HEADER OXIDOREDUCTASE 08-JUN-14 4TPN TITLE HIGH-RESOLUTION STRUCTURE OF TXTE IN THE ABSENCE OF SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE P450-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SCABIES; SOURCE 3 ORGANISM_TAXID: 680198; SOURCE 4 STRAIN: 87.22; SOURCE 5 GENE: SCAB_31831; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B+ KEYWDS CYTOCHROME, P450, HEME, NITRATION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.K.B.CAHN,S.C.DODANI,S.BRINKMANN-CHEN,T.HEINSICH,J.A.MCINTOSH, AUTHOR 2 F.H.ARNOLD REVDAT 5 27-DEC-23 4TPN 1 REMARK REVDAT 4 22-NOV-17 4TPN 1 SOURCE REMARK REVDAT 3 15-OCT-14 4TPN 1 JRNL REVDAT 2 17-SEP-14 4TPN 1 JRNL REVDAT 1 10-SEP-14 4TPN 0 JRNL AUTH S.C.DODANI,J.K.CAHN,T.HEINISCH,S.BRINKMANN-CHEN, JRNL AUTH 2 J.A.MCINTOSH,F.H.ARNOLD JRNL TITL STRUCTURAL, FUNCTIONAL, AND SPECTROSCOPIC CHARACTERIZATION JRNL TITL 2 OF THE SUBSTRATE SCOPE OF THE NOVEL NITRATING CYTOCHROME JRNL TITL 3 P450 TXTE. JRNL REF CHEMBIOCHEM V. 15 2259 2014 JRNL REFN ESSN 1439-7633 JRNL PMID 25182183 JRNL DOI 10.1002/CBIC.201402241 REMARK 2 REMARK 2 RESOLUTION. 1.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 182894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 9227 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.18 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9527 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.3420 REMARK 3 BIN FREE R VALUE SET COUNT : 498 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3014 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 93 REMARK 3 SOLVENT ATOMS : 394 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.46000 REMARK 3 B22 (A**2) : 0.39000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.032 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.030 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.023 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.203 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.974 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3328 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4587 ; 1.661 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 426 ; 5.579 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;31.282 ;22.987 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 514 ;13.109 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;19.048 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 518 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2597 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1602 ; 1.398 ; 1.741 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2014 ; 1.374 ; 2.604 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1726 ; 3.022 ; 2.155 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3328 ; 8.230 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 96 ; 7.062 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3540 ; 6.377 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4TPN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000202027. