 -63.7925 -23.8176 REMARK 3 T TENSOR REMARK 3 T11: 0.6500 T22: 0.5970 REMARK 3 T33: 0.4403 T12: -0.0964 REMARK 3 T13: 0.2157 T23: -0.0824 REMARK 3 L TENSOR REMARK 3 L11: 1.5021 L22: 6.1096 REMARK 3 L33: 2.7696 L12: -0.7602 REMARK 3 L13: 1.4564 L23: -0.3847 REMARK 3 S TENSOR REMARK 3 S11: 0.0417 S12: -0.4084 S13: 0.1603 REMARK 3 S21: 0.6378 S22: -0.1560 S23: -0.0603 REMARK 3 S31: 0.0972 S32: -0.0856 S33: 0.1077 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 21.7894 -16.8619 -30.4680 REMARK 3 T TENSOR REMARK 3 T11: 0.6287 T22: 0.6751 REMARK 3 T33: 0.5354 T12: -0.1240 REMARK 3 T13: 0.2679 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 1.2706 L22: 3.7397 REMARK 3 L33: 1.2546 L12: -0.2585 REMARK 3 L13: 0.3152 L23: 0.0763 REMARK 3 S TENSOR REMARK 3 S11: 0.1609 S12: -0.4152 S13: 0.0501 REMARK 3 S21: 0.5767 S22: -0.1407 S23: 0.3635 REMARK 3 S31: 0.0791 S32: -0.4905 S33: -0.0253 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TPJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000202017. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25529 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 47.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.9 REMARK 200 DATA REDUNDANCY : 14.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 27.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.420 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4LEP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M PHOSPHATE CITRATE PH 4.5, 46% REMARK 280 PEG300, 0.12M ZNCL2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.49500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 101.85500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.78000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 101.85500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.49500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.78000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 LEU A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 ASN A 6 REMARK 465 GLN A 7 REMARK 465 GLY A 134 REMARK 465 ASP A 135 REMARK 465 ASP A 136 REMARK 465 PHE A 259 REMARK 465 PHE A 260 REMARK 465 HIS A 261 REMARK 465 LEU A 262 REMARK 465 ILE A 263 REMARK 465 ARG A 264 REMARK 465 THR A 265 REMARK 465 SER A 266 REMARK 465 GLU A 267 REMARK 465 PRO A 268 REMARK 465 SER A 269 REMARK 465 GLU A 270 REMARK 465 ARG A 271 REMARK 465 ALA A 272 REMARK 465 GLY A 273 REMARK 465 LEU A 274 REMARK 465 SER A 343 REMARK 465 TYR A 344 REMARK 465 SER A 345 REMARK 465 TRP A 346 REMARK 465 ALA A 347 REMARK 465 GLY A 348 REMARK 465 ARG A 349 REMARK 465 ASN A 350 REMARK 465 ASN A 351 REMARK 465 LYS A 352 REMARK 465 ASP A 353 REMARK 465 PHE A 354 REMARK 465 SER A 355 REMARK 465 VAL A 417 REMARK 465 PRO A 418 REMARK 465 ALA A 419 REMARK 465 ARG A 420 REMARK 465 MET A 421 REMARK 465 GLY A 422 REMARK 465 GLY A 423 REMARK 465 PHE A 424 REMARK 465 GLU A 493 REMARK 465 SER A 494 REMARK 465 HIS A 495 REMARK 465 HIS A 496 REMARK 465 ALA A 497 REMARK 465 HIS A 498 REMARK 465 SER A 499 REMARK 465 SER A 500 REMARK 465 ILE A 501 REMARK 465 GLU A 502 REMARK 465 ASN A 503 REMARK 465 ASN A 504 REMARK 465 ALA A 505 REMARK 465 ALA A 506 REMARK 465 ALA A 507 REMARK 465 SER A 508 REMARK 465 LEU A 509 REMARK 465 ARG A 510 REMARK 465 ASP A 511 REMARK 465 VAL A 512 REMARK 465 LYS A 513 REMARK 465 ALA A 514 REMARK 465 GLU A 515 REMARK 465 GLN A 516 REMARK 465 ALA A 517 REMARK 465 GLU A 518 REMARK 465 ASN A 519 REMARK 465 LEU A 520 REMARK 465 TYR A 521 REMARK 465 PHE A 522 REMARK 465 GLN A 523 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 LEU B 3 REMARK 465 GLY B 4 REMARK 465 THR B 5 REMARK 465 ASN B 6 REMARK 465 GLN B 7 REMARK 465 GLY B 134 REMARK 465 ASP B 135 REMARK 465 ASP B 136 REMARK 465 LEU B 262 REMARK 465 ILE B 263 REMARK 465 ARG B 264 REMARK 465 THR B 265 REMARK 465 SER B 266 REMARK 465 GLU B 267 REMARK 465 PRO B 268 REMARK 465 SER B 269 REMARK 465 GLU B 270 REMARK 465 ARG B 271 REMARK 465 ALA B 272 REMARK 465 SER B 343 REMARK 465 TYR B 344 REMARK 465 SER B 345 REMARK 465 TRP B 346 REMARK 465 ALA B 347 REMARK 465 GLY B 348 REMARK 465 ARG B 349 REMARK 465 ASN B 350 REMARK 465 ASN B 351 REMARK 465 LYS B 352 REMARK 465 ASP B 353 REMARK 465 PHE B 354 REMARK 465 SER B 355 REMARK 465 VAL B 417 REMARK 465 PRO B 418 REMARK 465 ALA B 419 REMARK 465 ARG B 420 REMARK 465 MET B 421 REMARK 465 GLY B 422 REMARK 465 GLY B 423 REMARK 465 PHE B 424 REMARK 465 GLU B 493 REMARK 465 SER B 494 REMARK 465 HIS B 495 REMARK 465 HIS B 496 REMARK 465 ALA B 497 REMARK 465 HIS B 498 REMARK 465 SER B 499 REMARK 465 SER B 500 REMARK 465 ILE B 501 REMARK 465 GLU B 502 REMARK 465 ASN B 503 REMARK 465 ASN B 504 REMARK 465 ALA B 505 REMARK 465 ALA B 506 REMARK 465 ALA B 507 REMARK 465 SER B 508 REMARK 465 LEU B 509 REMARK 465 ARG B 510 REMARK 465 ASP B 511 REMARK 465 VAL B 512 REMARK 465 LYS B 513 REMARK 465 ALA B 514 REMARK 465 GLU B 515 REMARK 465 GLN B 516 REMARK 465 ALA B 517 REMARK 465 GLU B 518 REMARK 465 ASN B 519 REMARK 465 LEU B 520 REMARK 465 TYR B 521 REMARK 465 PHE B 522 REMARK 465 GLN B 523 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 174 CG OD1 ND2 REMARK 470 GLU A 175 CG CD OE1 OE2 REMARK 470 PHE A 176 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 201 CG CD CE NZ REMARK 470 SER A 202 OG REMARK 470 LEU A 203 CG CD1 CD2 REMARK 470 ASN A 205 CG OD1 ND2 REMARK 470 TYR A 206 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 208 OG REMARK 470 GLU A 209 CG CD OE1 OE2 REMARK 470 PRO A 210 CG CD REMARK 470 ASP A 211 CG OD1 OD2 REMARK 470 THR A 212 OG1 CG2 REMARK 470 ARG A 213 CG CD NE CZ NH1 NH2 REMARK 