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL K-B FOCUSING MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 182976 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.180 REMARK 200 RESOLUTION RANGE LOW (A) : 64.862 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 1.36200 REMARK 200 R SYM FOR SHELL (I) : 1.36200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.25 M LI2SO4, 0.5 M (NH4)2SO4, PH REMARK 280 5.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.84800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.17750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.71800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.17750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.84800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.71800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 61 REMARK 465 GLU A 62 REMARK 465 VAL A 63 REMARK 465 LEU A 64 REMARK 465 ALA A 65 REMARK 465 ALA A 66 REMARK 465 LYS A 67 REMARK 465 PHE A 68 REMARK 465 PRO A 69 REMARK 465 GLY A 70 REMARK 465 GLN A 71 REMARK 465 PRO A 72 REMARK 465 HIS A 176 REMARK 465 SER A 177 REMARK 465 GLY A 178 REMARK 465 PRO A 179 REMARK 465 LYS A 180 REMARK 465 ASP A 181 REMARK 465 GLN A 182 REMARK 465 PRO A 183 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 928 O HOH A 945 1.89 REMARK 500 O HOH A 928 O HOH A 946 1.93 REMARK 500 O HOH A 616 O HOH A 930 1.94 REMARK 500 NZ LYS A 192 O HOH A 601 1.98 REMARK 500 O HOH A 842 O HOH A 973 2.01 REMARK 500 NH2 ARG A 81 O HOH A 602 2.03 REMARK 500 O HOH A 968 O HOH A 973 2.04 REMARK 500 OD1 ASP A 76 O HOH A 603 2.05 REMARK 500 O HOH A 657 O HOH A 676 2.05 REMARK 500 O HOH A 845 O HOH A 930 2.06 REMARK 500 O HOH A 931 O HOH A 961 2.07 REMARK 500 OD2 ASP A 76 O HOH A 604 2.08 REMARK 500 O HOH A 929 O HOH A 946 2.08 REMARK 500 O PRO A 75 O HOH A 967 2.12 REMARK 500 O ASP A 76 NH1 ARG A 81 2.16 REMARK 500 O HOH A 929 O HOH A 945 2.17 REMARK 500 O ALA A 131 O HOH A 722 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 135 O HOH A 619 4556 1.96 REMARK 500 O HOH A 616 O HOH A 697 4556 2.01 REMARK 500 OE2 GLU A 145 O HOH A 603 4556 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 75 C - N - CA ANGL. DEV. = -10.3 DEGREES REMARK 500 ARG A 326 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP A 336 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 15 85.21 -152.82 REMARK 500 LEU A 142 -58.25 -134.75 REMARK 500 ARG A 208 -141.05 -112.50 REMARK 500 GLU A 229 11.15 -140.47 REMARK 500 ALA A 384 54.91 -117.29 REMARK 500 ASN A 390 -169.76 -78.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 357 SG REMARK 620 2 HEM A 501 NA 100.1 REMARK 620 3 HEM A 501 NB 93.1 90.5 REMARK 620 4 HEM A 501 NC 89.3 170.6 88.7 REMARK 620 5 HEM A 501 ND 97.2 88.4 169.8 90.7 REMARK 620 6 HOH A 723 O 171.8 86.9 82.5 83.7 87.