470 PRO A 214 CG CD REMARK 470 VAL A 215 CG1 CG2 REMARK 470 ASN B 174 CG OD1 ND2 REMARK 470 GLU B 175 CG CD OE1 OE2 REMARK 470 PHE B 176 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 201 CG CD CE NZ REMARK 470 SER B 202 OG REMARK 470 LEU B 203 CG CD1 CD2 REMARK 470 ASN B 205 CG OD1 ND2 REMARK 470 TYR B 206 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER B 208 OG REMARK 470 GLU B 209 CG CD OE1 OE2 REMARK 470 PRO B 210 CG CD REMARK 470 ASP B 211 CG OD1 OD2 REMARK 470 THR B 212 OG1 CG2 REMARK 470 ARG B 213 CG CD NE CZ NH1 NH2 REMARK 470 PRO B 214 CG CD REMARK 470 VAL B 215 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR B 395 OG SER B 399 2.17 REMARK 500 OE1 GLN B 292 NE2 GLN B 437 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 210 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 75 -62.54 -129.62 REMARK 500 GLU A 101 40.91 -92.87 REMARK 500 TYR A 147 -9.42 -56.23 REMARK 500 ASN A 174 -47.89 55.13 REMARK 500 PHE A 176 -73.74 -77.43 REMARK 500 MET A 199 20.28 -143.70 REMARK 500 HIS A 200 -78.82 -71.84 REMARK 500 ASN A 205 -77.72 47.65 REMARK 500 SER A 208 145.32 86.78 REMARK 500 LEU A 278 -72.07 -50.30 REMARK 500 THR A 296 -89.43 -115.59 REMARK 500 TRP A 308 1.59 -65.63 REMARK 500 PHE A 313 103.30 -24.30 REMARK 500 THR A 315 -165.85 -115.27 REMARK 500 TRP A 318 -128.53 -118.33 REMARK 500 SER A 387 -78.91 177.58 REMARK 500 SER A 388 -64.22 70.76 REMARK 500 LEU A 408 44.38 -72.52 REMARK 500 ILE B 75 -63.25 -127.95 REMARK 500 GLU B 101 37.12 -92.44 REMARK 500 ASN B 174 -42.38 53.49 REMARK 500 PHE B 176 -74.50 -79.64 REMARK 500 MET B 199 17.55 -140.28 REMARK 500 HIS B 200 -79.57 -75.36 REMARK 500 ASN B 205 -81.06 49.87 REMARK 500 SER B 208 146.77 86.84 REMARK 500 LEU B 278 -73.38 -51.76 REMARK 500 THR B 296 -92.57 -118.15 REMARK 500 PHE B 313 101.88 -25.64 REMARK 500 THR B 315 -166.79 -115.02 REMARK 500 TRP B 318 -127.37 -116.89 REMARK 500 ASN B 383 51.96 -140.29 REMARK 500 SER B 387 -75.83 175.72 REMARK 500 SER B 388 -70.11 70.57 REMARK 500 LEU B 408 49.17 -81.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LMT A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LMT B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LMT B 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4TPH RELATED DB: PDB REMARK 900 RELATED ID: 4TPG RELATED DB: PDB DBREF 4TPJ A 1 516 UNP Q8EHE6 Q8EHE6_SHEON 1 516 DBREF 4TPJ B 1 516 UNP Q8EHE6 Q8EHE6_SHEON 1 516 DBREF 4TPJ C 10 12 PDB 4TPJ 4TPJ 10 12 DBREF 4TPJ E 10 12 PDB 4TPJ 4TPJ 10 12 SEQADV 4TPJ ALA A 517 UNP Q8EHE6 EXPRESSION TAG SEQADV 4TPJ GLU A 518 UNP Q8EHE6 EXPRESSION TAG SEQADV 4TPJ ASN A 519 UNP Q8EHE6 EXPRESSION TAG SEQADV 4TPJ LEU A 520 UNP Q8EHE6 EXPRESSION TAG SEQADV 4TPJ TYR A 521 UNP Q8EHE6 EXPRESSION TAG SEQADV 4TPJ PHE A 522 UNP Q8EHE6 EXPRESSION TAG SEQADV 4TPJ GLN A 523 UNP Q8EHE6 EXPRESSION TAG SEQADV 4TPJ ALA B 517 UNP Q8EHE6 EXPRESSION TAG SEQADV 4TPJ GLU B 518 UNP Q8EHE6 EXPRESSION TAG SEQADV 4TPJ ASN B 519 UNP Q8EHE6 EXPRESSION TAG SEQADV 4TPJ LEU B 520 UNP Q8EHE6 EXPRESSION TAG SEQADV 4TPJ TYR B 521 UNP Q8EHE6 EXPRESSION TAG SEQADV 4TPJ PHE B 522 UNP Q8EHE6 EXPRESSION TAG SEQADV 4TPJ GLN B 523 UNP Q8EHE6 EXPRESSION TAG SEQRES 1 A 523 MET THR LEU GLY THR ASN GLN VAL SER LYS THR HIS SER SEQRES 2 A 523 PHE MET THR VAL SER LEU ILE GLU LEU TRP GLU ARG PHE SEQRES 3 A 523 GLY TYR TYR GLY MET GLN ALA LEU ILE VAL TYR PHE MET SEQRES 4 A 523 VAL GLN ARG LEU GLY PHE ASP ASP SER ARG ALA ASN LEU SEQRES 5 A 523 VAL TRP SER ALA CYS ALA ALA LEU ILE TYR VAL SER PRO SEQRES 6 A 523 ALA ILE GLY GLY TRP VAL GLY ASP LYS ILE LEU GLY THR SEQRES 7 A 523 LYS ARG THR MET LEU LEU GLY ALA GLY ILE LEU SER VAL SEQRES 8 A 523 GLY TYR ALA LEU MET THR VAL PRO THR GLU ASN THR TRP SEQRES 9 A 523 PHE MET PHE SER ALA LEU GLY VAL ILE VAL VAL GLY ASN SEQRES 10 A 523 GLY LEU PHE LYS PRO ASN ALA GLY ASN LEU VAL ARG LYS SEQRES 11 A 523 ILE TYR GLU GLY ASP ASP SER LYS ILE ASP SER ALA PHE SEQRES 12 A 523 THR ILE TYR TYR MET ALA VAL ASN VAL GLY SER THR PHE SEQRES 13 A 523 SER MET LEU LEU THR PRO TRP ILE LYS ASP TYR VAL ASN SEQRES 14 A 523 ALA GLN TYR GLY ASN GLU PHE GLY TRP HIS ALA ALA PHE SEQRES 15 A 523 ALA VAL CYS CYS VAL GLY ILE LEU VAL GLY LEU GLY ASN SEQRES 16 A 523 TYR ALA LEU MET HIS LYS SER LEU ALA ASN TYR GLY SER SEQRES 17 A 523 GLU PRO ASP THR ARG PRO VAL ASN LYS LYS SER LEU ALA SEQRES 18 A 523 ILE VAL LEU ALA LEU ALA ALA LEU SER VAL VAL ALA SER SEQRES 19 A 523 ALA ILE ILE LEU GLU TYR GLU ASP VAL ALA ARG VAL PHE SEQRES 20 A 523 VAL TYR ALA ALA GLY VAL ALA VAL LEU GLY ILE PHE PHE SEQRES 21 A 523 HIS LEU ILE ARG THR SER GLU PRO SER GLU ARG ALA GLY SEQRES 22 A 523 LEU ILE ALA ALA LEU ILE LEU THR VAL GLN THR VAL PHE SEQRES 23 A 523 PHE PHE ILE PHE TYR GLN GLN MET SER THR SER LEU ALA SEQRES 24 A 523 LEU PHE ALA LEU ARG ASN VAL ASP TRP ASP PHE GLN VAL SEQRES 25 A 523 PHE GLY THR HIS LEU TRP THR TRP SER PRO ALA GLN PHE SEQRES 26 A 523 GLN ALA LEU ASN PRO ILE TRP ILE MET VAL LEU SER PRO SEQRES 27 A 523 VAL LEU ALA TRP SER TYR SER TRP ALA GLY ARG ASN ASN SEQRES 28 A 523 LYS ASP PHE SER ILE ALA ALA LYS PHE ALA LEU GLY PHE SEQRES 29 A 523 ALA VAL VAL ALA ILE GLY PHE PHE ILE TYR GLY PHE ALA SEQRES 30 A 523 GLY GLN PHE ALA VAL ASN GLY LYS THR SER SER TRP VAL SEQRES 31 A 523 MET ILE TRP GLY TYR ALA SER TYR SER LEU GLY GLU LEU SEQRES 32 A 523 LEU VAL SER GLY LEU GLY LEU ALA MET ILE ALA ARG TYR SEQRES 33 A 523 VAL PRO ALA ARG MET GLY GLY PHE MET MET GLY ALA TYR SEQRES 34 A 523 PHE VAL ALA SER GLY ILE SER GLN TYR LEU GLY GLY VAL SEQRES 35 A 523 VAL ALA ASN PHE ALA SER VAL PRO GLN ASP LEU VAL ASP SEQRES 36 A 523 PRO LEU