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LI A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 511 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4TPO RELATED DB: PDB DBREF 4TPN A 1 406 UNP C9ZDC6 C9ZDC6_STRSW 1 406 SEQRES 1 A 406 MET THR VAL PRO SER PRO LEU ALA ASP PRO SER ILE VAL SEQRES 2 A 406 PRO ASP PRO TYR PRO VAL TYR ALA ASP LEU ALA GLN ARG SEQRES 3 A 406 ARG PRO VAL HIS TRP VAL GLU ARG LEU ASN ALA TRP ALA SEQRES 4 A 406 VAL LEU THR TYR ALA ASP CYS ALA ALA GLY LEU LYS ASP SEQRES 5 A 406 PRO ARG LEU THR ALA ASP ARG GLY THR GLU VAL LEU ALA SEQRES 6 A 406 ALA LYS PHE PRO GLY GLN PRO LEU PRO PRO ASP ASN ILE SEQRES 7 A 406 PHE HIS ARG TRP THR LYS ASN VAL VAL MET TYR THR ASP SEQRES 8 A 406 PRO PRO LEU HIS ASP ALA LEU ARG ARG SER VAL ARG ALA SEQRES 9 A 406 GLY PHE THR ARG ALA ALA HIS GLN HIS TYR ASP GLN VAL SEQRES 10 A 406 LEU GLN LYS VAL ALA HIS ASP LEU VAL ALA SER ILE PRO SEQRES 11 A 406 ALA GLY ALA THR GLU ILE ASP ALA VAL PRO ALA LEU ALA SEQRES 12 A 406 ALA GLU LEU PRO VAL ARG SER ALA VAL HIS ALA PHE GLY SEQRES 13 A 406 VAL PRO GLU GLU ASP LEU GLY PHE LEU ILE PRO ARG VAL SEQRES 14 A 406 ASN THR ILE MET THR TYR HIS SER GLY PRO LYS ASP GLN SEQRES 15 A 406 PRO VAL THR GLN GLU ILE ILE LEU GLU LYS LEU THR ASP SEQRES 16 A 406 LEU HIS THR TYR ALA SER GLU LEU LEU GLN GLY MET ARG SEQRES 17 A 406 GLY LYS VAL LEU PRO ASP THR VAL ILE ALA ARG LEU ALA SEQRES 18 A 406 ALA ALA GLN ASP GLY LEU THR GLU THR THR PRO GLU GLN SEQRES 19 A 406 THR VAL HIS GLN LEU ALA LEU VAL PHE ILE ALA LEU PHE SEQRES 20 A 406 ALA PRO THR THR PRO GLY SER LEU SER SER GLY THR LEU SEQRES 21 A 406 ALA PHE ALA ARG ASN PRO ARG GLN VAL GLU ARG PHE LEU SEQRES 22 A 406 ALA ASP GLN ALA CYS VAL ASP ASN THR ALA ASN GLU VAL SEQRES 23 A 406 LEU ARG TYR ASN ALA SER ASN GLN PHE THR TRP ARG VAL SEQRES 24 A 406 ALA ALA LYS ASP VAL GLU MET GLY GLY VAL ARG ILE GLU SEQRES 25 A 406 ALA GLY GLN THR LEU ALA LEU PHE LEU GLY SER ALA ASN SEQRES 26 A 406 ARG ASP ALA ASN MET PHE GLU ARG PRO ASN ASP PHE ASP SEQRES 27 A 406 LEU ASP ARG PRO ASN SER ALA ARG HIS LEU SER PHE GLY SEQRES 28 A 406 GLN GLY VAL HIS ALA CYS LEU ALA ALA GLN LEU ILE SER SEQRES 29 A 406 LEU GLN LEU LYS TRP PHE TYR VAL ALA LEU LEU ASN ARG SEQRES 30 A 406 PHE PRO GLY ILE ARG THR ALA GLY GLU PRO ILE TRP ASN SEQRES 31 A 406 GLU ASN LEU GLU PHE ARG SER LEU ARG SER LEU PRO LEU SEQRES 32 A 406 SER LEU ARG HET HEM A 501 43 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET SO4 A 506 5 HET LI A 507 1 HET SO4 A 508 5 HET SO4 A 509 5 HET SO4 A 510 5 HET SO4 A 511 5 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM LI LITHIUM ION HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 GOL 4(C3 H8 O3) FORMUL 7 SO4 5(O4 S 2-) FORMUL 8 LI LI 1+ FORMUL 13 HOH *394(H2 O) HELIX 1 AA1 ASP A 9 VAL A 13 5 5 HELIX 2 AA2 PRO A 16 ARG A 27 1 12 HELIX 3 AA3 GLU A 33 LEU A 35 5 3 HELIX 4 AA4 THR A 