GLN THR LEU PRO VAL TYR THR ASN LEU PHE ASN SEQRES 37 A 523 LYS LEU GLY VAL ALA ALA VAL VAL CYS THR ILE ILE ALA SEQRES 38 A 523 LEU ALA VAL LEU PRO LEU MET ARG ARG LEU THR GLU SER SEQRES 39 A 523 HIS HIS ALA HIS SER SER ILE GLU ASN ASN ALA ALA ALA SEQRES 40 A 523 SER LEU ARG ASP VAL LYS ALA GLU GLN ALA GLU ASN LEU SEQRES 41 A 523 TYR PHE GLN SEQRES 1 B 523 MET THR LEU GLY THR ASN GLN VAL SER LYS THR HIS SER SEQRES 2 B 523 PHE MET THR VAL SER LEU ILE GLU LEU TRP GLU ARG PHE SEQRES 3 B 523 GLY TYR TYR GLY MET GLN ALA LEU ILE VAL TYR PHE MET SEQRES 4 B 523 VAL GLN ARG LEU GLY PHE ASP ASP SER ARG ALA ASN LEU SEQRES 5 B 523 VAL TRP SER ALA CYS ALA ALA LEU ILE TYR VAL SER PRO SEQRES 6 B 523 ALA ILE GLY GLY TRP VAL GLY ASP LYS ILE LEU GLY THR SEQRES 7 B 523 LYS ARG THR MET LEU LEU GLY ALA GLY ILE LEU SER VAL SEQRES 8 B 523 GLY TYR ALA LEU MET THR VAL PRO THR GLU ASN THR TRP SEQRES 9 B 523 PHE MET PHE SER ALA LEU GLY VAL ILE VAL VAL GLY ASN SEQRES 10 B 523 GLY LEU PHE LYS PRO ASN ALA GLY ASN LEU VAL ARG LYS SEQRES 11 B 523 ILE TYR GLU GLY ASP ASP SER LYS ILE ASP SER ALA PHE SEQRES 12 B 523 THR ILE TYR TYR MET ALA VAL ASN VAL GLY SER THR PHE SEQRES 13 B 523 SER MET LEU LEU THR PRO TRP ILE LYS ASP TYR VAL ASN SEQRES 14 B 523 ALA GLN TYR GLY ASN GLU PHE GLY TRP HIS ALA ALA PHE SEQRES 15 B 523 ALA VAL CYS CYS VAL GLY ILE LEU VAL GLY LEU GLY ASN SEQRES 16 B 523 TYR ALA LEU MET HIS LYS SER LEU ALA ASN TYR GLY SER SEQRES 17 B 523 GLU PRO ASP THR ARG PRO VAL ASN LYS LYS SER LEU ALA SEQRES 18 B 523 ILE VAL LEU ALA LEU ALA ALA LEU SER VAL VAL ALA SER SEQRES 19 B 523 ALA ILE ILE LEU GLU TYR GLU ASP VAL ALA ARG VAL PHE SEQRES 20 B 523 VAL TYR ALA ALA GLY VAL ALA VAL LEU GLY ILE PHE PHE SEQRES 21 B 523 HIS LEU ILE ARG THR SER GLU PRO SER GLU ARG ALA GLY SEQRES 22 B 523 LEU ILE ALA ALA LEU ILE LEU THR VAL GLN THR VAL PHE SEQRES 23 B 523 PHE PHE ILE PHE TYR GLN GLN MET SER THR SER LEU ALA SEQRES 24 B 523 LEU PHE ALA LEU ARG ASN VAL ASP TRP ASP PHE GLN VAL SEQRES 25 B 523 PHE GLY THR HIS LEU TRP THR TRP SER PRO ALA GLN PHE SEQRES 26 B 523 GLN ALA LEU ASN PRO ILE TRP ILE MET VAL LEU SER PRO SEQRES 27 B 523 VAL LEU ALA TRP SER TYR SER TRP ALA GLY ARG ASN ASN SEQRES 28 B 523 LYS ASP PHE SER ILE ALA ALA LYS PHE ALA LEU GLY PHE SEQRES 29 B 523 ALA VAL VAL ALA ILE GLY PHE PHE ILE TYR GLY PHE ALA SEQRES 30 B 523 GLY GLN PHE ALA VAL ASN GLY LYS THR SER SER TRP VAL SEQRES 31 B 523 MET ILE TRP GLY TYR ALA SER TYR SER LEU GLY GLU LEU SEQRES 32 B 523 LEU VAL SER GLY LEU GLY LEU ALA MET ILE ALA ARG TYR SEQRES 33 B 523 VAL PRO ALA ARG MET GLY GLY PHE MET MET GLY ALA TYR SEQRES 34 B 523 PHE VAL ALA SER GLY ILE SER GLN TYR LEU GLY GLY VAL SEQRES 35 B 523 VAL ALA ASN PHE ALA SER VAL PRO GLN ASP LEU VAL ASP SEQRES 36 B 523 PRO LEU GLN THR LEU PRO VAL TYR THR ASN LEU PHE ASN SEQRES 37 B 523 LYS LEU GLY VAL ALA ALA VAL VAL CYS THR ILE ILE ALA SEQRES 38 B 523 LEU ALA VAL LEU PRO LEU MET ARG ARG LEU THR GLU SER SEQRES 39 B 523 HIS HIS ALA HIS SER SER ILE GLU ASN ASN ALA ALA ALA SEQRES 40 B 523 SER LEU ARG ASP VAL LYS ALA GLU GLN ALA GLU ASN LEU SEQRES 41 B 523 TYR PHE GLN SEQRES 1 C 3 ALA ALA ALA SEQRES 1 E 3 ALA ALA ALA HET LMT A 601 35 HET ZN B 601 1 HET LMT B 602 35 HET LMT B 603 35 HETNAM LMT DODECYL-BETA-D-MALTOSIDE HETNAM ZN ZINC ION FORMUL 5 LMT 3(C24 H46 O11) FORMUL 6 ZN ZN 2+ HELIX 1 AA1 SER A 9 ARG A 42 1 34 HELIX 2 AA2 ASP A 46 ILE A 75 1 30 HELIX 3 AA3 GLY A 77 VAL A 98 1 22 HELIX 4 AA4 ASN A 102 TYR A 132 1 31 HELIX 5 AA5 LYS A 138 TYR A 172 1 35 HELIX 6 AA6 GLY A 177 LEU A 198 1 22 HELIX 7 AA7 MET A 199 ALA A 204 1 6 HELIX 8 AA8 ASN A 216 TYR A 240 1 25 HELIX 9 AA9 TYR A 240 ILE A 258 1 19 HELIX 10 AB1 ALA A 276 THR A 296 1 21 HELIX 11 AB2 THR A 296 ASN A 305 1 10 HELIX 12 AB3 SER A 321 GLN A 326 5 6 HELIX 13 AB4 ALA A 327 ALA A 341 1 15 HELIX 14 AB5 ALA A 357 PHE A 376 1 20 HELIX 15 AB6 SER A 388 SER A 406 1 19 HELIX 16 AB7 GLY A 409 ALA A 414 1 6 HELIX 17 AB8 MET A 426 ASN A 445 1 20 HELIX 18 AB9 PHE A 446 SER A 448 5 3 HELIX 19 AC1 ASP A 455 VAL A 484 1 30 HELIX 20 AC2 LEU A 485 THR A 492 1 8 HELIX 21 AC3 SER B 9 ARG B 42 1 34 HELIX 22 AC4 ASP B 46 SER B 64 1 19 HELIX 23 AC5 SER B 64 ILE B 75 1 12 HELIX 24 AC6 GLY B 77 THR B 97 1 21 HELIX 25 AC7 ASN B 102 TYR B 132 1 31 HELIX 26 AC8 LYS B 138 TYR B 172 1 35 HELIX 27 AC9 GLY B 177 LEU B 198 1 22 HELIX 28 AD1 MET B 199 ALA B 204 1 6 HELIX 29 AD2 ASN B 216 TYR B 240 1 25 HELIX 30 AD3 TYR B 240 PHE B 260 1 21 HELIX 31 AD4 LEU B 274 GLN B 292 1 19 HELIX 32 AD5 THR B 296 ASN B 305 1 10 HELIX 33 AD6 SER B 321 GLN B 326 5 6 HELIX 34 AD7 ALA B 327 ALA B 341 1 15 HELIX 35 AD8 ALA B 357 PHE B 376 1 20 HELIX 36 AD9 SER B 388 SER B 406 1 19 HELIX 37 AE1 GLY B 409 ALA B 414 1 6 HELIX 38 AE2 MET B 426 ASN B 445 1 20 HELIX 39 AE3 PHE B 446 SER B 448 5 3 HELIX 40 AE4 ASP B 455 VAL B 484 1 30 HELIX 41 AE5 LEU B 485 THR B 492 1 8 CISPEP 1 GLU A 175 PHE A 176 0 9.04 CISPEP 2 PHE A 313 GLY A 314 0 2.39 CISPEP 3 LEU A 317 TRP A 318 0 -15.47 CISPEP 4 GLU B 175 PHE B 176 0 8.71 CISPEP 5 PHE B 313 GLY B 314 0 2.86 CISPEP 6 LEU B 317 TRP B 318 0 -13.67 SITE 1 AC1 7 VAL A 152 PHE A 156 TRP A 163 ASP A 166 SITE 2 AC1 7 TRP A 318 THR A 319 GLN A 324 SITE 1 AC2 1 ASN B 468 SITE 1 AC3 7 PHE B 156 TRP B 163 ASP B 166 TRP B 318 SITE 2 AC3 7 THR B 319 SER B 321 GLN B 324 SITE 1 AC4 6 GLN A 458 LEU B 95 ASN B 102 TRP B 104 SITE 2 AC4 6 PHE B 105 SER B 108 CRYST1 78.990 107.560 203.710 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012660 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009297 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004909 0.00000