42 ASP A 52 1 11 HELIX 5 AA5 ASN A 77 LYS A 84 1 8 HELIX 6 AA6 ASN A 85 THR A 90 5 6 HELIX 7 AA7 PRO A 93 SER A 101 1 9 HELIX 8 AA8 VAL A 102 PHE A 106 5 5 HELIX 9 AA9 THR A 107 SER A 128 1 22 HELIX 10 AB1 ALA A 138 LEU A 142 1 5 HELIX 11 AB2 ALA A 144 ALA A 154 1 11 HELIX 12 AB3 PRO A 158 GLU A 160 5 3 HELIX 13 AB4 ASP A 161 MET A 173 1 13 HELIX 14 AB5 THR A 185 GLN A 205 1 21 HELIX 15 AB6 THR A 215 ALA A 223 1 9 HELIX 16 AB7 GLN A 224 LEU A 227 5 4 HELIX 17 AB8 THR A 231 ALA A 248 1 18 HELIX 18 AB9 PRO A 249 ASN A 265 1 17 HELIX 19 AC1 ASN A 265 ASP A 275 1 11 HELIX 20 AC2 ASP A 275 ASN A 281 1 7 HELIX 21 AC3 ASN A 281 ASN A 290 1 10 HELIX 22 AC4 PHE A 320 ASN A 325 1 6 HELIX 23 AC5 ASN A 343 HIS A 347 5 5 HELIX 24 AC6 ALA A 359 PHE A 378 1 20 SHEET 1 AA1 5 VAL A 29 VAL A 32 0 SHEET 2 AA1 5 ALA A 37 VAL A 40 -1 O ALA A 39 N HIS A 30 SHEET 3 AA1 5 THR A 316 LEU A 319 1 O ALA A 318 N TRP A 38 SHEET 4 AA1 5 THR A 296 ALA A 300 -1 N ARG A 298 O LEU A 317 SHEET 5 AA1 5 LEU A 55 THR A 56 -1 N THR A 56 O VAL A 299 SHEET 1 AA2 3 GLU A 135 ASP A 137 0 SHEET 2 AA2 3 PRO A 402 SER A 404 -1 O LEU A 403 N ILE A 136 SHEET 3 AA2 3 ARG A 382 THR A 383 -1 N ARG A 382 O SER A 404 SHEET 1 AA3 2 VAL A 304 MET A 306 0 SHEET 2 AA3 2 VAL A 309 ILE A 311 -1 O ILE A 311 N VAL A 304 SHEET 1 AA4 2 ILE A 388 TRP A 389 0 SHEET 2 AA4 2 LEU A 398 SER A 400 -1 O ARG A 399 N ILE A 388 LINK SG CYS A 357 FE HEM A 501 1555 1555 2.41 LINK FE HEM A 501 O HOH A 723 1555 1555 2.42 LINK O1 SO4 A 506 LI LI A 507 1555 1555 2.53 CISPEP 1 PRO A 92 PRO A 93 0 4.95 SITE 1 AC1 23 VAL A 87 MET A 88 HIS A 95 ARG A 99 SITE 2 AC1 23 ALA A 245 THR A 250 THR A 251 SER A 254 SITE 3 AC1 23 ASN A 293 THR A 296 ARG A 298 LEU A 321 SITE 4 AC1 23 SER A 349 PHE A 350 GLY A 351 VAL A 354 SITE 5 AC1 23 HIS A 355 CYS A 357 ALA A 359 ILE A 363 SITE 6 AC1 23 HOH A 723 HOH A 745 HOH A 848 SITE 1 AC2 6 ASP A 280 SER A 364 LEU A 365 HOH A 727 SITE 2 AC2 6 HOH A 769 HOH A 972 SITE 1 AC3 7 ASN A 284 ALA A 360 GLN A 361 SER A 364 SITE 2 AC3 7 HOH A 769 HOH A 834 HOH A 905 SITE 1 AC4 6 MET A 330 PHE A 331 GLU A 332 ARG A 341 SITE 2 AC4 6 PRO A 342 ASN A 343 SITE 1 AC5 6 THR A 2 PRO A 4 PRO A 266 GLU A 270 SITE 2 AC5 6 HOH A 651 HOH A 699 SITE 1 AC6 6 TYR A 175 ASN A 390 GLU A 391 ASN A 392 SITE 2 AC6 6 ARG A 399 LI A 507 SITE 1 AC7 4 ASN A 390 ARG A 399 SO4 A 506 HOH A 942 SITE 1 AC8 5 ARG A 168 HOH A 612 HOH A 619 HOH A 624 SITE 2 AC8 5 HOH A 994 SITE 1 AC9 5 ARG A 103 THR A 107 ARG A 108 SO4 A 510 SITE 2 AC9 5 HOH A 756 SITE 1 AD1 6 THR A 107 ALA A 109 SO4 A 509 HOH A 713 SITE 2 AD1 6 HOH A 756 HOH A 867 SITE 1 AD2 6 MET A 173 THR A 174 TYR A 175 ASN A 392 SITE 2 AD2 6 GLU A 394 PHE A 395 CRYST1 65.696 79.436 112.355 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015222 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012589 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008900 0.00000